jgi.p|Nanoce1779_2|42616, mRNA_11725 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|42616
Unique NamemRNA_11725
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1062
Alignment locationscaffold_111:19339..20400 -

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Properties
Property NameValue
TranscriptId42702
TrackFilteredModels2
ProteinId42616
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_111supercontigscaffold_111:19339..20400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|42616gene_11725Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|42616mRNA_11725-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11725CDS_11725Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11725 ID=mRNA_11725|Name=jgi.p|Nanoce1779_2|42616|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp
CACCCGCCTCGCCTTGCGCACAACGAAAAAAAGTCCTCCCACCATACACC
TATCCTTCATACCACATCACAGGCATCACAAGTCTGCCTCTATCTCGTCT
CTGCTAGACCGGGCCAGACTTTTTTTCCGGAATAGCAATATAACATAACC
ATGCGATTCATTGCCTCCTCCCGGTCCCTCCTGCTGGCCGCCGCTGCTGC
TGCGCTCTGCCTCCCGTCGGCGCTCGCCCACATCACGGTGGAGGATAACT
TTCTCGACGAGGCTGCGCGCGAGGATATTCTGGCCCAGCTGCCGGGACAA
ACCCGTTTCAAGCACACGCTGGACGTGCCGGGCCAGCTGTACCAACGCCT
CATGTCCATCATCAACCCAAGCAACACCGATCTCTCTCACACGGAGACCT
CGGTGCCGGCCAAGGGGGAAGGCCGATTTGTGCCCGCACACAAGGACGTA
TTCGAAGATAATGCGTTGGCGGACGGGCAAGTGGGGTTGGTGTACCTGGA
GGGGGATGGCCGCATGCTGTTCCAGCACGAGGTGACGGGCGAGGAGACGG
TGGTAGATGTGCAGCCTGGGCGATTGATGTCGTGGGACAACAGTGTGTAC
ACACACACTCTCATTCCCGGGGATCTGCCTCGTCGTATTCTGGGGCCGAT
GGCGTTTCGTGATGGAGGGATGCAGTCGATTGGGTCTGAGGCAACTCGTA
CCGTTGCTCAAGCGAGTACCAACTCCTTGACTGTGCGTCCAGGAAGGATC
ATCAAGGTGAACCTTAAGTTTATTGTCCTCGATGAGAACCCCATCCGCAA
GCGCGCGGTGCGGAAGTTGGAGAACGAGGACCTGGTGATCGGGGTAAGGA
CGGAGAGAGGAGAGGGGGGAGAACGGCGGAACGGAAAGAGGGAGGGAAGA
GCGAGGTTGCTTACCTTGCTGGTAGACATGATCACCACAGTCTACTGAGT
GACTGAAGGTCGCTGTTGCTCATACTGTGTTTCTTGCCCTGCGTATCGTG
TATCTTGCTATTGACCTGTCTCTTTGTCCCTCTCTCCTCTCTCGTTTCTC
CCACCCTCCACA
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protein sequence of jgi.p|Nanoce1779_2|42616

>mRNA_11725-protein ID=mRNA_11725-protein|Name=jgi.p|Nanoce1779_2|42616|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MRFIASSRSLLLAAAAAALCLPSALAHITVEDNFLDEAAREDILAQLPGQ
TRFKHTLDVPGQLYQRLMSIINPSNTDLSHTETSVPAKGEGRFVPAHKDV
FEDNALADGQVGLVYLEGDGRMLFQHEVTGEETVVDVQPGRLMSWDNSVY
THTLIPGDLPRRILGPMAFRDGGMQSIGSEATRTVAQASTNSLTVRPGRI
IKVNLKFIVLDENPIRKRAVRKLENEDLVIGVRTERGEGGERRNGKREGR
ARLLTLLVDMITTVY*
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mRNA from alignment at scaffold_111:19339..20400-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11725 ID=mRNA_11725|Name=jgi.p|Nanoce1779_2|42616|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp|location=Sequence derived from alignment at scaffold_111:19339..20400- (Nannochloropsis oceanica)
CACCCGCCTCGCCTTGCGCACAACGAAAAAAAGTCCTCCCACCATACACC
TATCCTTCATACCACATCACAGGCATCACAAGTCTGCCTCTATCTCGTCT
CTGCTAGACCGGGCCAGACTTTTTTTCCGGAATAGCAATATAACATAACC
ATGCGATTCATTGCCTCCTCCCGGTCCCTCCTGCTGGCCGCCGCTGCTGC
TGCGCTCTGCCTCCCGTCGGCGCTCGCCCACATCACGGTGGAGGATAACT
TTCTCGACGAGGCTGCGCGCGAGGATATTCTGGCCCAGCTGCCGGGACAA
ACCCGTTTCAAGCACACGCTGGACGTGCCGGGCCAGCTGTACCAACGCCT
CATGTCCATCATCAACCCAAGCAACACCGATCTCTCTCACACGGAGACCT
CGGTGCCGGCCAAGGGGGAAGGCCGATTTGTGCCCGCACACAAGGACGTA
TTCGAAGATAATGCGTTGGCGGACGGGCAAGTGGGGTTGGTGTACCTGGA
GGGGGATGGCCGCATGCTGTTCCAGCACGAGGTGACGGGCGAGGAGACGG
TGGTAGATGTGCAGCCTGGGCGATTGATGTCGTGGGACAACAGTGTGTAC
ACACACACTCTCATTCCCGGGGATCTGCCTCGTCGTATTCTGGGGCCGAT
GGCGTTTCGTGATGGAGGGATGCAGTCGATTGGGTCTGAGGCAACTCGTA
CCGTTGCTCAAGCGAGTACCAACTCCTTGACTGTGCGTCCAGGAAGGATC
ATCAAGGTGAACCTTAAGTTTATTGTCCTCGATGAGAACCCCATCCGCAA
GCGCGCGGTGCGGAAGTTGGAGAACGAGGACCTGGTGATCGGGGTAAGGA
CGGAGAGAGGAGAGGGGGGAGAACGGCGGAACGGAAAGAGGGAGGGAAGA
GCGAGGTTGCTTACCTTGCTGGTAGACATGATCACCACAGTCTACTGAGT
GACTGAAGGTCGCTGTTGCTCATACTGTGTTTCTTGCCCTGCGTATCGTG
TATCTTGCTATTGACCTGTCTCTTTGTCCCTCTCTCCTCTCTCGTTTCTC
CCACCCTCCACA
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Coding sequence (CDS) from alignment at scaffold_111:19339..20400-

>mRNA_11725 ID=mRNA_11725|Name=jgi.p|Nanoce1779_2|42616|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_111:19339..20400- (Nannochloropsis oceanica)
ATGCGATTCATTGCCTCCTCCCGGTCCCTCCTGCTGGCCGCCGCTGCTGC
TGCGCTCTGCCTCCCGTCGGCGCTCGCCCACATCACGGTGGAGGATAACT
TTCTCGACGAGGCTGCGCGCGAGGATATTCTGGCCCAGCTGCCGGGACAA
ACCCGTTTCAAGCACACGCTGGACGTGCCGGGCCAGCTGTACCAACGCCT
CATGTCCATCATCAACCCAAGCAACACCGATCTCTCTCACACGGAGACCT
CGGTGCCGGCCAAGGGGGAAGGCCGATTTGTGCCCGCACACAAGGACGTA
TTCGAAGATAATGCGTTGGCGGACGGGCAAGTGGGGTTGGTGTACCTGGA
GGGGGATGGCCGCATGCTGTTCCAGCACGAGGTGACGGGCGAGGAGACGG
TGGTAGATGTGCAGCCTGGGCGATTGATGTCGTGGGACAACAGTGTGTAC
ACACACACTCTCATTCCCGGGGATCTGCCTCGTCGTATTCTGGGGCCGAT
GGCGTTTCGTGATGGAGGGATGCAGTCGATTGGGTCTGAGGCAACTCGTA
CCGTTGCTCAAGCGAGTACCAACTCCTTGACTGTGCGTCCAGGAAGGATC
ATCAAGGTGAACCTTAAGTTTATTGTCCTCGATGAGAACCCCATCCGCAA
GCGCGCGGTGCGGAAGTTGGAGAACGAGGACCTGGTGATCGGGGTAAGGA
CGGAGAGAGGAGAGGGGGGAGAACGGCGGAACGGAAAGAGGGAGGGAAGA
GCGAGGTTGCTTACCTTGCTGGTAGACATGATCACCACAGTCTACTGA
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Synonyms
Publications