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Properties
| Property Name | Value |
|---|
| TranscriptId | 42812 |
| Track | FilteredModels2 |
| ProteinId | 42726 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_111 | supercontig | scaffold_111:24977..26212 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11728 ID=mRNA_11728|Name=jgi.p|Nanoce1779_2|42726|organism=Nannochloropsis oceanica|type=mRNA|length=840bp
CACACCACCGTATGTACACGCCCAGTACAGGCGCTATCATTTCCACCAAA
AGCAGCATCATCATCAGCAGCATTTGTAGCCGGGGGTCACCATGCGGCAA
GAGCTCACGACCGTGGACCCCGTCGTCCAACAATCTTTTGACCAGCTCCT
CATCCGGCATCCAGACGTGGAAATTATTCTTCTCAGCACCGCAGAGGGCA
TCCCATTGATGCACGCAGCCGTCCGTCCCTCTTTTTCCTCTTTCCCTCCC
GCCTCCTCCATATCCGTCCTCGAGACCCGAATCACTGCCATCTTCAGTAT
TGCCGCCGACCAAGCTCGAAAACTGGGCCATGGCTCCTGTAAATCCATCG
TCTCTCTATATCAGGGCTTGACGCTTGTGCACGTCAATCTGTCTCCACTT
GTTCTTTCTTTTGTGGGATACGCCGCGACTGCAACTGCCATGGAGCTTGG
GCAAGAGAACGATTTGGCCTCGTGCACACCATCCTTGACAGGAGGGGGAG
CGGAGGGGGGGCTGGAGGGAGGGAGGGAAGGAGTGTTGGGGTCGGTTTTT
CCATTGCAATTGATGAATGTGGGCATGATATTGGATTCGCAGCATGTATA
TGCAGAGGCGCTGGCGCCATTGAGAGCAGCAGTTGAAGCGTCGGAAAGGG
AGGCAGCCAAAGGAAGGATACTGTAAGGGGAGCTGCAAGGTTGAGGAGGA
AGAAAGGGCGATCGAATAGCCATGAGTAGGTAAATGTGAAAATGATATCA
CAAATTTAAAGAAAAAGAAAAGAGAAATACAAGGAAGCCCGGAAGCCAGC
CTTGTTTAGCGCTGGTCCTTTGGCCTTCCTTGAGGTAGGG back to topprotein sequence of jgi.p|Nanoce1779_2|42726 >mRNA_11728-protein ID=mRNA_11728-protein|Name=jgi.p|Nanoce1779_2|42726|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MRQELTTVDPVVQQSFDQLLIRHPDVEIILLSTAEGIPLMHAAVRPSFSS
FPPASSISVLETRITAIFSIAADQARKLGHGSCKSIVSLYQGLTLVHVNL
SPLVLSFVGYAATATAMELGQENDLASCTPSLTGGGAEGGLEGGREGVLG
SVFPLQLMNVGMILDSQHVYAEALAPLRAAVEASEREAAKGRIL* back to topmRNA from alignment at scaffold_111:24977..26212- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11728 ID=mRNA_11728|Name=jgi.p|Nanoce1779_2|42726|organism=Nannochloropsis oceanica|type=mRNA|length=1236bp|location=Sequence derived from alignment at scaffold_111:24977..26212- (Nannochloropsis oceanica)
CACACCACCGTATGTACACGCCCAGTACAGGCGCTATCATTTCCACCAAA
AGCAGCATCATCATCAGCAGCATTTGTAGCCGGGGGTCACCATGCGGCAA
GAGCTCACGACCGTGGTAAGAGAGGAGGAGACTCTTCTCCCTCCTCCCTC
CCTCCCTCCCTCCTTCCCTACTTGCTCTCCTACCATCGTCGCAAATCCGT
TGCTTATGCGGCTGTCTCGTTACAACCCGCTCACCAAGATTTTAACAAGC
TCCTGGCTCTTTCTTCTGCACACTTTCCCCCTGTGTTCCCTCCTGTTTTG
GCCCTCGGTCATCCACTGATGTCCCGCCTTCCCTCCGTTCGTACTCTTCC
TATGCGTAGGACCCCGTCGTCCAACAATCTTTTGACCAGCTCCTCATCCG
GCATCCAGACGTGGAAATTATTCTTCTCAGCACCGCAGAGGGCATCCCAT
TGATGCACGGTACGTCTATAAACAAATCCTCCCCTCCCTCCTTCCCTCCC
TCCCACAATCCTCCCCCCCCCACACGTTTCCTATCTCACTTTTCGAAACT
CCCCTTCCTCTGAAGATTCACCCTAGTTCCTCTCCCAACATTCTAAATAA
TTCAACACAAGCAGCCGTCCGTCCCTCTTTTTCCTCTTTCCCTCCCGCCT
CCTCCATATCCGTCCTCGAGACCCGAATCACTGCCATCTTCAGTATTGCC
GCCGACCAAGCTCGAAAACTGGGCCATGGCTCCTGTAAATCCATCGTCTC
TCTATATCAGGGCTTGACGCTTGTGCACGTCAATCTGTCTCCACTTGTTC
TTTCTTTTGTGGGATACGCCGCGACTGCAACTGCCATGGAGCTTGGGCAA
GAGAACGATTTGGCCTCGTGCACACCATCCTTGACAGGAGGGGGAGCGGA
GGGGGGGCTGGAGGGAGGGAGGGAAGGAGTGTTGGGGTCGGTTTTTCCAT
TGCAATTGATGAATGTGGGCATGATATTGGATTCGCAGCATGTATATGCA
GAGGCGCTGGCGCCATTGAGAGCAGCAGTTGAAGCGTCGGAAAGGGAGGC
AGCCAAAGGAAGGATACTGTAAGGGGAGCTGCAAGGTTGAGGAGGAAGAA
AGGGCGATCGAATAGCCATGAGTAGGTAAATGTGAAAATGATATCACAAA
TTTAAAGAAAAAGAAAAGAGAAATACAAGGAAGCCCGGAAGCCAGCCTTG
TTTAGCGCTGGTCCTTTGGCCTTCCTTGAGGTAGGG back to topCoding sequence (CDS) from alignment at scaffold_111:24977..26212- >mRNA_11728 ID=mRNA_11728|Name=jgi.p|Nanoce1779_2|42726|organism=Nannochloropsis oceanica|type=CDS|length=1755bp|location=Sequence derived from alignment at scaffold_111:24977..26212- (Nannochloropsis oceanica)
CAGCCGTCCGTCCCTCTTTTTCCTCTTTCCCTCCCGCCTCCTCCATATCC
GTCCTCGAGACCCGAATCACTGCCATCTTCAGTATTGCCGCCGACCAAGC
TCGAAAACTGGGCCATGGCTCCTGTAAATCCATCGTCTCTCTATATCAGG
GCTTGACGCTTGTGCACGTCAATCTGTCTCCACTTGTTCTTTCTTTTGTG
GGATACGCCGCGACTGCAACTGCCATGGAGCTTGGGCAAGAGAACGATTT
GGCCTCGTGCACACCATCCTTGACAGGAGGGGGAGCGGAGGGGGGGCTGG
AGGGAGGGAGGGAAGGAGTGTTGGGGTCGGTTTTTCCATTGCAATTGATG
AATGTGGGCATGATATTGGATTCGCAGCATGTATATGCAGAGGCGCTGGC
GCCATTGAGAGCAGCAGTTGAAGCGTCGGAAAGGGAGGCAGCCAAAGGAA
GGATACTGTAAGACCCCGTCGTCCAACAATCTTTTGACCAGCTCCTCATC
CGGCATCCAGACGTGGAAATTATTCTTCTCAGCACCGCAGAGGGCATCCC
ATTGATGCACGATGCGGCAAGAGCTCACGACCGTGCAGCCGTCCGTCCCT
CTTTTTCCTCTTTCCCTCCCGCCTCCTCCATATCCGTCCTCGAGACCCGA
ATCACTGCCATCTTCAGTATTGCCGCCGACCAAGCTCGAAAACTGGGCCA
TGGCTCCTGTAAATCCATCGTCTCTCTATATCAGGGCTTGACGCTTGTGC
ACGTCAATCTGTCTCCACTTGTTCTTTCTTTTGTGGGATACGCCGCGACT
GCAACTGCCATGGAGCTTGGGCAAGAGAACGATTTGGCCTCGTGCACACC
ATCCTTGACAGGAGGGGGAGCGGAGGGGGGGCTGGAGGGAGGGAGGGAAG
GAGTGTTGGGGTCGGTTTTTCCATTGCAATTGATGAATGTGGGCATGATA
TTGGATTCGCAGCATGTATATGCAGAGGCGCTGGCGCCATTGAGAGCAGC
AGTTGAAGCGTCGGAAAGGGAGGCAGCCAAAGGAAGGATACTGTAAGACC
CCGTCGTCCAACAATCTTTTGACCAGCTCCTCATCCGGCATCCAGACGTG
GAAATTATTCTTCTCAGCACCGCAGAGGGCATCCCATTGATGCACGATGC
GGCAAGAGCTCACGACCGTGCAGCCGTCCGTCCCTCTTTTTCCTCTTTCC
CTCCCGCCTCCTCCATATCCGTCCTCGAGACCCGAATCACTGCCATCTTC
AGTATTGCCGCCGACCAAGCTCGAAAACTGGGCCATGGCTCCTGTAAATC
CATCGTCTCTCTATATCAGGGCTTGACGCTTGTGCACGTCAATCTGTCTC
CACTTGTTCTTTCTTTTGTGGGATACGCCGCGACTGCAACTGCCATGGAG
CTTGGGCAAGAGAACGATTTGGCCTCGTGCACACCATCCTTGACAGGAGG
GGGAGCGGAGGGGGGGCTGGAGGGAGGGAGGGAAGGAGTGTTGGGGTCGG
TTTTTCCATTGCAATTGATGAATGTGGGCATGATATTGGATTCGCAGCAT
GTATATGCAGAGGCGCTGGCGCCATTGAGAGCAGCAGTTGAAGCGTCGGA
AAGGGAGGCAGCCAAAGGAAGGATACTGTAAGACCCCGTCGTCCAACAAT
CTTTTGACCAGCTCCTCATCCGGCATCCAGACGTGGAAATTATTCTTCTC
AGCACCGCAGAGGGCATCCCATTGATGCACGATGCGGCAAGAGCTCACGA
CCGTG back to top
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