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Properties
| Property Name | Value |
|---|
| TranscriptId | 570570 |
| Track | FilteredModels2 |
| ProteinId | 570484 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_111 | supercontig | scaffold_111:22600..23937 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11727 ID=mRNA_11727|Name=jgi.p|Nanoce1779_2|570484|organism=Nannochloropsis oceanica|type=mRNA|length=795bp
ATGCGATTCATTGCCTCCTCCCGGTCCCTGCTGCTGGCCGCCACCGCTGC
TGCGCTCTGCCTCCCGTCGGCGCTCGCCCACATCACGGTGGAGGATAACT
TTCTCGACGAGGCTGCGCGCGAGGACATTCTGGCCCAGCTGCCGGGACAA
ACCCGTTTCAAGCACACGCTGGACGTGCCGGGCCAGCTGTACCAACGCCT
CATGTCCATCATCAACCCAAGCAACACCGATCTCTCTCATACGGAGACCT
CGGTGCCGGCCAAGGGGGAAGGCCGATTTGTGCCCGCACACAAGGACGTA
TTCGAAGATAATGCGTTGGCGGACGGGCAAGTGGGGTTGGTGTACCTGGA
GGGGGATGGCCGCATGCTGTTCCAGCACGAGGTGACGGGCGAGGAGACGG
TGGTAGATGTGCAGCCTGGGCGATTGATGTCGTGGGACAACAGTGTGTAC
ACGCATACTCTCATTCCCGGGGATCTGCCTCGTCGTATTCTGGGGCCGAT
GGCGTTTCGTGATGGAGAGATGCAGTCTATTGGGGATCAAGCCCCTCGCG
TCGTTGCTCAAGCGAGAACCAACTCCTTGACTGTGCGTCCGGGAGGAATA
ATCAGGGTGGGCCTTTCCTTCGTGGTCCTTGATGTGGATGGAAATGCCGC
GAGCGCTAGCGTAAAGCGCGCGATCACCTGGGCTTTCCGTGTGGGGAAGG
GCGTGCCGTCCGGTACGGTTGTCCCGATCGGTGTCGTTATTGAGGATGAT
AACACCCCAGAGTTCCTGGTCGAGCTGCGGGTGCTGGTGAAGTAA back to topprotein sequence of jgi.p|Nanoce1779_2|570484 >mRNA_11727-protein ID=mRNA_11727-protein|Name=jgi.p|Nanoce1779_2|570484|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MRFIASSRSLLLAATAAALCLPSALAHITVEDNFLDEAAREDILAQLPGQ
TRFKHTLDVPGQLYQRLMSIINPSNTDLSHTETSVPAKGEGRFVPAHKDV
FEDNALADGQVGLVYLEGDGRMLFQHEVTGEETVVDVQPGRLMSWDNSVY
THTLIPGDLPRRILGPMAFRDGEMQSIGDQAPRVVAQARTNSLTVRPGGI
IRVGLSFVVLDVDGNAASASVKRAITWAFRVGKGVPSGTVVPIGVVIEDD
NTPEFLVELRVLVK* back to topmRNA from alignment at scaffold_111:22600..23937- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11727 ID=mRNA_11727|Name=jgi.p|Nanoce1779_2|570484|organism=Nannochloropsis oceanica|type=mRNA|length=1338bp|location=Sequence derived from alignment at scaffold_111:22600..23937- (Nannochloropsis oceanica)
ATGCGATTCATTGCCTCCTCCCGGTCCCTGCTGCTGGCCGCCACCGCTGC
TGCGCTCTGCCTCCCGTCGGCGCTCGCCCACATCACGGTGGAGGATAACT
TTCTCGACGAGGCTGCGCGCGAGGACATTCTGGCCCAGCTGCCGGGACAA
ACCCGTTTCAAGCACACGCTGGACGTGCCGGGCCAGCTGTACCAACGCCT
CATGTCCATCATCAACCCAAGCAACACCGATCTCTCTCATACGGAGACCT
CGGTGCCGGCCAAGGGGGAAGGCCGATTTGTGCCCGCACACAAGGACGTA
TTCGAAGATAATGCGTTGGCGGACGGGCAAGTGGGGTTGGTGTACCTGGA
GGGGGATGGCCGCATGCTGTTCCAGCACGAGGTGACGGGCGAGGAGACGG
TGGTAGATGTGCAGCCTGGGCGATTGATGTCGTGGGACAACAGTGTGTAC
ACGCATACTCTCATTCCCGGGGATCTGCCTCGTCGTATTCTGGGGCCGAT
GGCGTTTCGTGATGGAGAGATGCAGTCTATTGGGGATCAAGCCCCTCGCG
TCGTTGCTCAAGCGAGAACCAACTCCTTGACTGTGCGTCCGGGAGGAATA
ATCAGGGTGGGCCTTTCCTTCGTGGTCCTTGATGTGGATGGAAATGCCGC
GAGCGCTAGCGTAAAGCGCGCGGTGCGGAAGTTGGAGAACAAGGACCTGG
TGATCGGGGTAAGGACGGAGAGGAGAGAGGAGAGGGGGGAGAACGGCGGA
ACGGAAAGATATATATATACTGTGTTTCTTGCTCTGCGTATCGTGTATCT
TGCTATTGACCTGTCTCTTTGTCCCTCTCTCCTCTCTCGTTTCTCCCACC
CTCCACATCTCTCCCCAGTGCGGACTGATGGATCAGAACAGGCGAATGCT
CGGGGGGCGCAACAAGACAACGAATGCGAACGATGATATCACATTCGTAA
ACTCCAAGCTGAAGCCCAATTTCTACAAGCCGAAGTACGTATCTTTGCCC
CGCTTCCTCCCTGTCTGACGGATGTGGGAGCGAGATATGGCGAGCGTGTC
TTTTGGGAGAAGAAAGCCAACTTTTCAGTGCCAGAGCTCATCGTCCCTCT
CTTCGTATTCTCCCTCGCTCTCTTGCTCCCTGCCAGGTTGACCTTCAATA
ATACACTCGATGCTGTGTATTGGACCCTCCCGAGCGAGACGACGAAAATC
CTGCACCCGTACAAGATCACCTGGGCTTTCCGTGTGGGGAAGGGCGTGCC
GTCCGGTACGGTTGTCCCGATCGGTGTCGTTATTGAGGATGATAACACCC
CAGAGTTCCTGGTCGAGCTGCGGGTGCTGGTGAAGTAA back to topCoding sequence (CDS) from alignment at scaffold_111:22600..23937- >mRNA_11727 ID=mRNA_11727|Name=jgi.p|Nanoce1779_2|570484|organism=Nannochloropsis oceanica|type=CDS|length=1590bp|location=Sequence derived from alignment at scaffold_111:22600..23937- (Nannochloropsis oceanica)
ATCACCTGGGCTTTCCGTGTGGGGAAGGGCGTGCCGTCCGGTACGGTTGT
CCCGATCGGTGTCGTTATTGAGGATGATAACACCCCAGAGTTCCTGGTCG
AGCTGCGGGTGCTGGTGAAGTAAATGCGATTCATTGCCTCCTCCCGGTCC
CTGCTGCTGGCCGCCACCGCTGCTGCGCTCTGCCTCCCGTCGGCGCTCGC
CCACATCACGGTGGAGGATAACTTTCTCGACGAGGCTGCGCGCGAGGACA
TTCTGGCCCAGCTGCCGGGACAAACCCGTTTCAAGCACACGCTGGACGTG
CCGGGCCAGCTGTACCAACGCCTCATGTCCATCATCAACCCAAGCAACAC
CGATCTCTCTCATACGGAGACCTCGGTGCCGGCCAAGGGGGAAGGCCGAT
TTGTGCCCGCACACAAGGACGTATTCGAAGATAATGCGTTGGCGGACGGG
CAAGTGGGGTTGGTGTACCTGGAGGGGGATGGCCGCATGCTGTTCCAGCA
CGAGGTGACGGGCGAGGAGACGGTGGTAGATGTGCAGCCTGGGCGATTGA
TGTCGTGGGACAACAGTGTGTACACGCATACTCTCATTCCCGGGGATCTG
CCTCGTCGTATTCTGGGGCCGATGGCGTTTCGTGATGGAGAGATGCAGTC
TATTGGGGATCAAGCCCCTCGCGTCGTTGCTCAAGCGAGAACCAACTCCT
TGACTGTGCGTCCGGGAGGAATAATCAGGGTGGGCCTTTCCTTCGTGGTC
CTTGATGTGGATGGAAATGCCGCGAGCGCTAGCGTAAAGCGCGCGATCAC
CTGGGCTTTCCGTGTGGGGAAGGGCGTGCCGTCCGGTACGGTTGTCCCGA
TCGGTGTCGTTATTGAGGATGATAACACCCCAGAGTTCCTGGTCGAGCTG
CGGGTGCTGGTGAAGTAAATGCGATTCATTGCCTCCTCCCGGTCCCTGCT
GCTGGCCGCCACCGCTGCTGCGCTCTGCCTCCCGTCGGCGCTCGCCCACA
TCACGGTGGAGGATAACTTTCTCGACGAGGCTGCGCGCGAGGACATTCTG
GCCCAGCTGCCGGGACAAACCCGTTTCAAGCACACGCTGGACGTGCCGGG
CCAGCTGTACCAACGCCTCATGTCCATCATCAACCCAAGCAACACCGATC
TCTCTCATACGGAGACCTCGGTGCCGGCCAAGGGGGAAGGCCGATTTGTG
CCCGCACACAAGGACGTATTCGAAGATAATGCGTTGGCGGACGGGCAAGT
GGGGTTGGTGTACCTGGAGGGGGATGGCCGCATGCTGTTCCAGCACGAGG
TGACGGGCGAGGAGACGGTGGTAGATGTGCAGCCTGGGCGATTGATGTCG
TGGGACAACAGTGTGTACACGCATACTCTCATTCCCGGGGATCTGCCTCG
TCGTATTCTGGGGCCGATGGCGTTTCGTGATGGAGAGATGCAGTCTATTG
GGGATCAAGCCCCTCGCGTCGTTGCTCAAGCGAGAACCAACTCCTTGACT
GTGCGTCCGGGAGGAATAATCAGGGTGGGCCTTTCCTTCGTGGTCCTTGA
TGTGGATGGAAATGCCGCGAGCGCTAGCGTAAAGCGCGCG back to top
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