scaffold_93, scaffold_93 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_93
Unique Name	scaffold_93
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	47120
Alignment location	jgi.p\|Nanoce1779_2\|449870:15931..17044 +
Alignment location	jgi.p\|Nanoce1779_2\|449870:15931..17044 +
Alignment location	CDS_11737:16020..16124 +
Alignment location	CDS_11737:16335..16397 +
Alignment location	CDS_11737:16604..16822 +
Alignment location	jgi.p\|Nanoce1779_2\|450689:39509..40942 -
Alignment location	jgi.p\|Nanoce1779_2\|450689:39509..40942 -
Alignment location	CDS_11743:40711..40855 -
Alignment location	CDS_11743:40270..40536 -
Alignment location	CDS_11743:39595..40190 -
Alignment location	jgi.p\|Nanoce1779_2\|614860:7230..8189 +
Alignment location	jgi.p\|Nanoce1779_2\|614860:7230..8189 +
Alignment location	CDS_11734:7269..7589 +
Alignment location	jgi.p\|Nanoce1779_2\|614862:8359..10393 -
Alignment location	jgi.p\|Nanoce1779_2\|614862:8359..10393 -
Alignment location	CDS_11735:10218..10360 -
Alignment location	CDS_11735:9881..10058 -
Alignment location	CDS_11735:9194..9628 -
Alignment location	jgi.p\|Nanoce1779_2\|614866:10804..15621 +
Alignment location	jgi.p\|Nanoce1779_2\|614866:10804..15621 +
Alignment location	CDS_11736:10902..10947 +
Alignment location	CDS_11736:11198..11325 +
Alignment location	CDS_11736:11685..11729 +
Alignment location	CDS_11736:11803..11897 +
Alignment location	CDS_11736:12046..12097 +
Alignment location	CDS_11736:12240..12302 +
Alignment location	CDS_11736:12616..12719 +
Alignment location	CDS_11736:12846..12912 +
Alignment location	CDS_11736:12938..12982 +
Alignment location	CDS_11736:13198..13267 +
Alignment location	CDS_11736:13848..13934 +
Alignment location	CDS_11736:14126..14181 +
Alignment location	CDS_11736:14461..14535 +
Alignment location	CDS_11736:14747..14845 +
Alignment location	CDS_11736:15156..15245 +
Alignment location	jgi.p\|Nanoce1779_2\|614873:16701..18404 +
Alignment location	jgi.p\|Nanoce1779_2\|614873:16701..18404 +
Alignment location	CDS_11738:16940..16989 +
Alignment location	CDS_11738:17184..17319 +
Alignment location	CDS_11738:17615..17748 +
Alignment location	CDS_11738:18111..18189 +
Alignment location	jgi.p\|Nanoce1779_2\|614890:21481..27187 -
Alignment location	jgi.p\|Nanoce1779_2\|614890:21481..27187 -
Alignment location	CDS_11739:26378..27110 -
Alignment location	CDS_11739:26146..26290 -
Alignment location	CDS_11739:25847..25986 -
Alignment location	CDS_11739:25511..25768 -
Alignment location	CDS_11739:25323..25409 -
Alignment location	CDS_11739:24812..25181 -
Alignment location	CDS_11739:24299..24690 -
Alignment location	CDS_11739:23000..24199 -
Alignment location	CDS_11739:22696..22790 -
Alignment location	jgi.p\|Nanoce1779_2\|614895:27296..31916 +
Alignment location	jgi.p\|Nanoce1779_2\|614895:27296..31916 +
Alignment location	CDS_11741:30939..31124 +
Alignment location	CDS_11741:31254..31613 +
Alignment location	jgi.p\|Nanoce1779_2\|614906:28984..31916 +
Alignment location	jgi.p\|Nanoce1779_2\|614906:28984..31916 +
Alignment location	CDS_11740:29035..29460 +
Alignment location	CDS_11740:29564..29780 +
Alignment location	CDS_11740:29930..30144 +
Alignment location	jgi.p\|Nanoce1779_2\|614909:32310..37786 -
Alignment location	jgi.p\|Nanoce1779_2\|614909:32310..37786 -
Alignment location	CDS_11742:36977..37709 -
Alignment location	CDS_11742:36745..36889 -
Alignment location	CDS_11742:36425..36564 -
Alignment location	CDS_11742:36083..36340 -
Alignment location	CDS_11742:35908..35994 -
Alignment location	CDS_11742:35390..35759 -
Alignment location	CDS_11742:34876..35267 -
Alignment location	CDS_11742:33577..34776 -
Alignment location	CDS_11742:33273..33367 -
Alignment location	jgi.p\|Nanoce1779_2\|614938:45715..46904 -
Alignment location	jgi.p\|Nanoce1779_2\|614938:45715..46904 -
Alignment location	CDS_11745:46842..46844 -
Alignment location	CDS_11745:45715..46632 -
Alignment location	jgi.p\|Nanoce1779_2\|634548:38780..43007 +
Alignment location	jgi.p\|Nanoce1779_2\|634548:38780..43007 +
Alignment location	CDS_11744:41232..41850 +
Alignment location	CDS_11744:42101..42885 +
Alignment location	jgi.p\|Nanoce1779_2\|449870:16020..16822 +
Alignment location	jgi.p\|Nanoce1779_2\|450689:39595..40855 -
Alignment location	jgi.p\|Nanoce1779_2\|614860:7269..7589 +
Alignment location	jgi.p\|Nanoce1779_2\|614862:9194..10360 -
Alignment location	jgi.p\|Nanoce1779_2\|614866:10902..15245 +
Alignment location	jgi.p\|Nanoce1779_2\|614873:16940..18189 +
Alignment location	jgi.p\|Nanoce1779_2\|614890:22696..27110 -
Alignment location	jgi.p\|Nanoce1779_2\|614895:30939..31613 +
Alignment location	jgi.p\|Nanoce1779_2\|614906:29035..30144 +
Alignment location	jgi.p\|Nanoce1779_2\|614909:33273..37709 -
Alignment location	jgi.p\|Nanoce1779_2\|614938:45715..46844 -
Alignment location	jgi.p\|Nanoce1779_2\|634548:41232..42885 +
Alignment location	ncniL008:7231..46904 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|449870	gene	jgi.p\|Nanoce1779_2\|449870:15931..17044 +
jgi.p\|Nanoce1779_2\|449870	mRNA	jgi.p\|Nanoce1779_2\|449870:15931..17044 +
CDS_11737	CDS	CDS_11737:16020..16124 +
CDS_11737	CDS	CDS_11737:16335..16397 +
CDS_11737	CDS	CDS_11737:16604..16822 +
jgi.p\|Nanoce1779_2\|450689	gene	jgi.p\|Nanoce1779_2\|450689:39509..40942 -
jgi.p\|Nanoce1779_2\|450689	mRNA	jgi.p\|Nanoce1779_2\|450689:39509..40942 -
CDS_11743	CDS	CDS_11743:40711..40855 -
CDS_11743	CDS	CDS_11743:40270..40536 -
CDS_11743	CDS	CDS_11743:39595..40190 -
jgi.p\|Nanoce1779_2\|614860	gene	jgi.p\|Nanoce1779_2\|614860:7230..8189 +
jgi.p\|Nanoce1779_2\|614860	mRNA	jgi.p\|Nanoce1779_2\|614860:7230..8189 +
CDS_11734	CDS	CDS_11734:7269..7589 +
jgi.p\|Nanoce1779_2\|614862	gene	jgi.p\|Nanoce1779_2\|614862:8359..10393 -
jgi.p\|Nanoce1779_2\|614862	mRNA	jgi.p\|Nanoce1779_2\|614862:8359..10393 -
CDS_11735	CDS	CDS_11735:10218..10360 -
CDS_11735	CDS	CDS_11735:9881..10058 -
CDS_11735	CDS	CDS_11735:9194..9628 -
jgi.p\|Nanoce1779_2\|614866	gene	jgi.p\|Nanoce1779_2\|614866:10804..15621 +
jgi.p\|Nanoce1779_2\|614866	mRNA	jgi.p\|Nanoce1779_2\|614866:10804..15621 +
CDS_11736	CDS	CDS_11736:10902..10947 +
CDS_11736	CDS	CDS_11736:11198..11325 +
CDS_11736	CDS	CDS_11736:11685..11729 +
CDS_11736	CDS	CDS_11736:11803..11897 +
CDS_11736	CDS	CDS_11736:12046..12097 +
CDS_11736	CDS	CDS_11736:12240..12302 +
CDS_11736	CDS	CDS_11736:12616..12719 +
CDS_11736	CDS	CDS_11736:12846..12912 +
CDS_11736	CDS	CDS_11736:12938..12982 +
CDS_11736	CDS	CDS_11736:13198..13267 +
CDS_11736	CDS	CDS_11736:13848..13934 +
CDS_11736	CDS	CDS_11736:14126..14181 +
CDS_11736	CDS	CDS_11736:14461..14535 +
CDS_11736	CDS	CDS_11736:14747..14845 +
CDS_11736	CDS	CDS_11736:15156..15245 +
jgi.p\|Nanoce1779_2\|614873	gene	jgi.p\|Nanoce1779_2\|614873:16701..18404 +
jgi.p\|Nanoce1779_2\|614873	mRNA	jgi.p\|Nanoce1779_2\|614873:16701..18404 +
CDS_11738	CDS	CDS_11738:16940..16989 +
CDS_11738	CDS	CDS_11738:17184..17319 +
CDS_11738	CDS	CDS_11738:17615..17748 +
CDS_11738	CDS	CDS_11738:18111..18189 +
jgi.p\|Nanoce1779_2\|614890	gene	jgi.p\|Nanoce1779_2\|614890:21481..27187 -
jgi.p\|Nanoce1779_2\|614890	mRNA	jgi.p\|Nanoce1779_2\|614890:21481..27187 -
CDS_11739	CDS	CDS_11739:26378..27110 -
CDS_11739	CDS	CDS_11739:26146..26290 -
CDS_11739	CDS	CDS_11739:25847..25986 -
CDS_11739	CDS	CDS_11739:25511..25768 -
CDS_11739	CDS	CDS_11739:25323..25409 -
CDS_11739	CDS	CDS_11739:24812..25181 -
CDS_11739	CDS	CDS_11739:24299..24690 -
CDS_11739	CDS	CDS_11739:23000..24199 -
CDS_11739	CDS	CDS_11739:22696..22790 -
jgi.p\|Nanoce1779_2\|614895	gene	jgi.p\|Nanoce1779_2\|614895:27296..31916 +
jgi.p\|Nanoce1779_2\|614895	mRNA	jgi.p\|Nanoce1779_2\|614895:27296..31916 +
CDS_11741	CDS	CDS_11741:30939..31124 +
CDS_11741	CDS	CDS_11741:31254..31613 +
jgi.p\|Nanoce1779_2\|614906	gene	jgi.p\|Nanoce1779_2\|614906:28984..31916 +
jgi.p\|Nanoce1779_2\|614906	mRNA	jgi.p\|Nanoce1779_2\|614906:28984..31916 +
CDS_11740	CDS	CDS_11740:29035..29460 +
CDS_11740	CDS	CDS_11740:29564..29780 +
CDS_11740	CDS	CDS_11740:29930..30144 +
jgi.p\|Nanoce1779_2\|614909	gene	jgi.p\|Nanoce1779_2\|614909:32310..37786 -
jgi.p\|Nanoce1779_2\|614909	mRNA	jgi.p\|Nanoce1779_2\|614909:32310..37786 -
CDS_11742	CDS	CDS_11742:36977..37709 -
CDS_11742	CDS	CDS_11742:36745..36889 -
CDS_11742	CDS	CDS_11742:36425..36564 -
CDS_11742	CDS	CDS_11742:36083..36340 -
CDS_11742	CDS	CDS_11742:35908..35994 -
CDS_11742	CDS	CDS_11742:35390..35759 -
CDS_11742	CDS	CDS_11742:34876..35267 -
CDS_11742	CDS	CDS_11742:33577..34776 -
CDS_11742	CDS	CDS_11742:33273..33367 -
jgi.p\|Nanoce1779_2\|614938	gene	jgi.p\|Nanoce1779_2\|614938:45715..46904 -
jgi.p\|Nanoce1779_2\|614938	mRNA	jgi.p\|Nanoce1779_2\|614938:45715..46904 -
CDS_11745	CDS	CDS_11745:46842..46844 -
CDS_11745	CDS	CDS_11745:45715..46632 -
jgi.p\|Nanoce1779_2\|634548	gene	jgi.p\|Nanoce1779_2\|634548:38780..43007 +
jgi.p\|Nanoce1779_2\|634548	mRNA	jgi.p\|Nanoce1779_2\|634548:38780..43007 +
CDS_11744	CDS	CDS_11744:41232..41850 +
CDS_11744	CDS	CDS_11744:42101..42885 +
jgi.p\|Nanoce1779_2\|449870	polypeptide	jgi.p\|Nanoce1779_2\|449870:16020..16822 +
jgi.p\|Nanoce1779_2\|450689	polypeptide	jgi.p\|Nanoce1779_2\|450689:39595..40855 -
jgi.p\|Nanoce1779_2\|614860	polypeptide	jgi.p\|Nanoce1779_2\|614860:7269..7589 +
jgi.p\|Nanoce1779_2\|614862	polypeptide	jgi.p\|Nanoce1779_2\|614862:9194..10360 -
jgi.p\|Nanoce1779_2\|614866	polypeptide	jgi.p\|Nanoce1779_2\|614866:10902..15245 +
jgi.p\|Nanoce1779_2\|614873	polypeptide	jgi.p\|Nanoce1779_2\|614873:16940..18189 +
jgi.p\|Nanoce1779_2\|614890	polypeptide	jgi.p\|Nanoce1779_2\|614890:22696..27110 -
jgi.p\|Nanoce1779_2\|614895	polypeptide	jgi.p\|Nanoce1779_2\|614895:30939..31613 +
jgi.p\|Nanoce1779_2\|614906	polypeptide	jgi.p\|Nanoce1779_2\|614906:29035..30144 +
jgi.p\|Nanoce1779_2\|614909	polypeptide	jgi.p\|Nanoce1779_2\|614909:33273..37709 -
jgi.p\|Nanoce1779_2\|614938	polypeptide	jgi.p\|Nanoce1779_2\|614938:45715..46844 -
jgi.p\|Nanoce1779_2\|634548	polypeptide	jgi.p\|Nanoce1779_2\|634548:41232..42885 +
ncniL008	syntenic_region	ncniL008:7231..46904 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications