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Properties
Property Name | Value |
TranscriptId | 614981 |
Track | FilteredModels2 |
ProteinId | 614895 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_93 | supercontig | scaffold_93:27296..31916 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11741 ID=mRNA_11741|Name=jgi.p|Nanoce1779_2|614895|organism=Nannochloropsis oceanica|type=mRNA|length=4492bp GGTGATTGAAGCTGTCTCCCGATAATCGATCAACGGCGAGTCACATTTAA GCCCTGATCGCCAGAAAGTGCATTTTTAAAAACAAATACCGCGGATGGAC GCCAATAAATACCTCTACATCGACCCATGCATATATTTGTGCAGTATAAT GTGTAAGTAACGCACGCATACACTTCTCACAAAGTATCTAACGACACATG ACTACACGAATGTAAGGGACGCCTCATACTTTGATGCTGGACAGTAATCA ATATACATTCTGTATGCTAATTCTGTACTGTGTGCATGCCGTTAGTATCC TCTCAAGTAGACCAAAGAGACGCAATTATGGTAGTGAATTACTTGGCGAG TATATGTGTTGATGAGATTCTGGAAAAAAAGGTAAACCATCATGTCTACA ATTTTCCAATTTGGAACCATACTTTCTGTTATCACAATAGTTCAAGGACA GAGGAGCACTTTGCTTATAGAAAACTATTGTGACAAGCTTTATGATTGTT CTCATGACTGAATTTTATATATATGTCTTATACGTTTATCGAGAAGATTC ATGTAATAATAATTATCGAGAAGATTCATGTGACAATAATGTCTAAAGAT TCATGTAATTTGAAAATACTAAATTATGGACATATTTAATTCCAAATCAT ATGTGTGGTCGAATAAAGCATATTCTTACATCGTTGGTAAATTATGCACG GGAAGAGGGGAATAATGATCGGGAAACGAAGCTAAAACCATAGATCTTTG CCTGACAAATTTCTTAAATCAATAAAGTATCTTTATCCAATTACAAGATT CAATAAGAACTCTCATATCAACGAGTGAGGATTCGATACTATAGGAAAGC AAGCTTGATTATAACTATTGAACAACAATACACATGCCCCTGAAAGTATC TCCTAGCGACATCAATTGCCAGGTCTATGAGTAGCGCTGATCCATGACGA GTCTCTACCATGCAGAGATTCTTTATTTTTTACACTTTCTGTTGTTGGTC ATGGGATAAGCGCTAATCTTGGATTTATCAAGTGGCATTGCTTAAAATTG CTCATCAACACAGACAACATTATTTTTTTTCGGTCGTTCCCTGGCCCACT AATACATTATTATATGTAGTGGAGAAGATTCATGTAAAAAATAGAGCATC TATATAGAATATTCACCTGAATAAAGATTCAATTTGGGTCAAATATATCC GAGCTAAATAAAACAATTGGCAGCACAGATCGCCAGGTCGAAGTGCTTCG CCCGAGACGAGTAATATTCGGATTTTGGAAACAGGAATCAATTAAAATCA CTGTATATAATCCTTTCTCCCAACAAAAGCTAGACTGTATATAAAGATGT GAAATATAAATTTGTATACGGAGGAGAGCTATGCTGTCCATCTCAATTTA TCTTACAATTGAGACAGTGAAGGTTTTGCACCGAACTCGTACACAGTAAG CAGCGTTCTCCTTTTTCTCGATTCTCATCCAGTGCTTCTTTCTGTCAAAA AATTGATTTGTGCGATTCTGCGGCTTACACAAATTCCTTTTTCCACCGAT GCGTTGCATTTATGACCCAACTGCAGTACAAATCCTTGCATGTGGTGGCC TTGCGGCTTCGCGATGCAATGGTATGCTTACAAATATTGACACAACTGAC TTTGTGTCCCCCCCTTCTATGTATTTATCTCCCATCCTAGGCTCCGCTTT GGTCATTTGTCCTGCATTCCTATCTCACACGGCTAGACCATGACGCGTCA ATTCTCTACAGCTCTCATCCTTGTCGCTAGCGTGGTATTGCCGACGGCGG TGCAAGGAAACATGAAAACAGGGATTTTTAATAAAATCGCGGAGACTACA CGCGATTTGCCGGTGACAACAGGTGGAGCCTCCCCATTTGGAGAGCAAGT GGGTAGATTCTCCCTCGACGGGTTCATGGACACATTCGAAGAGTTGACAG ACAAACAATGGGGGACTCCGAGTACAACTCTTGATCTTGACTTGATGGGC CTCTTGCGCAATGTCTTTGTATCGGAAGAAGGTCATACTCGGCTGTTGCA AGAGGCGTGGGGAGATCCTGAAATCCTTCGTACCCTTATGGATGATTTGC CCCTATTCGATGTTATTAAACCTTTGCGAGCGCTCAAGGAGAAGAAAACA TTGACACCTAGCGATGTAAGTGAGATAGTGTAAAAGGAGTGAGTATACCA ATATAACGATCAGCAGGCACATGGAAATACTTGGCGCAATTTTCAAAGCA AATCTTCACGCATCACAGGGATTCGAGGCTGTAGTGGCTCTCAAAGATAC CATGGGCAAGCTCCTTACGTCATTGCAGAGTATCCGTGACCCAGAAAGTT TTGCTGAGAAGATTTATAAATATGCAACCAGCGAGGACCCAAAATGGAAA TCTTTGTTGGCACGAATCGAAGAAGGGGACACGACTTCTCATCTGGAGTC CCAGCAATTCCTTTTGAATGAGGAAATTGGTGACCGTAAGTAATGAATGT AGTGGGCATACATATACATCTATCCAATGGCCATGTCAGGATTTCATTGT GCCCTCTACCTCTCAGCCTTTATTCAATTGCAGTTTCCGATACAATGATT CTAAGTCACTACACCCACATATAATCTATACCAGTTATCGACCTAAAAGC TCTCGGTTTTGGTGGAGAATTACCCTCCCTAGTGACTAAAGCGATCGAGA CTACCAAACAAAACGAGCCATTGGTCTGGGGGAGTGTCTTATCTGACCCT ATTGCGAGGCGCTTCCTGGACAATCCTATCCTGGCCGTCCAAGAAGCGGT AGATGCTGCATCGGACTATGTGAAGAATGCGAAAGCGAGTGCCCAGTAGC GGCCTAATTTTATCTTATGAGAAAATATGTGTGAAATACATACCATATTT CTATATCTATCTATTTTGATGTGATGTCATTCGCATTGCAGCTAGGACCG ATATATCGCATTTTATCAATACCTATTACACACAGATCAAAGACAGCAAA ATTAGATGGATGATGGGCAGCAGAAAACTAGAGAAGATAAACGAGGGATG ATATGCAGGTTCATGTGACATATTTGCATACGGATGTGCAAGGGAAAAAG TGGGTGCGGATGTACATCTTTGGAGTCCTGCTGACAAAAAGTATTTGGTG TGATGTGTCAACAGAAGCAGACAAAGGAAAAGACGCAAACGTACTAAAAG ATAAACTCATATCTGAGGCAAGAATCTTGGCCCAAGATATCCAGGCCGAT CTTTCTCTGAATGTTCTTTGCCTTTTTCATATTTGTCAAAGTTCCTTATG TTTGAAAGCCTTGTAGGCTGTGTTAATAACTGTAGACCCGTAGTCCCTGA TCAAGGAATAGAACCAGGGTAATAGAAGTCAGATACCTGATTTTTTATTG TCTCTTTTTCCTGCATGGAGGCGGGCTGTGTATTACGTACCCCTTCAACT TCCTCCAACTGCTGCCCAGATGGACAAACACTGACCTTATTGATTTTCAT CTTATCAATTCGACACCCGTCCTCCGGATGTCAACTAACCCTATCCCTAA AACGGCCTGTCTCAGCATCAAATGTCATGATAATCGTTAGCGTTTGTTGG CTCTGACAGTCCAGATGCACGTCGTAGTACAGTAGACCTCTGCATGCATT ATGGTGTTATGTTCAGGTTGGACATCACATCATTACGACTCGTTCTCATT CTGCAAATTATGCCTCCCAATACACCACTCAATAATTGGTATTCTCACAC TGCAACAATGGTGCAGAGGAATTGGCCAGGGACACCACAAAAGATGTCCA AATTTCGATGTGTATTACACATATCACACGTCTTGGCAATATCCATCTCT TTGGCGCACTTCAACCGCTTAGCCACTAGCAGGACATTGCGTGAGGCAAT CCGGGAAGTACTGGGAACGCAGGGGGCCCAGTATGGCGCATTGAAGAGGT ATACTACGTCAGGGGAAGAGGGAAGGAGGAGGAAAGGAGAAAGAAAGGAG GAGGGGAGGAGAAGGAGACGGGGAGAGAAAGAGGAGAGGAAAAGGAGGAG TGGAACAGGTGAGGAGCAGAGAAGGGGGAGGGGAAGAGCAGGGAGAAAGG ATCGCGGAGGGAAGGGGAAAGGGAGGTTGATTGGGGAAGAGGAGGAGAGT GGAAGGAGGAGGAAGACAGGTGAGGAGAAGGGGAGGTGAGGAGGAGGAAG GAGGCGAAGGGGGAGAACGAGGGGGAGGAGATGAGAGGGGAAGGGGAGGA GGAGGGGAGGAGGAAGAGTAGCAGAGGATGCTCGGAGGAGAGGACGAGGG GAAAGGGATGACGGGGGGAGAGAGAGGTGAGGGGAAGGGAGGAGAAGGAG GGAAAGGGAGAAAAGAGGGGAGGGGATGAGGAGGTGAGGAGATGTTGGAG GGGAAGGAGGTGATAAGTAGAGAGGAGAAGGAAAAGGAAAGGAGGAGGGG AGAAGTAGAGAGGAGAAGGAAAAGGAAAGGAGGTGGGGAGAA back to topprotein sequence of jgi.p|Nanoce1779_2|614895 >mRNA_11741-protein ID=mRNA_11741-protein|Name=jgi.p|Nanoce1779_2|614895|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp MHYGVMFRLDITSLRLVLILQIMPPNTPLNNWYSHTATMVQRNWPGTPQK MSKFRCVLHISHVLAISISLAHFNRLATSRTLREAIREVLGTQGAQYGAL KRYTTSGEEGRRRKGERKEEGRRRRRGEKEERKRRSGTGEEQRRGRGRAG RKDRGGKGKGRLIGEEEESGRRRKTGEEKGR* back to topmRNA from alignment at scaffold_93:27296..31916+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11741 ID=mRNA_11741|Name=jgi.p|Nanoce1779_2|614895|organism=Nannochloropsis oceanica|type=mRNA|length=4621bp|location=Sequence derived from alignment at scaffold_93:27296..31916+ (Nannochloropsis oceanica) GGTGATTGAAGCTGTCTCCCGATAATCGATCAACGGCGAGTCACATTTAA
GCCCTGATCGCCAGAAAGTGCATTTTTAAAAACAAATACCGCGGATGGAC
GCCAATAAATACCTCTACATCGACCCATGCATATATTTGTGCAGTATAAT
GTGTAAGTAACGCACGCATACACTTCTCACAAAGTATCTAACGACACATG
ACTACACGAATGTAAGGGACGCCTCATACTTTGATGCTGGACAGTAATCA
ATATACATTCTGTATGCTAATTCTGTACTGTGTGCATGCCGTTAGTATCC
TCTCAAGTAGACCAAAGAGACGCAATTATGGTAGTGAATTACTTGGCGAG
TATATGTGTTGATGAGATTCTGGAAAAAAAGGTAAACCATCATGTCTACA
ATTTTCCAATTTGGAACCATACTTTCTGTTATCACAATAGTTCAAGGACA
GAGGAGCACTTTGCTTATAGAAAACTATTGTGACAAGCTTTATGATTGTT
CTCATGACTGAATTTTATATATATGTCTTATACGTTTATCGAGAAGATTC
ATGTAATAATAATTATCGAGAAGATTCATGTGACAATAATGTCTAAAGAT
TCATGTAATTTGAAAATACTAAATTATGGACATATTTAATTCCAAATCAT
ATGTGTGGTCGAATAAAGCATATTCTTACATCGTTGGTAAATTATGCACG
GGAAGAGGGGAATAATGATCGGGAAACGAAGCTAAAACCATAGATCTTTG
CCTGACAAATTTCTTAAATCAATAAAGTATCTTTATCCAATTACAAGATT
CAATAAGAACTCTCATATCAACGAGTGAGGATTCGATACTATAGGAAAGC
AAGCTTGATTATAACTATTGAACAACAATACACATGCCCCTGAAAGTATC
TCCTAGCGACATCAATTGCCAGGTCTATGAGTAGCGCTGATCCATGACGA
GTCTCTACCATGCAGAGATTCTTTATTTTTTACACTTTCTGTTGTTGGTC
ATGGGATAAGCGCTAATCTTGGATTTATCAAGTGGCATTGCTTAAAATTG
CTCATCAACACAGACAACATTATTTTTTTTCGGTCGTTCCCTGGCCCACT
AATACATTATTATATGTAGTGGAGAAGATTCATGTAAAAAATAGAGCATC
TATATAGAATATTCACCTGAATAAAGATTCAATTTGGGTCAAATATATCC
GAGCTAAATAAAACAATTGGCAGCACAGATCGCCAGGTCGAAGTGCTTCG
CCCGAGACGAGTAATATTCGGATTTTGGAAACAGGAATCAATTAAAATCA
CTGTATATAATCCTTTCTCCCAACAAAAGCTAGACTGTATATAAAGATGT
GAAATATAAATTTGTATACGGAGGAGAGCTATGCTGTCCATCTCAATTTA
TCTTACAATTGAGACAGTGAAGGTTTTGCACCGAACTCGTACACAGTAAG
CAGCGTTCTCCTTTTTCTCGATTCTCATCCAGTGCTTCTTTCTGTCAAAA
AATTGATTTGTGCGATTCTGCGGCTTACACAAATTCCTTTTTCCACCGAT
GCGTTGCATTTATGACCCAACTGCAGTACAAATCCTTGCATGTGGTGGCC
TTGCGGCTTCGCGATGCAATGGTATGCTTACAAATATTGACACAACTGAC
TTTGTGTCCCCCCCTTCTATGTATTTATCTCCCATCCTAGGCTCCGCTTT
GGTCATTTGTCCTGCATTCCTATCTCACACGGCTAGACCATGACGCGTCA
ATTCTCTACAGCTCTCATCCTTGTCGCTAGCGTGGTATTGCCGACGGCGG
TGCAAGGAAACATGAAAACAGGGATTTTTAATAAAATCGCGGAGACTACA
CGCGATTTGCCGGTGACAACAGGTGGAGCCTCCCCATTTGGAGAGCAAGT
GGGTAGATTCTCCCTCGACGGGTTCATGGACACATTCGAAGAGTTGACAG
ACAAACAATGGGGGACTCCGAGTACAACTCTTGATCTTGACTTGATGGGC
CTCTTGCGCAATGTCTTTGTATCGGAAGAAGGTCATACTCGGCTGTTGCA
AGAGGCGTGGGGAGATCCTGAAATCCTTCGTACCCTTATGGATGATTTGC
CCCTATTCGATGTTATTAAACCTTTGCGAGCGCTCAAGGAGAAGAAAACA
TTGACACCTAGCGATGTAAGTGAGATAGTGTAAAAGGAGTGAGTATACCA
ATATAACGATCAGCAGGCACATGGAAATACTTGGCGCAATTTTCAAAGCA
AATCTTCACGCATCACAGGGATTCGAGGCTGTAGTGGCTCTCAAAGATAC
CATGGGCAAGCTCCTTACGTCATTGCAGAGTATCCGTGACCCAGAAAGTT
TTGCTGAGAAGATTTATAAATATGCAACCAGCGAGGACCCAAAATGGAAA
TCTTTGTTGGCACGAATCGAAGAAGGGGACACGACTTCTCATCTGGAGTC
CCAGCAATTCCTTTTGAATGAGGAAATTGGTGACCGTAAGTAATGAATGT
AGTGGGCATACATATACATCTATCCAATGGCCATGTCAGGATTTCATTGT
GCCCTCTACCTCTCAGCCTTTATTCAATTGCAGTTTCCGATACAATGATT
CTAAGTCACTACACCCACATATAATCTATACCAGTTATCGACCTAAAAGC
TCTCGGTTTTGGTGGAGAATTACCCTCCCTAGTGACTAAAGCGATCGAGA
CTACCAAACAAAACGAGCCATTGGTCTGGGGGAGTGTCTTATCTGACCCT
ATTGCGAGGCGCTTCCTGGACAATCCTATCCTGGCCGTCCAAGAAGCGGT
AGATGCTGCATCGGACTATGTGAAGAATGCGAAAGCGAGTGCCCAGTAGC
GGCCTAATTTTATCTTATGAGAAAATATGTGTGAAATACATACCATATTT
CTATATCTATCTATTTTGATGTGATGTCATTCGCATTGCAGCTAGGACCG
ATATATCGCATTTTATCAATACCTATTACACACAGATCAAAGACAGCAAA
ATTAGATGGATGATGGGCAGCAGAAAACTAGAGAAGATAAACGAGGGATG
ATATGCAGGTTCATGTGACATATTTGCATACGGATGTGCAAGGGAAAAAG
TGGGTGCGGATGTACATCTTTGGAGTCCTGCTGACAAAAAGTATTTGGTG
TGATGTGTCAACAGAAGCAGACAAAGGAAAAGACGCAAACGTACTAAAAG
ATAAACTCATATCTGAGGCAAGAATCTTGGCCCAAGATATCCAGGCCGAT
CTTTCTCTGAATGTTCTTTGCCTTTTTCATATTTGTCAAAGTTCCTTATG
TTTGAAAGCCTTGTAGGCTGTGTTAATAACTGTAGACCCGTAGTCCCTGA
TCAAGGAATAGAACCAGGGTAATAGAAGTCAGATACCTGATTTTTTATTG
TCTCTTTTTCCTGCATGGAGGCGGGCTGTGTATTACGTACCCCTTCAACT
TCCTCCAACTGCTGCCCAGATGGACAAACACTGACCTTATTGATTTTCAT
CTTATCAATTCGACACCCGTCCTCCGGATGTCAACTAACCCTATCCCTAA
AACGGCCTGTCTCAGCATCAAATGTCATGATAATCGTTAGCGTTTGTTGG
CTCTGACAGTCCAGATGCACGTCGTAGTACAGTAGACCTCTGCATGCATT
ATGGTGTTATGTTCAGGTTGGACATCACATCATTACGACTCGTTCTCATT
CTGCAAATTATGCCTCCCAATACACCACTCAATAATTGGTATTCTCACAC
TGCAACAATGGTGCAGAGGAATTGGCCAGGGACACCACAAAAGATGTCCA
AATTTCGATGTGTATTACACATATCACACGTACGGGTGGAGGGAACTGGG
AAAAATAAAACAGGGGTCGAAAGCATATCGTACGGCAATTTACTCAAGAA
GTGATCAAACAATGTTTATCAAACATAATTTATCCTTCCCACTTACGTAA
TGGCACAGGTCTTGGCAATATCCATCTCTTTGGCGCACTTCAACCGCTTA
GCCACTAGCAGGACATTGCGTGAGGCAATCCGGGAAGTACTGGGAACGCA
GGGGGCCCAGTATGGCGCATTGAAGAGGTATACTACGTCAGGGGAAGAGG
GAAGGAGGAGGAAAGGAGAAAGAAAGGAGGAGGGGAGGAGAAGGAGACGG
GGAGAGAAAGAGGAGAGGAAAAGGAGGAGTGGAACAGGTGAGGAGCAGAG
AAGGGGGAGGGGAAGAGCAGGGAGAAAGGATCGCGGAGGGAAGGGGAAAG
GGAGGTTGATTGGGGAAGAGGAGGAGAGTGGAAGGAGGAGGAAGACAGGT
GAGGAGAAGGGGAGGTGAGGAGGAGGAAGGAGGCGAAGGGGGAGAACGAG
GGGGAGGAGATGAGAGGGGAAGGGGAGGAGGAGGGGAGGAGGAAGAGTAG
CAGAGGATGCTCGGAGGAGAGGACGAGGGGAAAGGGATGACGGGGGGAGA
GAGAGGTGAGGGGAAGGGAGGAGAAGGAGGGAAAGGGAGAAAAGAGGGGA
GGGGATGAGGAGGTGAGGAGATGTTGGAGGGGAAGGAGGTGATAAGTAGA
GAGGAGAAGGAAAAGGAAAGGAGGAGGGGAGAAGTAGAGAGGAGAAGGAA
AAGGAAAGGAGGTGGGGAGAA back to topCoding sequence (CDS) from alignment at scaffold_93:27296..31916+ >mRNA_11741 ID=mRNA_11741|Name=jgi.p|Nanoce1779_2|614895|organism=Nannochloropsis oceanica|type=CDS|length=1092bp|location=Sequence derived from alignment at scaffold_93:27296..31916+ (Nannochloropsis oceanica) ATGCATTATGGTGTTATGTTCAGGTTGGACATCACATCATTACGACTCGT TCTCATTCTGCAAATTATGCCTCCCAATACACCACTCAATAATTGGTATT CTCACACTGCAACAATGGTGCAGAGGAATTGGCCAGGGACACCACAAAAG ATGTCCAAATTTCGATGTGTATTACACATATCACACGTCTTGGCAATATC CATCTCTTTGGCGCACTTCAACCGCTTAGCCACTAGCAGGACATTGCGTG AGGCAATCCGGGAAGTACTGGGAACGCAGGGGGCCCAGTATGGCGCATTG AAGAGGTATACTACGTCAGGGGAAGAGGGAAGGAGGAGGAAAGGAGAAAG AAAGGAGGAGGGGAGGAGAAGGAGACGGGGAGAGAAAGAGGAGAGGAAAA GGAGGAGTGGAACAGGTGAGGAGCAGAGAAGGGGGAGGGGAAGAGCAGGG AGAAAGGATCGCGGAGGGAAGGGGAAAGGGAGGTTGATTGGGGAAGAGGA GGAGAGTGGAAGGAGGAGGAAGACAGGTGAGGAGAAGGGGAGGTGAATGC ATTATGGTGTTATGTTCAGGTTGGACATCACATCATTACGACTCGTTCTC ATTCTGCAAATTATGCCTCCCAATACACCACTCAATAATTGGTATTCTCA CACTGCAACAATGGTGCAGAGGAATTGGCCAGGGACACCACAAAAGATGT CCAAATTTCGATGTGTATTACACATATCACACGTCTTGGCAATATCCATC TCTTTGGCGCACTTCAACCGCTTAGCCACTAGCAGGACATTGCGTGAGGC AATCCGGGAAGTACTGGGAACGCAGGGGGCCCAGTATGGCGCATTGAAGA GGTATACTACGTCAGGGGAAGAGGGAAGGAGGAGGAAAGGAGAAAGAAAG GAGGAGGGGAGGAGAAGGAGACGGGGAGAGAAAGAGGAGAGGAAAAGGAG GAGTGGAACAGGTGAGGAGCAGAGAAGGGGGAGGGGAAGAGCAGGGAGAA AGGATCGCGGAGGGAAGGGGAAAGGGAGGTTGATTGGGGAAGAGGAGGAG AGTGGAAGGAGGAGGAAGACAGGTGAGGAGAAGGGGAGGTGA back to top
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