jgi.p|Nanoce1779_2|614906, mRNA_11740 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|614906
Unique Name	mRNA_11740
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2681
Alignment location	scaffold_93:28984..31916 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	614992
Track	FilteredModels2
ProteinId	614906

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_93	supercontig	scaffold_93:28984..31916 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|614906	gene_11740	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|614906	mRNA_11740-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11740	CDS_11740	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_93:28984..31916+
coding sequence from alignment at scaffold_93:28984..31916+

mRNA sequence

>mRNA_11740 ID=mRNA_11740|Name=jgi.p|Nanoce1779_2|614906|organism=Nannochloropsis oceanica|type=mRNA|length=2681bp
AGGCTCCGCTTTGGTCATTTGTCCTGCATTCCTATCTCACACGGCTAGAC
CATGACGCGTCAATTCTCTACAGCTCTCATCCTTGTCGCTAGCGTGGTAT
TGCCGACGGCGGTGCAAGGAAACATGAAAACAGGGATTTTTAATAAAATC
GCGGAGACTACACGCGATTTGCCGGTGACAACAGGTGGAGCCTCCCCATT
TGGAGAGCAAGTGGGTAGATTCTCCCTCGACGGGTTCATGGACACATTCG
AAGAGTTGACAGACAAACAATGGGGGACTCCGAGTACAACTCTTGATCTT
GACTTGATGGGCCTCTTGCGCAATGTCTTTGTATCGGAAGAAGGTCATAC
TCGGCTGTTGCAAGAGGCGTGGGGAGATCCTGAAATCCTTCGTACCCTTA
TGGATGATTTGCCCCTATTCGATGTTATTAAACCTTTGCGAGCGCTCAAG
GAGAAGAAAACATTGACACCTAGCGATGGATTCGAGGCTGTAGTGGCTCT
CAAAGATACCATGGGCAAGCTCCTTACGTCATTGCAGAGTATCCGTGACC
CAGAAAGTTTTGCTGAGAAGATTTATAAATATGCAACCAGCGAGGACCCA
AAATGGAAATCTTTGTTGGCACGAATCGAAGAAGGGGACACGACTTCTCA
TCTGGAGTCCCAGCAATTCCTTTTGAATGAGGAAATTGGTGACCTTATCG
ACCTAAAAGCTCTCGGTTTTGGTGGAGAATTACCCTCCCTAGTGACTAAA
GCGATCGAGACTACCAAACAAAACGAGCCATTGGTCTGGGGGAGTGTCTT
ATCTGACCCTATTGCGAGGCGCTTCCTGGACAATCCTATCCTGGCCGTCC
AAGAAGCGGTAGATGCTGCATCGGACTATGTGAAGAATGCGAAAGCGAGT
GCCCAGTAGCGGCCTAATTTTATCTTATGAGAAAATATGTGTGAAATACA
TACCATATTTCTATATCTATCTATTTTGATGTGATGTCATTCGCATTGCA
GCTAGGACCGATATATCGCATTTTATCAATACCTATTACACACAGATCAA
AGACAGCAAAATTAGATGGATGATGGGCAGCAGAAAACTAGAGAAGATAA
ACGAGGGATGATATGCAGGTTCATGTGACATATTTGCATACGGATGTGCA
AGGGAAAAAGTGGGTGCGGATGTACATCTTTGGAGTCCTGCTGACAAAAA
GTATTTGGTGTGATGTGTCAACAGAAGCAGACAAAGGAAAAGACGCAAAC
GTACTAAAAGATAAACTCATATCTGAGGCAAGAATCTTGGCCCAAGATAT
CCAGGCCGATCTTTCTCTGAATGTTCTTTGCCTTTTTCATATTTGTCAAA
GTTCCTTATGTTTGAAAGCCTTGTAGGCTGTGTTAATAACTGTAGACCCG
TAGTCCCTGATCAAGGAATAGAACCAGGGTAATAGAAGTCAGATACCTGA
TTTTTTATTGTCTCTTTTTCCTGCATGGAGGCGGGCTGTGTATTACGTAC
CCCTTCAACTTCCTCCAACTGCTGCCCAGATGGACAAACACTGACCTTAT
TGATTTTCATCTTATCAATTCGACACCCGTCCTCCGGATGTCAACTAACC
CTATCCCTAAAACGGCCTGTCTCAGCATCAAATGTCATGATAATCGTTAG
CGTTTGTTGGCTCTGACAGTCCAGATGCACGTCGTAGTACAGTAGACCTC
TGCATGCATTATGGTGTTATGTTCAGGTTGGACATCACATCATTACGACT
CGTTCTCATTCTGCAAATTATGCCTCCCAATACACCACTCAATAATTGGT
ATTCTCACACTGCAACAATGGTGCAGAGGAATTGGCCAGGGACACCACAA
AAGATGTCCAAATTTCGATGTGTATTACACATATCACACGTACGGGTGGA
GGGAACTGGGAAAAATAAAACAGGGGTCGAAAGCATATCGTACGGCAATT
TACTCAAGAAGTGATCAAACAATGTTTATCAAACATAATTTATCCTTCCC
ACTTACGTAATGGCACAGGTCTTGGCAATATCCATCTCTTTGGCGCACTT
CAACCGCTTAGCCACTAGCAGGACATTGCGTGAGGCAATCCGGGAAGTAC
TGGGAACGCAGGGGGCCCAGTATGGCGCATTGAAGAGGTATACTACGTCA
GGGGAAGAGGGAAGGAGGAGGAAAGGAGAAAGAAAGGAGGAGGGGAGGAG
AAGGAGACGGGGAGAGAAAGAGGAGAGGAAAAGGAGGAGTGGAACAGGTG
AGGAGCAGAGAAGGGGGAGGGGAAGAGCAGGGAGAAAGGATCGCGGAGGG
AAGGGGAAAGGGAGGTTGATTGGGGAAGAGGAGGAGAGTGGAAGGAGGAG
GAAGACAGGTGAGGAGAAGGGGAGGTGAGGAGGAGGAAGGAGGCGAAGGG
GGAGAACGAGGGGGAGGAGATGAGAGGGGAAGGGGAGGAGGAGGGGAGGA
GGAAGAGTAGCAGAGGATGCTCGGAGGAGAGGACGAGGGGAAAGGGATGA
CGGGGGGAGAGAGAGGTGAGGGGAAGGGAGGAGAAGGAGGGAAAGGGAGA
AAAGAGGGGAGGGGATGAGGAGGTGAGGAGATGTTGGAGGGGAAGGAGGT
GATAAGTAGAGAGGAGAAGGAAAAGGAAAGGAGGAGGGGAGAAGTAGAGA
GGAGAAGGAAAAGGAAAGGAGGTGGGGAGAA

protein sequence of jgi.p|Nanoce1779_2|614906

>mRNA_11740-protein ID=mRNA_11740-protein|Name=jgi.p|Nanoce1779_2|614906|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MTRQFSTALILVASVVLPTAVQGNMKTGIFNKIAETTRDLPVTTGGASPF
GEQVGRFSLDGFMDTFEELTDKQWGTPSTTLDLDLMGLLRNVFVSEEGHT
RLLQEAWGDPEILRTLMDDLPLFDVIKPLRALKEKKTLTPSDGFEAVVAL
KDTMGKLLTSLQSIRDPESFAEKIYKYATSEDPKWKSLLARIEEGDTTSH
LESQQFLLNEEIGDLIDLKALGFGGELPSLVTKAIETTKQNEPLVWGSVL
SDPIARRFLDNPILAVQEAVDAASDYVKNAKASAQ*

mRNA from alignment at scaffold_93:28984..31916+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11740 ID=mRNA_11740|Name=jgi.p|Nanoce1779_2|614906|organism=Nannochloropsis oceanica|type=mRNA|length=2933bp|location=Sequence derived from alignment at scaffold_93:28984..31916+ (Nannochloropsis oceanica)
AGGCTCCGCTTTGGTCATTTGTCCTGCATTCCTATCTCACACGGCTAGAC
CATGACGCGTCAATTCTCTACAGCTCTCATCCTTGTCGCTAGCGTGGTAT
TGCCGACGGCGGTGCAAGGAAACATGAAAACAGGGATTTTTAATAAAATC
GCGGAGACTACACGCGATTTGCCGGTGACAACAGGTGGAGCCTCCCCATT
TGGAGAGCAAGTGGGTAGATTCTCCCTCGACGGGTTCATGGACACATTCG
AAGAGTTGACAGACAAACAATGGGGGACTCCGAGTACAACTCTTGATCTT
GACTTGATGGGCCTCTTGCGCAATGTCTTTGTATCGGAAGAAGGTCATAC
TCGGCTGTTGCAAGAGGCGTGGGGAGATCCTGAAATCCTTCGTACCCTTA
TGGATGATTTGCCCCTATTCGATGTTATTAAACCTTTGCGAGCGCTCAAG
GAGAAGAAAACATTGACACCTAGCGATGTAAGTGAGATAGTGTAAAAGGA
GTGAGTATACCAATATAACGATCAGCAGGCACATGGAAATACTTGGCGCA
ATTTTCAAAGCAAATCTTCACGCATCACAGGGATTCGAGGCTGTAGTGGC
TCTCAAAGATACCATGGGCAAGCTCCTTACGTCATTGCAGAGTATCCGTG
ACCCAGAAAGTTTTGCTGAGAAGATTTATAAATATGCAACCAGCGAGGAC
CCAAAATGGAAATCTTTGTTGGCACGAATCGAAGAAGGGGACACGACTTC
TCATCTGGAGTCCCAGCAATTCCTTTTGAATGAGGAAATTGGTGACCGTA
AGTAATGAATGTAGTGGGCATACATATACATCTATCCAATGGCCATGTCA
GGATTTCATTGTGCCCTCTACCTCTCAGCCTTTATTCAATTGCAGTTTCC
GATACAATGATTCTAAGTCACTACACCCACATATAATCTATACCAGTTAT
CGACCTAAAAGCTCTCGGTTTTGGTGGAGAATTACCCTCCCTAGTGACTA
AAGCGATCGAGACTACCAAACAAAACGAGCCATTGGTCTGGGGGAGTGTC
TTATCTGACCCTATTGCGAGGCGCTTCCTGGACAATCCTATCCTGGCCGT
CCAAGAAGCGGTAGATGCTGCATCGGACTATGTGAAGAATGCGAAAGCGA
GTGCCCAGTAGCGGCCTAATTTTATCTTATGAGAAAATATGTGTGAAATA
CATACCATATTTCTATATCTATCTATTTTGATGTGATGTCATTCGCATTG
CAGCTAGGACCGATATATCGCATTTTATCAATACCTATTACACACAGATC
AAAGACAGCAAAATTAGATGGATGATGGGCAGCAGAAAACTAGAGAAGAT
AAACGAGGGATGATATGCAGGTTCATGTGACATATTTGCATACGGATGTG
CAAGGGAAAAAGTGGGTGCGGATGTACATCTTTGGAGTCCTGCTGACAAA
AAGTATTTGGTGTGATGTGTCAACAGAAGCAGACAAAGGAAAAGACGCAA
ACGTACTAAAAGATAAACTCATATCTGAGGCAAGAATCTTGGCCCAAGAT
ATCCAGGCCGATCTTTCTCTGAATGTTCTTTGCCTTTTTCATATTTGTCA
AAGTTCCTTATGTTTGAAAGCCTTGTAGGCTGTGTTAATAACTGTAGACC
CGTAGTCCCTGATCAAGGAATAGAACCAGGGTAATAGAAGTCAGATACCT
GATTTTTTATTGTCTCTTTTTCCTGCATGGAGGCGGGCTGTGTATTACGT
ACCCCTTCAACTTCCTCCAACTGCTGCCCAGATGGACAAACACTGACCTT
ATTGATTTTCATCTTATCAATTCGACACCCGTCCTCCGGATGTCAACTAA
CCCTATCCCTAAAACGGCCTGTCTCAGCATCAAATGTCATGATAATCGTT
AGCGTTTGTTGGCTCTGACAGTCCAGATGCACGTCGTAGTACAGTAGACC
TCTGCATGCATTATGGTGTTATGTTCAGGTTGGACATCACATCATTACGA
CTCGTTCTCATTCTGCAAATTATGCCTCCCAATACACCACTCAATAATTG
GTATTCTCACACTGCAACAATGGTGCAGAGGAATTGGCCAGGGACACCAC
AAAAGATGTCCAAATTTCGATGTGTATTACACATATCACACGTACGGGTG
GAGGGAACTGGGAAAAATAAAACAGGGGTCGAAAGCATATCGTACGGCAA
TTTACTCAAGAAGTGATCAAACAATGTTTATCAAACATAATTTATCCTTC
CCACTTACGTAATGGCACAGGTCTTGGCAATATCCATCTCTTTGGCGCAC
TTCAACCGCTTAGCCACTAGCAGGACATTGCGTGAGGCAATCCGGGAAGT
ACTGGGAACGCAGGGGGCCCAGTATGGCGCATTGAAGAGGTATACTACGT
CAGGGGAAGAGGGAAGGAGGAGGAAAGGAGAAAGAAAGGAGGAGGGGAGG
AGAAGGAGACGGGGAGAGAAAGAGGAGAGGAAAAGGAGGAGTGGAACAGG
TGAGGAGCAGAGAAGGGGGAGGGGAAGAGCAGGGAGAAAGGATCGCGGAG
GGAAGGGGAAAGGGAGGTTGATTGGGGAAGAGGAGGAGAGTGGAAGGAGG
AGGAAGACAGGTGAGGAGAAGGGGAGGTGAGGAGGAGGAAGGAGGCGAAG
GGGGAGAACGAGGGGGAGGAGATGAGAGGGGAAGGGGAGGAGGAGGGGAG
GAGGAAGAGTAGCAGAGGATGCTCGGAGGAGAGGACGAGGGGAAAGGGAT
GACGGGGGGAGAGAGAGGTGAGGGGAAGGGAGGAGAAGGAGGGAAAGGGA
GAAAAGAGGGGAGGGGATGAGGAGGTGAGGAGATGTTGGAGGGGAAGGAG
GTGATAAGTAGAGAGGAGAAGGAAAAGGAAAGGAGGAGGGGAGAAGTAGA
GAGGAGAAGGAAAAGGAAAGGAGGTGGGGAGAA

Coding sequence (CDS) from alignment at scaffold_93:28984..31916+

>mRNA_11740 ID=mRNA_11740|Name=jgi.p|Nanoce1779_2|614906|organism=Nannochloropsis oceanica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_93:28984..31916+ (Nannochloropsis oceanica)
ATGACGCGTCAATTCTCTACAGCTCTCATCCTTGTCGCTAGCGTGGTATT
GCCGACGGCGGTGCAAGGAAACATGAAAACAGGGATTTTTAATAAAATCG
CGGAGACTACACGCGATTTGCCGGTGACAACAGGTGGAGCCTCCCCATTT
GGAGAGCAAGTGGGTAGATTCTCCCTCGACGGGTTCATGGACACATTCGA
AGAGTTGACAGACAAACAATGGGGGACTCCGAGTACAACTCTTGATCTTG
ACTTGATGGGCCTCTTGCGCAATGTCTTTGTATCGGAAGAAGGTCATACT
CGGCTGTTGCAAGAGGCGTGGGGAGATCCTGAAATCCTTCGTACCCTTAT
GGATGATTTGCCCCTATTCGATGTTATTAAACCTTTGCGAGCGCTCAAGG
AGAAGAAAACATTGACACCTAGCGATGGATTCGAGGCTGTAGTGGCTCTC
AAAGATACCATGGGCAAGCTCCTTACGTCATTGCAGAGTATCCGTGACCC
AGAAAGTTTTGCTGAGAAGATTTATAAATATGCAACCAGCGAGGACCCAA
AATGGAAATCTTTGTTGGCACGAATCGAAGAAGGGGACACGACTTCTCAT
CTGGAGTCCCAGCAATTCCTTTTGAATGAGGAAATTGGTGACCTTATCGA
CCTAAAAGCTCTCGGTTTTGGTGGAGAATTACCCTCCCTAGTGACTAAAG
CGATCGAGACTACCAAACAAAACGAGCCATTGGTCTGGGGGAGTGTCTTA
TCTGACCCTATTGCGAGGCGCTTCCTGGACAATCCTATCCTGGCCGTCCA
AGAAGCGGTAGATGCTGCATCGGACTATGTGAAGAATGCGAAAGCGAGTG
CCCAGTAGATGACGCGTCAATTCTCTACAGCTCTCATCCTTGTCGCTAGC
GTGGTATTGCCGACGGCGGTGCAAGGAAACATGAAAACAGGGATTTTTAA
TAAAATCGCGGAGACTACACGCGATTTGCCGGTGACAACAGGTGGAGCCT
CCCCATTTGGAGAGCAAGTGGGTAGATTCTCCCTCGACGGGTTCATGGAC
ACATTCGAAGAGTTGACAGACAAACAATGGGGGACTCCGAGTACAACTCT
TGATCTTGACTTGATGGGCCTCTTGCGCAATGTCTTTGTATCGGAAGAAG
GTCATACTCGGCTGTTGCAAGAGGCGTGGGGAGATCCTGAAATCCTTCGT
ACCCTTATGGATGATTTGCCCCTATTCGATGTTATTAAACCTTTGCGAGC
GCTCAAGGAGAAGAAAACATTGACACCTAGCGATGGATTCGAGGCTGTAG
TGGCTCTCAAAGATACCATGGGCAAGCTCCTTACGTCATTGCAGAGTATC
CGTGACCCAGAAAGTTTTGCTGAGAAGATTTATAAATATGCAACCAGCGA
GGACCCAAAATGGAAATCTTTGTTGGCACGAATCGAAGAAGGGGACACGA
CTTCTCATCTGGAGTCCCAGCAATTCCTTTTGAATGAGGAAATTGGTGAC
CTTATCGACCTAAAAGCTCTCGGTTTTGGTGGAGAATTACCCTCCCTAGT
GACTAAAGCGATCGAGACTACCAAACAAAACGAGCCATTGGTCTGGGGGA
GTGTCTTATCTGACCCTATTGCGAGGCGCTTCCTGGACAATCCTATCCTG
GCCGTCCAAGAAGCGGTAGATGCTGCATCGGACTATGTGAAGAATGCGAA
AGCGAGTGCCCAGTAGATGACGCGTCAATTCTCTACAGCTCTCATCCTTG
TCGCTAGCGTGGTATTGCCGACGGCGGTGCAAGGAAACATGAAAACAGGG
ATTTTTAATAAAATCGCGGAGACTACACGCGATTTGCCGGTGACAACAGG
TGGAGCCTCCCCATTTGGAGAGCAAGTGGGTAGATTCTCCCTCGACGGGT
TCATGGACACATTCGAAGAGTTGACAGACAAACAATGGGGGACTCCGAGT
ACAACTCTTGATCTTGACTTGATGGGCCTCTTGCGCAATGTCTTTGTATC
GGAAGAAGGTCATACTCGGCTGTTGCAAGAGGCGTGGGGAGATCCTGAAA
TCCTTCGTACCCTTATGGATGATTTGCCCCTATTCGATGTTATTAAACCT
TTGCGAGCGCTCAAGGAGAAGAAAACATTGACACCTAGCGATGGATTCGA
GGCTGTAGTGGCTCTCAAAGATACCATGGGCAAGCTCCTTACGTCATTGC
AGAGTATCCGTGACCCAGAAAGTTTTGCTGAGAAGATTTATAAATATGCA
ACCAGCGAGGACCCAAAATGGAAATCTTTGTTGGCACGAATCGAAGAAGG
GGACACGACTTCTCATCTGGAGTCCCAGCAATTCCTTTTGAATGAGGAAA
TTGGTGACCTTATCGACCTAAAAGCTCTCGGTTTTGGTGGAGAATTACCC
TCCCTAGTGACTAAAGCGATCGAGACTACCAAACAAAACGAGCCATTGGT
CTGGGGGAGTGTCTTATCTGACCCTATTGCGAGGCGCTTCCTGGACAATC
CTATCCTGGCCGTCCAAGAAGCGGTAGATGCTGCATCGGACTATGTGAAG
AATGCGAAAGCGAGTGCCCAGTAG

Synonyms

Publications