jgi.p|Nanoce1779_2|449870, mRNA_11737 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|449870
Unique NamemRNA_11737
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length698
Alignment locationscaffold_93:15931..17044 +

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Properties
Property NameValue
TranscriptId449956
TrackFilteredModels2
ProteinId449870
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:15931..17044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|449870gene_11737Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|449870mRNA_11737-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11737CDS_11737Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11737 ID=mRNA_11737|Name=jgi.p|Nanoce1779_2|449870|organism=Nannochloropsis oceanica|type=mRNA|length=698bp
AAGAGAGACAAGCGAAGCAACCCTCTCTTACTGCTCAACGAAATCACCCT
CCCAGACAGCTACCAGCGGGCGCCAAACGCGCTCCAGCTATGGGCCTTAT
CGATGAAGTCTTTCAGCTCATCCAGGGCCGGGGGAGTAGTGACAAGAACG
AGGCGGAGCTGGGACGCTTGCGCCTGCTGCTCAGTCAGCACAAGGAACTA
GTCCATGCGAAAGGACGAATAGACGAGGAGACGCCTTTGCACTTAGCGGC
TGCAGAGGGCCAGCTGGATGTGGTCCAGCTCCTCCTCCAATCGGGAGCCA
ACGCCTCCGCCGCTGACAAAGCGCGGTATACGCCTCTCCACTGGGCAGCC
GGCAAGGGCCACGCCAAGGTGGTGACGGTACGTCGCTTTGCGTGCTCTTT
TTCTCTCAACTTTCTGTCGTGCTCCAGTGCTGACGCTTTGGCCTCCTTGC
TTCGTTCTTCATTAGCGATTGATTGACTCCGCCTCCTCCCTGCTTCTAAT
CTCCCCTTCCTCCTCTTCCTCCTCCTCCTAATCTTCTTCTTCCTTTTATA
CTTTCCTTTCTCACAGGAGCTGCTGCAGCACCATGCAGACGTGATGGCCA
AGGACGACAATGGCCTCACGCCCCTCCACAGGGCTGCCTACTGGTACGGA
GGCAGGAGGGAGGGAGGGACGGAGGGATGGAGGGAAGGTTCTCTCTCT
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protein sequence of jgi.p|Nanoce1779_2|449870

>mRNA_11737-protein ID=mRNA_11737-protein|Name=jgi.p|Nanoce1779_2|449870|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MGLIDEVFQLIQGRGSSDKNEAELGRLRLLLSQHKELVHAKGRIDEETPL
HLAAAEGQLDVVQLLLQSGANASAADKARYTPLHWAAGKGHAKVVTVRRF
ACSFSLNFLSCSSADALASLLRSSLAID*
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mRNA from alignment at scaffold_93:15931..17044+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11737 ID=mRNA_11737|Name=jgi.p|Nanoce1779_2|449870|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp|location=Sequence derived from alignment at scaffold_93:15931..17044+ (Nannochloropsis oceanica)
AAGAGAGACAAGCGAAGCAACCCTCTCTTACTGCTCAACGAAATCACCCT
CCCAGACAGCTACCAGCGGGCGCCAAACGCGCTCCAGCTATGGGCCTTAT
CGATGAAGTCTTTCAGCTCATCCAGGGCCGGGGGAGTAGTGACAAGAACG
AGGCGGAGCTGGGACGCTTGCGCCTGCTGCTCAGTCAGCACAAGGTATGT
GATGATCAAGCATGGGGGCGGACGGGCAGGGGAATTGCTAGCTGCCATGC
GACCAGCAGTGTGATTGGCGTATTGCTGAGGAATATGAATTAGAAGGGTA
GTTGCCTGCCGCGCTCTACATTCACTAGTCTTCATGTTTGTTTTGCTTTA
TGCATATACTCACTTTGTCATCTTCCCTACGTTCCATCCCCCACTCTCGC
ACAGGAACTAGTCCATGCGAAAGGACGAATAGACGAGGAGACGCCTTTGC
ACTTAGCGGCTGCAGAGGTGCGAATTGTGGATGTTGATGTGGAGGGGGGA
AGGGAAGAAAAAGAGGGGCGGAGAGAGGGTGGGAGTGAAATGTATAGAAT
CGGGCGCAAATGGCAGAAATTCCTGGCCGTACACTAATGTACGCGCCGGC
ATCCTTTTCTCTTCACCGTTCCCTTCCTTTAACGCTTAGCTACTCTCTGA
CCCTCCCTTGCCTGTACCTACAGGGCCAGCTGGATGTGGTCCAGCTCCTC
CTCCAATCGGGAGCCAACGCCTCCGCCGCTGACAAAGCGCGGTATACGCC
TCTCCACTGGGCAGCCGGCAAGGGCCACGCCAAGGTGGTGACGGTACGTC
GCTTTGCGTGCTCTTTTTCTCTCAACTTTCTGTCGTGCTCCAGTGCTGAC
GCTTTGGCCTCCTTGCTTCGTTCTTCATTAGCGATTGATTGACTCCGCCT
CCTCCCTGCTTCTAATCTCCCCTTCCTCCTCTTCCTCCTCCTCCTAATCT
TCTTCTTCCTTTTATACTTTCCTTTCTCACAGGAGCTGCTGCAGCACCAT
GCAGACGTGATGGCCAAGGACGACAATGGCCTCACGCCCCTCCACAGGGC
TGCCTACTGGTACGGAGGCAGGAGGGAGGGAGGGACGGAGGGATGGAGGG
AAGGTTCTCTCTCT
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Coding sequence (CDS) from alignment at scaffold_93:15931..17044+

>mRNA_11737 ID=mRNA_11737|Name=jgi.p|Nanoce1779_2|449870|organism=Nannochloropsis oceanica|type=CDS|length=1161bp|location=Sequence derived from alignment at scaffold_93:15931..17044+ (Nannochloropsis oceanica)
ATGGGCCTTATCGATGAAGTCTTTCAGCTCATCCAGGGCCGGGGGAGTAG
TGACAAGAACGAGGCGGAGCTGGGACGCTTGCGCCTGCTGCTCAGTCAGC
ACAAGGAACTAGTCCATGCGAAAGGACGAATAGACGAGGAGACGCCTTTG
CACTTAGCGGCTGCAGAGGGCCAGCTGGATGTGGTCCAGCTCCTCCTCCA
ATCGGGAGCCAACGCCTCCGCCGCTGACAAAGCGCGGTATACGCCTCTCC
ACTGGGCAGCCGGCAAGGGCCACGCCAAGGTGGTGACGGTACGTCGCTTT
GCGTGCTCTTTTTCTCTCAACTTTCTGTCGTGCTCCAGTGCTGACGCTTT
GGCCTCCTTGCTTCGTTCTTCATTAGCGATTGATTGAATGGGCCTTATCG
ATGAAGTCTTTCAGCTCATCCAGGGCCGGGGGAGTAGTGACAAGAACGAG
GCGGAGCTGGGACGCTTGCGCCTGCTGCTCAGTCAGCACAAGGAACTAGT
CCATGCGAAAGGACGAATAGACGAGGAGACGCCTTTGCACTTAGCGGCTG
CAGAGGGCCAGCTGGATGTGGTCCAGCTCCTCCTCCAATCGGGAGCCAAC
GCCTCCGCCGCTGACAAAGCGCGGTATACGCCTCTCCACTGGGCAGCCGG
CAAGGGCCACGCCAAGGTGGTGACGGTACGTCGCTTTGCGTGCTCTTTTT
CTCTCAACTTTCTGTCGTGCTCCAGTGCTGACGCTTTGGCCTCCTTGCTT
CGTTCTTCATTAGCGATTGATTGAATGGGCCTTATCGATGAAGTCTTTCA
GCTCATCCAGGGCCGGGGGAGTAGTGACAAGAACGAGGCGGAGCTGGGAC
GCTTGCGCCTGCTGCTCAGTCAGCACAAGGAACTAGTCCATGCGAAAGGA
CGAATAGACGAGGAGACGCCTTTGCACTTAGCGGCTGCAGAGGGCCAGCT
GGATGTGGTCCAGCTCCTCCTCCAATCGGGAGCCAACGCCTCCGCCGCTG
ACAAAGCGCGGTATACGCCTCTCCACTGGGCAGCCGGCAAGGGCCACGCC
AAGGTGGTGACGGTACGTCGCTTTGCGTGCTCTTTTTCTCTCAACTTTCT
GTCGTGCTCCAGTGCTGACGCTTTGGCCTCCTTGCTTCGTTCTTCATTAG
CGATTGATTGA
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Synonyms
Publications