jgi.p|Nanoce1779_2|614873, mRNA_11738 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|614873
Unique NamemRNA_11738
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length664
Alignment locationscaffold_93:16701..18404 +

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Properties
Property NameValue
TranscriptId614959
TrackFilteredModels2
ProteinId614873
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:16701..18404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614873gene_11738Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614873mRNA_11738-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11738CDS_11738Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11738 ID=mRNA_11738|Name=jgi.p|Nanoce1779_2|614873|organism=Nannochloropsis oceanica|type=mRNA|length=664bp
AGGGCCACGCCAAGGTGGTGACGGAGCTGCTGCAGCACCATGCAGACGTG
ATGGCCAAGGACGACAATGGCCTCACGCCCCTCCACAGGGCTGCCTACTG
GGGCCAGACGACCTGCGTGAGGGAGCTGCTCAAGGCCGGGGCGGACCCAG
ATGCGCAGGACAACCTGCAGCACACGCCCTTCATGATGGCGGCATGGTTC
GGCAAGATAGATTCCGCCCGCGAGATCTTTGAGGAGATGAAGCCTCAGCA
GATCCAGCTGCCCAACGTGTGGGGTCTAACACCCTTGGAGTGGGCCAGAC
AGAGCAATCGGCCCGAGGTGGCCGCCTTTATCGAGCGTCGTTATAGCAAG
CTAGGTCTGCCGATTGAGCGCGGAAGTAGTGGAGGGGAAGGCAACAACAG
AAAACCTCCCCCACCCCCGCCTGCACCGGCCCAAACTGACTTGCGGTGAT
TATAAAGAAGAATTGACAGGAGCCGCTAGGGAGGATCATGGAGGACAGAG
TGGGAAGAAATTGTGGAGGGACGAAGAGCAGTGAAAGAGAACGGCAAAGA
TGCAAGAATGAAAAAATAGTTCGAAATGTCTTCTTGATTAACGGCTTTCA
ATGGGCACTCCAAAAAATGTACTCACTTAGAGAAAGGCCTCTTCCTTACA
TTTTTTGGGGCCAC
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protein sequence of jgi.p|Nanoce1779_2|614873

>mRNA_11738-protein ID=mRNA_11738-protein|Name=jgi.p|Nanoce1779_2|614873|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MAKDDNGLTPLHRAAYWGQTTCVRELLKAGADPDAQDNLQHTPFMMAAWF
GKIDSAREIFEEMKPQQIQLPNVWGLTPLEWARQSNRPEVAAFIERRYSK
LGLPIERGSSGGEGNNRKPPPPPPAPAQTDLR*
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mRNA from alignment at scaffold_93:16701..18404+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11738 ID=mRNA_11738|Name=jgi.p|Nanoce1779_2|614873|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp|location=Sequence derived from alignment at scaffold_93:16701..18404+ (Nannochloropsis oceanica)
AGGGCCACGCCAAGGTGGTGACGGTACGTCGCTTTGCGTGCTCTTTTTCT
CTCAACTTTCTGTCGTGCTCCAGTGCTGACGCTTTGGCCTCCTTGCTTCG
TTCTTCATTAGCGATTGATTGACTCCGCCTCCTCCCTGCTTCTAATCTCC
CCTTCCTCCTCTTCCTCCTCCTCCTAATCTTCTTCTTCCTTTTATACTTT
CCTTTCTCACAGGAGCTGCTGCAGCACCATGCAGACGTGATGGCCAAGGA
CGACAATGGCCTCACGCCCCTCCACAGGGCTGCCTACTGGTACGGAGGCA
GGAGGGAGGGAGGGACGGAGGGATGGAGGGAAGGTTCTCTCTCTGCTCTG
GGGGCTAGAATTGGTGATACCTCGAGGAAAATGAATAGGCGTGGCGATGT
CTTCGTTAAATAGCCATCAGTCTTACGGTTCCTCTTCCCTCCTGCTTCCC
TTTCTCCCTCCCTCCCTCCCCCTTTCTTCCCAGGGGCCAGACGACCTGCG
TGAGGGAGCTGCTCAAGGCCGGGGCGGACCCAGATGCGCAGGACAACCTG
CAGCACACGCCCTTCATGATGGCGGCATGGTTCGGCAAGATAGATTCCGC
CCGCGAGATCTTTGAGGAGGTGGGGAGGGGGGGAGGGAGGAAGGGAGGGA
GGGATGGAGGGAGGGAGGGGATATTGGGAACATATGGGAGGCTTTTCTGC
CTTCTTCTTCAACAGGACAGAGCGAGAGATACGGGACGACGCCGCAGAGC
TGTGAGGGTGCAGCGCTCCTCTCTATCTCCCTTCTCGTCTCAATCTCTTC
CTCCCCATTCGCTGAATCGTAATCAACGGCCCATCACGCCAAGGCCTATG
CACTTCACTCACTCACCTCGCCCATATCCCCCTTCCCGCCTTCCTCCCTT
TCCCTTGCCCCTAGATGAAGCCTCAGCAGATCCAGCTGCCCAACGTGTGG
GGTCTAACACCCTTGGAGTGGGCCAGACAGAGCAATCGGCCCGAGGTGGC
CGCCTTTATCGAGCGTCGTTATAGCAAGCTAGGTCTGCCGATTGAGCGGT
AGGGGGGGGGGGGGGGGGGGAGGAAGAGGGGGAGGGAGGAGAAGAGGAAG
AGACGGGGAGTCCACGAATGTGTAGTCATGGGTCCTGGCGTTTGTTTGTT
TCTCTTCTATTGTCCCCCTAGGGAGGTGTCCTTTGTTCCCGCCTCTCGAT
TTTGATTACTTCGTCTTCCCCTATCCCCTCCGGACTCATCCAGGCCCAAC
CCCAGCACGGGCAGCCGCTCCTCCGTCCCGCCTTCCCCCCTCGCCGTTGT
ACTCCGCAGCTGCATCCCCGTTCATCGACTCCAGCACGCCTACGACAAGT
AGCACGGCCATGAGCAGCAGCCAGGGGGGAGGGGGGGGGGGATGCCGCCT
CTCCTGCTAGCGGAAGTAGTGGAGGGGAAGGCAACAACAGAAAACCTCCC
CCACCCCCGCCTGCACCGGCCCAAACTGACTTGCGGTGATTATAAAGAAG
AATTGACAGGAGCCGCTAGGGAGGATCATGGAGGACAGAGTGGGAAGAAA
TTGTGGAGGGACGAAGAGCAGTGAAAGAGAACGGCAAAGATGCAAGAATG
AAAAAATAGTTCGAAATGTCTTCTTGATTAACGGCTTTCAATGGGCACTC
CAAAAAATGTACTCACTTAGAGAAAGGCCTCTTCCTTACATTTTTTGGGG
CCAC
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Coding sequence (CDS) from alignment at scaffold_93:16701..18404+

>mRNA_11738 ID=mRNA_11738|Name=jgi.p|Nanoce1779_2|614873|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at scaffold_93:16701..18404+ (Nannochloropsis oceanica)
ATGGCCAAGGACGACAATGGCCTCACGCCCCTCCACAGGGCTGCCTACTG
GGGCCAGACGACCTGCGTGAGGGAGCTGCTCAAGGCCGGGGCGGACCCAG
ATGCGCAGGACAACCTGCAGCACACGCCCTTCATGATGGCGGCATGGTTC
GGCAAGATAGATTCCGCCCGCGAGATCTTTGAGGAGATGAAGCCTCAGCA
GATCCAGCTGCCCAACGTGTGGGGTCTAACACCCTTGGAGTGGGCCAGAC
AGAGCAATCGGCCCGAGGTGGCCGCCTTTATCGAGCGTCGTTATAGCAAG
CTAGGTCTGCCGATTGAGCGCGGAAGTAGTGGAGGGGAAGGCAACAACAG
AAAACCTCCCCCACCCCCGCCTGCACCGGCCCAAACTGACTTGCGGTGAA
TGGCCAAGGACGACAATGGCCTCACGCCCCTCCACAGGGCTGCCTACTGG
GGCCAGACGACCTGCGTGAGGGAGCTGCTCAAGGCCGGGGCGGACCCAGA
TGCGCAGGACAACCTGCAGCACACGCCCTTCATGATGGCGGCATGGTTCG
GCAAGATAGATTCCGCCCGCGAGATCTTTGAGGAGATGAAGCCTCAGCAG
ATCCAGCTGCCCAACGTGTGGGGTCTAACACCCTTGGAGTGGGCCAGACA
GAGCAATCGGCCCGAGGTGGCCGCCTTTATCGAGCGTCGTTATAGCAAGC
TAGGTCTGCCGATTGAGCGCGGAAGTAGTGGAGGGGAAGGCAACAACAGA
AAACCTCCCCCACCCCCGCCTGCACCGGCCCAAACTGACTTGCGGTGAAT
GGCCAAGGACGACAATGGCCTCACGCCCCTCCACAGGGCTGCCTACTGGG
GCCAGACGACCTGCGTGAGGGAGCTGCTCAAGGCCGGGGCGGACCCAGAT
GCGCAGGACAACCTGCAGCACACGCCCTTCATGATGGCGGCATGGTTCGG
CAAGATAGATTCCGCCCGCGAGATCTTTGAGGAGATGAAGCCTCAGCAGA
TCCAGCTGCCCAACGTGTGGGGTCTAACACCCTTGGAGTGGGCCAGACAG
AGCAATCGGCCCGAGGTGGCCGCCTTTATCGAGCGTCGTTATAGCAAGCT
AGGTCTGCCGATTGAGCGCGGAAGTAGTGGAGGGGAAGGCAACAACAGAA
AACCTCCCCCACCCCCGCCTGCACCGGCCCAAACTGACTTGCGGTGAATG
GCCAAGGACGACAATGGCCTCACGCCCCTCCACAGGGCTGCCTACTGGGG
CCAGACGACCTGCGTGAGGGAGCTGCTCAAGGCCGGGGCGGACCCAGATG
CGCAGGACAACCTGCAGCACACGCCCTTCATGATGGCGGCATGGTTCGGC
AAGATAGATTCCGCCCGCGAGATCTTTGAGGAGATGAAGCCTCAGCAGAT
CCAGCTGCCCAACGTGTGGGGTCTAACACCCTTGGAGTGGGCCAGACAGA
GCAATCGGCCCGAGGTGGCCGCCTTTATCGAGCGTCGTTATAGCAAGCTA
GGTCTGCCGATTGAGCGCGGAAGTAGTGGAGGGGAAGGCAACAACAGAAA
ACCTCCCCCACCCCCGCCTGCACCGGCCCAAACTGACTTGCGGTGA
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Synonyms
Publications