jgi.p|Nanoce1779_2|614862, mRNA_11735 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|614862
Unique NamemRNA_11735
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1264
Alignment locationscaffold_93:8359..10393 -

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Properties
Property NameValue
TranscriptId614948
TrackFilteredModels2
ProteinId614862
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:8359..10393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614862gene_11735Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614862mRNA_11735-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11735CDS_11735Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11735 ID=mRNA_11735|Name=jgi.p|Nanoce1779_2|614862|organism=Nannochloropsis oceanica|type=mRNA|length=1264bp
CAGCACACAAAATACAGCACCAGCTGATAAGCCATGGACGCTAAATCCTT
TTCCACACCTGTTGCCAGCTTCACCGCCGCTGCCAAACCTTCCCCTTTAT
CCTCATCTCCCTCCCTCCCCTCCCCTCACCTTCTCCCTCCTCTCCCACGG
CGCAGCCGCAGAAGCCACTCTACAAGCCTTTTTTCTTCTGAGGAGCACAC
TCGCTTTTTGACCGCATTAGATAGCCTCCTTGCATCTTCATCTTCTCTCC
TCTCCACGAGTCCTCTTACTGAGAACGAAAAGCAGCAAGCATGGACAGGA
CTTGAGTGGTCCGATCTGGCGGCTAGAGTAGGAAACGAGCGAAGCGTGAT
GGAGGTGCCACAGCAATGCACTAAGAAGAAGGAAGAGGAAGCTGGAGAGG
ACGAGGAAGTGGGGATGGAGGCGGGGACCTCGATGGAGGAGCAGGAGCGA
GACGAGAAGAAAGTGGAAGAGGGAGAAGAGGGGAAAACAATGCACGTTCA
ACAGGTGGAGGAAGTACAAATGCAGAAAGAGGAAAAGAGAGAGAAAAGAA
CCGAGGCGCACGAGGAGGGGCAGGAGAAGAAGGAGAACGAGAAGGAGGAG
AAGGAGGGAGAGACGGGCGAGGGGATGTTGCATGAAAAGAAAGAGGAGGA
GGAGGACGCGCCAGCAGCAAGGGACGTGGAGATGGTGGTGGCGATGACGG
TGGAGGCAGAGGAGCCTGACGAGATGATGAGAGAGAAGAAGGAGAAAAAA
GCAGGAGCAGAAGATGGCGGAGAAAGAGAAGGAGGATGATGTGGCGAAGG
AGGAGACGGTAGGGGGGAAGCGGAAGGCGGGGCGACAAGATGGAAGGATG
TGATGCGACTGCTGGTGCTTCGACGGCTGTCCTCTCTGCAAAACGCGCCC
ACAGTCGCAGTAATGACACGATCGTTTAGAAACACGCGGAAAGCTCCCTG
CCATACCAGGAGGAGAAGGAGAACGGAGGCGAGGAAGTGCACCAGTGAGG
GAGGCAGGGAGGCAGTTCAAGCGGAGGGTTGAAGATAGAGGTTCTGATGG
TAGCTCGGGCGCAGCAGGGAGCGCGAGGAGAAGAAGGTGGCAAGCAGAGG
CGGAGGAGGAGGAGGGAGGCGAATGGCGACGTGCATGTGCGTGTGCATGA
ATGAAGAAGAAGAGATAGCGCAGAGAAGGTGAGGAATAGGAGCAGGAGGA
AGGGGAGACCTGAGGAGAAAGACAATGGAAAAAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAA
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protein sequence of jgi.p|Nanoce1779_2|614862

>mRNA_11735-protein ID=mRNA_11735-protein|Name=jgi.p|Nanoce1779_2|614862|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MDAKSFSTPVASFTAAAKPSPLSSSPSLPSPHLLPPLPRRSRRSHSTSLF
SSEEHTRFLTALDSLLASSSSLLSTSPLTENEKQQAWTGLEWSDLAARVG
NERSVMEVPQQCTKKKEEEAGEDEEVGMEAGTSMEEQERDEKKVEEGEEG
KTMHVQQVEEVQMQKEEKREKRTEAHEEGQEKKENEKEEKEGETGEGMLH
EKKEEEEDAPAARDVEMVVAMTVEAEEPDEMMREKKEKKAGAEDGGEREG
G*
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mRNA from alignment at scaffold_93:8359..10393-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11735 ID=mRNA_11735|Name=jgi.p|Nanoce1779_2|614862|organism=Nannochloropsis oceanica|type=mRNA|length=2035bp|location=Sequence derived from alignment at scaffold_93:8359..10393- (Nannochloropsis oceanica)
CAGCACACAAAATACAGCACCAGCTGATAAGCCATGGACGCTAAATCCTT
TTCCACACCTGTTGCCAGCTTCACCGCCGCTGCCAAACCTTCCCCTTTAT
CCTCATCTCCCTCCCTCCCCTCCCCTCACCTTCTCCCTCCTCTCCCACGG
CGCAGCCGCAGAAGCCACTCTACAAGGTTCGTGTATGCGTGTGATCGTCG
GACGATAATATGTGGGGAACAATTTTAGAGGATGAGGTAAAATTGAAGTA
AAAGAGAGGCAGGACAAAGGGGAAATGAAGCCCCGGTCTCCGCTCATCGT
CCTTCTCACTAGCCTTTCTTTGTTCTAATCAACAGCCTTTTTTCTTCTGA
GGAGCACACTCGCTTTTTGACCGCATTAGATAGCCTCCTTGCATCTTCAT
CTTCTCTCCTCTCCACGAGTCCTCTTACTGAGAACGAAAAGCAGCAAGCA
TGGACAGGACTTGAGTGGTCCGATCTGGCGGCTAGAGTAGGAAACGAGCG
AAGCGTGATGGAGGTAAGAAGATTGCCTCCATGAAGCCAAAAGAGGACAA
ACTGACTGGACGTCAGAAAAAAGAAAAGATGGGTTTCAGGAGCATCACCT
AGCTCACCCCTGAGTCATCCTTCTCTACCCCTCCATCTCGCCCGCCTCCC
CTGCAGGTGAAGCTACACGCCCACGAGTGTTTCCTCCGCCTGCAAGCAAA
AATGGGCGCATCCCCCGAGTCCTCCCCTTCCCACCTCTCCCCCCGCCCTC
TCGGCTGGACAAAAGGTGCCACAGCAATGCACTAAGAAGAAGGAAGAGGA
AGCTGGAGAGGACGAGGAAGTGGGGATGGAGGCGGGGACCTCGATGGAGG
AGCAGGAGCGAGACGAGAAGAAAGTGGAAGAGGGAGAAGAGGGGAAAACA
ATGCACGTTCAACAGGTGGAGGAAGTACAAATGCAGAAAGAGGAAAAGAG
AGAGAAAAGAACCGAGGCGCACGAGGAGGGGCAGGAGAAGAAGGAGAACG
AGAAGGAGGAGAAGGAGGGAGAGACGGGCGAGGGGATGTTGCATGAAAAG
AAAGAGGAGGAGGAGGACGCGCCAGCAGCAAGGGACGTGGAGATGGTGGT
GGCGATGACGGTGGAGGCAGAGGAGCCTGACGAGATGATGAGAGAGAAGA
AGGAGAAAAAAGCAGGAGCAGAAGATGGCGGAGAAAGAGAAGGAGGATGA
TGTGGCGAAGGAGGAGACGGTAGGGGGGAAGCGGAAGGCGGGGCGACAAG
ATGGAAGGATGTGATGCGACTGCTGGTGCTTCGACGGCTGTCCTCTCTGC
AAAACGCGCCCACAGTCGCAGTAATGACACGATCGTTTAGAAACACGCGG
AAAGCTCCCTGCCATACCAGGAGGAGAAGGAGAACGGAGGCGAGGAAGTG
CACCAGTGAGGGAGGCAGGGAGGCAGTTCAAGCGGAGGGTTGAAGATAGA
GGTTCTGATGGTAGCTCGGGCGCAGCAGGGAGCGCGAGGAGAAGAAGGTG
GCAAGCAGAGGCGGAGGAGGAGGAGGGAGGCGAATGGCGACGTGCATGTG
CGTGTGCATGAATGAAGAAGAAGAGATAGCGCAGAGAAGGTGAGGAATAG
GAGCAGGAGGAAGGGGAGACCTGAGGAGAAAGACAATGGAAAAGAGAAGA
AGAAGAAGAAGAAGAAGACAGAGATGACCACGAAAGAGGAAAGAAGAAGG
AGAAAGAGAGGAAGAAGAAGGAGGAAGAAGAGGAGGAGAAGAGAAGAGAA
GAAGAAGTAGAAGAGTAGTAGAAGAATCAGAAGAAGAAGGAAGAAGATGA
CCACAAAAGGAAGAAAAGAAGAAGAGAACGAGAGGAAGAAGGAGGAGGAG
AAGAAGAGAAGAAGAAAGGTAGAAGAAGGAGGAGGAGAAGAAGAAGAAGA
AGAAGATGACCACGGCAAGAAGAAAGAAGAGAGGAAGAAGAAGGAGGAAG
AAGGAGGAAGAAGGAGGAGGAGAAAGAAGAAGAAGATGAAGAAGAAGTAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
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Coding sequence (CDS) from alignment at scaffold_93:8359..10393-

>mRNA_11735 ID=mRNA_11735|Name=jgi.p|Nanoce1779_2|614862|organism=Nannochloropsis oceanica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_93:8359..10393- (Nannochloropsis oceanica)
GTGCCACAGCAATGCACTAAGAAGAAGGAAGAGGAAGCTGGAGAGGACGA
GGAAGTGGGGATGGAGGCGGGGACCTCGATGGAGGAGCAGGAGCGAGACG
AGAAGAAAGTGGAAGAGGGAGAAGAGGGGAAAACAATGCACGTTCAACAG
GTGGAGGAAGTACAAATGCAGAAAGAGGAAAAGAGAGAGAAAAGAACCGA
GGCGCACGAGGAGGGGCAGGAGAAGAAGGAGAACGAGAAGGAGGAGAAGG
AGGGAGAGACGGGCGAGGGGATGTTGCATGAAAAGAAAGAGGAGGAGGAG
GACGCGCCAGCAGCAAGGGACGTGGAGATGGTGGTGGCGATGACGGTGGA
GGCAGAGGAGCCTGACGAGATGATGAGAGAGAAGAAGGAGAAAAAAGCAG
GAGCAGAAGATGGCGGAGAAAGAGAAGGAGGATGACCTTTTTTCTTCTGA
GGAGCACACTCGCTTTTTGACCGCATTAGATAGCCTCCTTGCATCTTCAT
CTTCTCTCCTCTCCACGAGTCCTCTTACTGAGAACGAAAAGCAGCAAGCA
TGGACAGGACTTGAGTGGTCCGATCTGGCGGCTAGAGTAGGAAACGAGCG
AAGCGTGATGGAGATGGACGCTAAATCCTTTTCCACACCTGTTGCCAGCT
TCACCGCCGCTGCCAAACCTTCCCCTTTATCCTCATCTCCCTCCCTCCCC
TCCCCTCACCTTCTCCCTCCTCTCCCACGGCGCAGCCGCAGAAGCCACTC
TACAAGGTGCCACAGCAATGCACTAAGAAGAAGGAAGAGGAAGCTGGAGA
GGACGAGGAAGTGGGGATGGAGGCGGGGACCTCGATGGAGGAGCAGGAGC
GAGACGAGAAGAAAGTGGAAGAGGGAGAAGAGGGGAAAACAATGCACGTT
CAACAGGTGGAGGAAGTACAAATGCAGAAAGAGGAAAAGAGAGAGAAAAG
AACCGAGGCGCACGAGGAGGGGCAGGAGAAGAAGGAGAACGAGAAGGAGG
AGAAGGAGGGAGAGACGGGCGAGGGGATGTTGCATGAAAAGAAAGAGGAG
GAGGAGGACGCGCCAGCAGCAAGGGACGTGGAGATGGTGGTGGCGATGAC
GGTGGAGGCAGAGGAGCCTGACGAGATGATGAGAGAGAAGAAGGAGAAAA
AAGCAGGAGCAGAAGATGGCGGAGAAAGAGAAGGAGGATGACCTTTTTTC
TTCTGAGGAGCACACTCGCTTTTTGACCGCATTAGATAGCCTCCTTGCAT
CTTCATCTTCTCTCCTCTCCACGAGTCCTCTTACTGAGAACGAAAAGCAG
CAAGCATGGACAGGACTTGAGTGGTCCGATCTGGCGGCTAGAGTAGGAAA
CGAGCGAAGCGTGATGGAGATGGACGCTAAATCCTTTTCCACACCTGTTG
CCAGCTTCACCGCCGCTGCCAAACCTTCCCCTTTATCCTCATCTCCCTCC
CTCCCCTCCCCTCACCTTCTCCCTCCTCTCCCACGGCGCAGCCGCAGAAG
CCACTCTACAAGGTGCCACAGCAATGCACTAAGAAGAAGGAAGAGGAAGC
TGGAGAGGACGAGGAAGTGGGGATGGAGGCGGGGACCTCGATGGAGGAGC
AGGAGCGAGACGAGAAGAAAGTGGAAGAGGGAGAAGAGGGGAAAACAATG
CACGTTCAACAGGTGGAGGAAGTACAAATGCAGAAAGAGGAAAAGAGAGA
GAAAAGAACCGAGGCGCACGAGGAGGGGCAGGAGAAGAAGGAGAACGAGA
AGGAGGAGAAGGAGGGAGAGACGGGCGAGGGGATGTTGCATGAAAAGAAA
GAGGAGGAGGAGGACGCGCCAGCAGCAAGGGACGTGGAGATGGTGGTGGC
GATGACGGTGGAGGCAGAGGAGCCTGACGAGATGATGAGAGAGAAGAAGG
AGAAAAAAGCAGGAGCAGAAGATGGCGGAGAAAGAGAAGGAGGATGACCT
TTTTTCTTCTGAGGAGCACACTCGCTTTTTGACCGCATTAGATAGCCTCC
TTGCATCTTCATCTTCTCTCCTCTCCACGAGTCCTCTTACTGAGAACGAA
AAGCAGCAAGCATGGACAGGACTTGAGTGGTCCGATCTGGCGGCTAGAGT
AGGAAACGAGCGAAGCGTGATGGAGATGGACGCTAAATCCTTTTCCACAC
CTGTTGCCAGCTTCACCGCCGCTGCCAAACCTTCCCCTTTATCCTCATCT
CCCTCCCTCCCCTCCCCTCACCTTCTCCCTCCTCTCCCACGGCGCAGCCG
CAGAAGCCACTCTACAAG
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Synonyms
Publications