jgi.p|Nanoce1779_2|616016, mRNA_11729 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|616016
Unique Name	mRNA_11729
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1651
Alignment location	scaffold_111:26359..28262 -

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Properties


Property Name	Value
TranscriptId	616102
Track	FilteredModels2
ProteinId	616016

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_111	supercontig	scaffold_111:26359..28262 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|616016	gene_11729	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|616016	mRNA_11729-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11729	CDS_11729	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_111:26359..28262-
coding sequence from alignment at scaffold_111:26359..28262-

mRNA sequence

>mRNA_11729 ID=mRNA_11729|Name=jgi.p|Nanoce1779_2|616016|organism=Nannochloropsis oceanica|type=mRNA|length=1651bp
TATATATATATATATATATATATATATATATATATATATATATATTCCCC
CACCGATCTTTGTACCGAGGTTTCCTCTTGTCAAGGTGAAGAGGGGTGCG
TGTGTCATCCCTTGTCCAATCCACTGCCACTGCCAGAAGTCCCCCTCATG
GCCATCTCCTCCTCCTCCCCCGCCCTTAGCCTGTATGACGCTCTGTACGA
CAAGGCCGAAACTCGGCATTTTACGGTCCTCATACTAGGCAGCTATGCCA
TGACCTTGTTGATGCAAATCATCAGTCATTTCGCTTCGCGAGCGCTTCTT
CCTCAGACGTACCCCGCACTCCCCCTCGCCCAGCGCGATGAGTGGAATAC
CCGAATTTGCTCCAGCTTCCATGCCTTTGCCGTTAGTGCCTTATCCTGCC
GCGTGATGCTAACGGAAGGCCCGTCGTTATACGAAGACGTGCGTCATCAT
TCCTACCTGGCGCCGGTCTGCCTCGCCATTACCACAGGCTATCTGCTCGC
GGATGCAACACTCGTCCTCTACTCCACCCTTCCCCGCTCCCTCCAATCCT
CTTCCCTCCCTTATGGCCCCCTCTCGGCTCCCGTCCCCACTCTCGCCCAC
CACCTCCTCGGTGCCATGGCGTTCTCCTCATCCCTCTACTTCCGCGCAGG
ATACGTCCTTTCCATCATGTTCATCGCCACAGAGCTTTCCACACCCTTGG
TCAACCTTCGATGGCATTTGATCCACATGGGTTCCAACCACGGATTGTCG
CGGCCGACTCGGGAGGGAGGGAGGTTGGGAGGGAAGGCGAGAGGGAGGGA
GTGGACACCGATGGATGGAGGGAAGGACAAAGGCCCCTTGGCAAGATGGG
CTCGACCGGTCGATATGGCGATGGTGGTCGTCTTTGGCGTATGTCGCGTG
CTGGTCCTACCCTTTCAATTCAAGATGGTGACGAGGCACGTGATCGCTTT
AGGGAAGGTGAGCAGGTGGTGGGTGAGTGTGCAGTGCGGGGCGAGCTTTG
TTGTGATTGCGGTTTTGAACGTGTGGTGGTTCGGGAAGATGCTTGCGTTG
CTTAAGAAAAGAGAGAGCAAGCGAGGGAGGGAGAGGAGCAACAGGAGTAG
CTAGAGCGTTTTGAGAGGGGCGAGGCAAGCGAGCGGTAGGGTATGGCGGT
AGGGAACCTGTAACAAGGCCAGGGAAGGATTGAAGAATGAGCAAAAAGGA
GTAAAAAGAAAACGCAGAACTGATGACAGTATATCTCACACTGATTTGTA
TTCGAGGCAACGTGTGCATATCAAGTGATCAAAGAGAACGGAGCGAATAT
AGCAGAAGAAACAAGCACTACAGTGAAAGTGAAGGGAGGAGGAGGGAGGG
GTGGAAGGGACGGAAGGGACGGGAGGAATGGGAGGGACGGAAGGAGGGGT
TATAGGTGATGGTGCGAGTCAGGTATATATATTTATCTGCGAAAGATTGT
TACTGACCAAATGCAAGGCTCTTGGTCATAAAAGAGGAAAACATACCTGC
TCCTTTACTCAAGAAAAATACCTCGAGTGGCCCATGTACTGCCTGCCCTG
CGTGCTCTCCTTTGCTTGCAAACTTGCTCTGCCTCCTCTATTGAGTACGC
GCCTTGGCGACAGCCACCGTGGCAAACATCACGCCCCTGGTCATGTGTCT
G

protein sequence of jgi.p|Nanoce1779_2|616016

>mRNA_11729-protein ID=mRNA_11729-protein|Name=jgi.p|Nanoce1779_2|616016|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MAISSSSPALSLYDALYDKAETRHFTVLILGSYAMTLLMQIISHFASRAL
LPQTYPALPLAQRDEWNTRICSSFHAFAVSALSCRVMLTEGPSLYEDVRH
HSYLAPVCLAITTGYLLADATLVLYSTLPRSLQSSSLPYGPLSAPVPTLA
HHLLGAMAFSSSLYFRAGYVLSIMFIATELSTPLVNLRWHLIHMGSNHGL
SRPTREGGRLGGKARGREWTPMDGGKDKGPLARWARPVDMAMVVVFGVCR
VLVLPFQFKMVTRHVIALGKVSRWWVSVQCGASFVVIAVLNVWWFGKMLA
LLKKRESKRGRERSNRS

mRNA from alignment at scaffold_111:26359..28262-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11729 ID=mRNA_11729|Name=jgi.p|Nanoce1779_2|616016|organism=Nannochloropsis oceanica|type=mRNA|length=1904bp|location=Sequence derived from alignment at scaffold_111:26359..28262- (Nannochloropsis oceanica)
TATATATATATATATATATATATATATATATATATATATATATATTCCCC
CACCGATCTTTGTACCGAGGTTTCCTCTTGTCAAGGTGAAGAGGGGTGCG
TGTGTCATCCCTTGTCCAATCCACTGCCACTGCCAGAAGTCCCCCTCATG
GCCATCTCCTCCTCCTCCCCCGCCCTTAGCCTGTATGACGCTCTGTACGA
CAAGGCCGAAACTCGGCATTTTACGGTCCTCATACTAGGCAGCTATGCCA
TGACCTTGTTGATGCAAATCATCAGTCATTTCGCTTCGCGAGCGCTTCTT
CCTCAGACGTACCCCGCACTCCCCCTCGCCCAGCGCGATGAGTGGAATAC
CCGAATTTGCTCCAGCTTCCATGCCTTTGCCGTTAGTGCCTTATCCTGCC
GCGTGATGCTAACGGAAGGCCCGTCGTTATACGAAGACGTGCGTCATCAT
TCCTACCTGGCGCCGGTCTGCCTCGCCATTACCACAGGCTATCTGCTCGC
GGTATGTATTTGTGTGAATTACATTTTTTTCTACATTATATTTTTTCTGC
GTTTGAGTGAGTCACTGACGCATGCACATACACATACATACGACCCTCTT
CCTTCACACGGCCACCGTAGGATGCAACACTCGTCCTCTACTCCACCCTT
CCCCGCTCCCTCCAATCCTCTTCCCTCCCTTATGGCCCCCTCTCGGCTCC
CGTCCCCACTCTCGCCCACCACCTCCTCGGTGCCATGGCGTTCTCCTCAT
CCCTCTACTTCCGCGCAGGGTAAGGAGTTTATCAACTACCGTCATACAAT
ATGAGATCTCCGCCTTACGTTCTCTTTCCGTCCCTCTCACCCTCCTCCCT
CCCTCCCTCCTTCTCTCTCGACCCGCATCTTCTTTTCATCCTCCCTCCCT
CAGATACGTCCTTTCCATCATGTTCATCGCCACAGAGCTTTCCACACCCT
TGGTCAACCTTCGATGGCATTTGATCCACATGGGTTCCAACCACGGATTG
TCGCGGCCGACTCGGGAGGGAGGGAGGTTGGGAGGGAAGGCGAGAGGGAG
GGAGTGGACACCGATGGATGGAGGGAAGGACAAAGGCCCCTTGGCAAGAT
GGGCTCGACCGGTCGATATGGCGATGGTGGTCGTCTTTGGCGTATGTCGC
GTGCTGGTCCTACCCTTTCAATTCAAGATGGTGACGAGGCACGTGATCGC
TTTAGGGAAGGTGAGCAGGTGGTGGGTGAGTGTGCAGTGCGGGGCGAGCT
TTGTTGTGATTGCGGTTTTGAACGTGTGGTGGTTCGGGAAGATGCTTGCG
TTGCTTAAGAAAAGAGAGAGCAAGCGAGGGAGGGAGAGGAGCAACAGGAG
TAGCTAGAGCGTTTTGAGAGGGGCGAGGCAAGCGAGCGGTAGGGTATGGC
GGTAGGGAACCTGTAACAAGGCCAGGGAAGGATTGAAGAATGAGCAAAAA
GGAGTAAAAAGAAAACGCAGAACTGATGACAGTATATCTCACACTGATTT
GTATTCGAGGCAACGTGTGCATATCAAGTGATCAAAGAGAACGGAGCGAA
TATAGCAGAAGAAACAAGCACTACAGTGAAAGTGAAGGGAGGAGGAGGGA
GGGGTGGAAGGGACGGAAGGGACGGGAGGAATGGGAGGGACGGAAGGAGG
GGTTATAGGTGATGGTGCGAGTCAGGTATATATATTTATCTGCGAAAGAT
TGTTACTGACCAAATGCAAGGCTCTTGGTCATAAAAGAGGAAAACATACC
TGCTCCTTTACTCAAGAAAAATACCTCGAGTGGCCCATGTACTGCCTGCC
CTGCGTGCTCTCCTTTGCTTGCAAACTTGCTCTGCCTCCTCTATTGAGTA
CGCGCCTTGGCGACAGCCACCGTGGCAAACATCACGCCCCTGGTCATGTG
TCTG

Coding sequence (CDS) from alignment at scaffold_111:26359..28262-

>mRNA_11729 ID=mRNA_11729|Name=jgi.p|Nanoce1779_2|616016|organism=Nannochloropsis oceanica|type=CDS|length=2859bp|location=Sequence derived from alignment at scaffold_111:26359..28262- (Nannochloropsis oceanica)
ATACGTCCTTTCCATCATGTTCATCGCCACAGAGCTTTCCACACCCTTGG
TCAACCTTCGATGGCATTTGATCCACATGGGTTCCAACCACGGATTGTCG
CGGCCGACTCGGGAGGGAGGGAGGTTGGGAGGGAAGGCGAGAGGGAGGGA
GTGGACACCGATGGATGGAGGGAAGGACAAAGGCCCCTTGGCAAGATGGG
CTCGACCGGTCGATATGGCGATGGTGGTCGTCTTTGGCGTATGTCGCGTG
CTGGTCCTACCCTTTCAATTCAAGATGGTGACGAGGCACGTGATCGCTTT
AGGGAAGGTGAGCAGGTGGTGGGTGAGTGTGCAGTGCGGGGCGAGCTTTG
TTGTGATTGCGGTTTTGAACGTGTGGTGGTTCGGGAAGATGCTTGCGTTG
CTTAAGAAAAGAGAGAGCAAGCGAGGGAGGGAGAGGAGCAACAGGAGTAG
GATGCAACACTCGTCCTCTACTCCACCCTTCCCCGCTCCCTCCAATCCTC
TTCCCTCCCTTATGGCCCCCTCTCGGCTCCCGTCCCCACTCTCGCCCACC
ACCTCCTCGGTGCCATGGCGTTCTCCTCATCCCTCTACTTCCGCGCAGGA
TGGCCATCTCCTCCTCCTCCCCCGCCCTTAGCCTGTATGACGCTCTGTAC
GACAAGGCCGAAACTCGGCATTTTACGGTCCTCATACTAGGCAGCTATGC
CATGACCTTGTTGATGCAAATCATCAGTCATTTCGCTTCGCGAGCGCTTC
TTCCTCAGACGTACCCCGCACTCCCCCTCGCCCAGCGCGATGAGTGGAAT
ACCCGAATTTGCTCCAGCTTCCATGCCTTTGCCGTTAGTGCCTTATCCTG
CCGCGTGATGCTAACGGAAGGCCCGTCGTTATACGAAGACGTGCGTCATC
ATTCCTACCTGGCGCCGGTCTGCCTCGCCATTACCACAGGCTATCTGCTC
GCGATACGTCCTTTCCATCATGTTCATCGCCACAGAGCTTTCCACACCCT
TGGTCAACCTTCGATGGCATTTGATCCACATGGGTTCCAACCACGGATTG
TCGCGGCCGACTCGGGAGGGAGGGAGGTTGGGAGGGAAGGCGAGAGGGAG
GGAGTGGACACCGATGGATGGAGGGAAGGACAAAGGCCCCTTGGCAAGAT
GGGCTCGACCGGTCGATATGGCGATGGTGGTCGTCTTTGGCGTATGTCGC
GTGCTGGTCCTACCCTTTCAATTCAAGATGGTGACGAGGCACGTGATCGC
TTTAGGGAAGGTGAGCAGGTGGTGGGTGAGTGTGCAGTGCGGGGCGAGCT
TTGTTGTGATTGCGGTTTTGAACGTGTGGTGGTTCGGGAAGATGCTTGCG
TTGCTTAAGAAAAGAGAGAGCAAGCGAGGGAGGGAGAGGAGCAACAGGAG
TAGGATGCAACACTCGTCCTCTACTCCACCCTTCCCCGCTCCCTCCAATC
CTCTTCCCTCCCTTATGGCCCCCTCTCGGCTCCCGTCCCCACTCTCGCCC
ACCACCTCCTCGGTGCCATGGCGTTCTCCTCATCCCTCTACTTCCGCGCA
GGATGGCCATCTCCTCCTCCTCCCCCGCCCTTAGCCTGTATGACGCTCTG
TACGACAAGGCCGAAACTCGGCATTTTACGGTCCTCATACTAGGCAGCTA
TGCCATGACCTTGTTGATGCAAATCATCAGTCATTTCGCTTCGCGAGCGC
TTCTTCCTCAGACGTACCCCGCACTCCCCCTCGCCCAGCGCGATGAGTGG
AATACCCGAATTTGCTCCAGCTTCCATGCCTTTGCCGTTAGTGCCTTATC
CTGCCGCGTGATGCTAACGGAAGGCCCGTCGTTATACGAAGACGTGCGTC
ATCATTCCTACCTGGCGCCGGTCTGCCTCGCCATTACCACAGGCTATCTG
CTCGCGATACGTCCTTTCCATCATGTTCATCGCCACAGAGCTTTCCACAC
CCTTGGTCAACCTTCGATGGCATTTGATCCACATGGGTTCCAACCACGGA
TTGTCGCGGCCGACTCGGGAGGGAGGGAGGTTGGGAGGGAAGGCGAGAGG
GAGGGAGTGGACACCGATGGATGGAGGGAAGGACAAAGGCCCCTTGGCAA
GATGGGCTCGACCGGTCGATATGGCGATGGTGGTCGTCTTTGGCGTATGT
CGCGTGCTGGTCCTACCCTTTCAATTCAAGATGGTGACGAGGCACGTGAT
CGCTTTAGGGAAGGTGAGCAGGTGGTGGGTGAGTGTGCAGTGCGGGGCGA
GCTTTGTTGTGATTGCGGTTTTGAACGTGTGGTGGTTCGGGAAGATGCTT
GCGTTGCTTAAGAAAAGAGAGAGCAAGCGAGGGAGGGAGAGGAGCAACAG
GAGTAGGATGCAACACTCGTCCTCTACTCCACCCTTCCCCGCTCCCTCCA
ATCCTCTTCCCTCCCTTATGGCCCCCTCTCGGCTCCCGTCCCCACTCTCG
CCCACCACCTCCTCGGTGCCATGGCGTTCTCCTCATCCCTCTACTTCCGC
GCAGGATGGCCATCTCCTCCTCCTCCCCCGCCCTTAGCCTGTATGACGCT
CTGTACGACAAGGCCGAAACTCGGCATTTTACGGTCCTCATACTAGGCAG
CTATGCCATGACCTTGTTGATGCAAATCATCAGTCATTTCGCTTCGCGAG
CGCTTCTTCCTCAGACGTACCCCGCACTCCCCCTCGCCCAGCGCGATGAG
TGGAATACCCGAATTTGCTCCAGCTTCCATGCCTTTGCCGTTAGTGCCTT
ATCCTGCCGCGTGATGCTAACGGAAGGCCCGTCGTTATACGAAGACGTGC
GTCATCATTCCTACCTGGCGCCGGTCTGCCTCGCCATTACCACAGGCTAT
CTGCTCGCG

Synonyms

Publications