scaffold_53, scaffold_53 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_53
Unique Name	scaffold_53
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	110619
Alignment location	jgi.p\|Nanoce1779_2\|347320:79902..82841 -
Alignment location	jgi.p\|Nanoce1779_2\|347320:79902..82841 -
Alignment location	CDS_10560:82188..82393 -
Alignment location	CDS_10560:81976..82062 -
Alignment location	CDS_10560:81636..81816 -
Alignment location	CDS_10560:81381..81488 -
Alignment location	CDS_10560:81056..81181 -
Alignment location	CDS_10560:80819..80887 -
Alignment location	CDS_10560:80535..80705 -
Alignment location	CDS_10560:80207..80329 -
Alignment location	CDS_10560:80014..80112 -
Alignment location	jgi.p\|Nanoce1779_2\|610960:77889..79696 +
Alignment location	jgi.p\|Nanoce1779_2\|610960:77889..79696 +
Alignment location	CDS_10559:77907..78102 +
Alignment location	CDS_10559:78216..78331 +
Alignment location	CDS_10559:78498..78608 +
Alignment location	CDS_10559:78727..78798 +
Alignment location	CDS_10559:78881..78943 +
Alignment location	CDS_10559:79081..79162 +
Alignment location	CDS_10559:79283..79413 +
Alignment location	jgi.p\|Nanoce1779_2\|610973:80684..85177 -
Alignment location	jgi.p\|Nanoce1779_2\|610973:80684..85177 -
Alignment location	CDS_10561:85027..85173 -
Alignment location	CDS_10561:84804..84909 -
Alignment location	CDS_10561:84568..84657 -
Alignment location	CDS_10561:84306..84451 -
Alignment location	CDS_10561:84080..84178 -
Alignment location	CDS_10561:83847..83958 -
Alignment location	CDS_10561:83528..83700 -
Alignment location	CDS_10561:83223..83370 -
Alignment location	CDS_10561:82405..83099 -
Alignment location	jgi.p\|Nanoce1779_2\|610981:85153..86715 -
Alignment location	jgi.p\|Nanoce1779_2\|610981:85153..86715 -
Alignment location	CDS_10562:86562..86690 -
Alignment location	CDS_10562:86345..86455 -
Alignment location	CDS_10562:86224..86268 -
Alignment location	CDS_10562:85886..86131 -
Alignment location	CDS_10562:85340..85795 -
Alignment location	jgi.p\|Nanoce1779_2\|610988:87413..89173 +
Alignment location	jgi.p\|Nanoce1779_2\|610988:87413..89173 +
Alignment location	CDS_10563:87413..87608 +
Alignment location	CDS_10563:87722..87837 +
Alignment location	CDS_10563:88004..88114 +
Alignment location	CDS_10563:88233..88304 +
Alignment location	CDS_10563:88387..88449 +
Alignment location	CDS_10563:88587..88668 +
Alignment location	CDS_10563:88789..88919 +
Alignment location	jgi.p\|Nanoce1779_2\|611002:89733..91618 +
Alignment location	jgi.p\|Nanoce1779_2\|611002:89733..91618 +
Alignment location	CDS_10564:89777..90136 +
Alignment location	CDS_10564:90231..90539 +
Alignment location	CDS_10564:90781..90912 +
Alignment location	jgi.p\|Nanoce1779_2\|611004:91619..93153 -
Alignment location	jgi.p\|Nanoce1779_2\|611004:91619..93153 -
Alignment location	CDS_10565:91672..93129 -
Alignment location	jgi.p\|Nanoce1779_2\|611011:93575..94772 +
Alignment location	jgi.p\|Nanoce1779_2\|611011:93575..94772 +
Alignment location	CDS_10566:93585..93635 +
Alignment location	CDS_10566:93755..93904 +
Alignment location	CDS_10566:94048..94178 +
Alignment location	CDS_10566:94276..94516 +
Alignment location	jgi.p\|Nanoce1779_2\|611018:94717..97067 +
Alignment location	jgi.p\|Nanoce1779_2\|611018:94717..97067 +
Alignment location	CDS_10567:95475..95513 +
Alignment location	CDS_10567:95700..95864 +
Alignment location	CDS_10567:96079..96405 +
Alignment location	CDS_10567:96761..96832 +
Alignment location	jgi.p\|Nanoce1779_2\|611034:99674..105679 +
Alignment location	jgi.p\|Nanoce1779_2\|611034:99674..105679 +
Alignment location	CDS_10569:99711..99992 +
Alignment location	CDS_10569:100152..100329 +
Alignment location	CDS_10569:100609..100670 +
Alignment location	CDS_10569:100832..100970 +
Alignment location	CDS_10569:101158..101250 +
Alignment location	CDS_10569:101397..101519 +
Alignment location	CDS_10569:101773..101854 +
Alignment location	CDS_10569:102278..102348 +
Alignment location	CDS_10569:102667..102855 +
Alignment location	CDS_10569:103030..103133 +
Alignment location	CDS_10569:103469..103561 +
Alignment location	CDS_10569:103939..104163 +
Alignment location	jgi.p\|Nanoce1779_2\|611052:105774..107526 -
Alignment location	jgi.p\|Nanoce1779_2\|611052:105774..107526 -
Alignment location	CDS_10570:107251..107445 -
Alignment location	CDS_10570:106233..107156 -
Alignment location	jgi.p\|Nanoce1779_2\|611054:107715..109230 +
Alignment location	jgi.p\|Nanoce1779_2\|611054:107715..109230 +
Alignment location	CDS_10571:108092..108925 +
Alignment location	jgi.p\|Nanoce1779_2\|611055:109104..110237 +
Alignment location	jgi.p\|Nanoce1779_2\|611055:109104..110237 +
Alignment location	CDS_10572:109134..109724 +
Alignment location	jgi.p\|Nanoce1779_2\|634049:97616..99339 -
Alignment location	jgi.p\|Nanoce1779_2\|634049:97616..99339 -
Alignment location	CDS_10568:98684..98845 -
Alignment location	CDS_10568:97662..98306 -
Alignment location	jgi.p\|Nanoce1779_2\|347320:80014..82393 -
Alignment location	jgi.p\|Nanoce1779_2\|610960:77907..79413 +
Alignment location	jgi.p\|Nanoce1779_2\|610973:82405..85173 -
Alignment location	jgi.p\|Nanoce1779_2\|610981:85340..86690 -
Alignment location	jgi.p\|Nanoce1779_2\|610988:87413..88919 +
Alignment location	jgi.p\|Nanoce1779_2\|611002:89777..90912 +
Alignment location	jgi.p\|Nanoce1779_2\|611004:91672..93129 -
Alignment location	jgi.p\|Nanoce1779_2\|611011:93585..94516 +
Alignment location	jgi.p\|Nanoce1779_2\|611018:95475..96832 +
Alignment location	jgi.p\|Nanoce1779_2\|611034:99711..104163 +
Alignment location	jgi.p\|Nanoce1779_2\|611052:106233..107445 -
Alignment location	jgi.p\|Nanoce1779_2\|611054:108092..108925 +
Alignment location	jgi.p\|Nanoce1779_2\|611055:109134..109724 +
Alignment location	jgi.p\|Nanoce1779_2\|634049:97662..98845 -
Alignment location	ncniL075:79903..110237 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|347320	gene	jgi.p\|Nanoce1779_2\|347320:79902..82841 -
jgi.p\|Nanoce1779_2\|347320	mRNA	jgi.p\|Nanoce1779_2\|347320:79902..82841 -
CDS_10560	CDS	CDS_10560:82188..82393 -
CDS_10560	CDS	CDS_10560:81976..82062 -
CDS_10560	CDS	CDS_10560:81636..81816 -
CDS_10560	CDS	CDS_10560:81381..81488 -
CDS_10560	CDS	CDS_10560:81056..81181 -
CDS_10560	CDS	CDS_10560:80819..80887 -
CDS_10560	CDS	CDS_10560:80535..80705 -
CDS_10560	CDS	CDS_10560:80207..80329 -
CDS_10560	CDS	CDS_10560:80014..80112 -
jgi.p\|Nanoce1779_2\|610960	gene	jgi.p\|Nanoce1779_2\|610960:77889..79696 +
jgi.p\|Nanoce1779_2\|610960	mRNA	jgi.p\|Nanoce1779_2\|610960:77889..79696 +
CDS_10559	CDS	CDS_10559:77907..78102 +
CDS_10559	CDS	CDS_10559:78216..78331 +
CDS_10559	CDS	CDS_10559:78498..78608 +
CDS_10559	CDS	CDS_10559:78727..78798 +
CDS_10559	CDS	CDS_10559:78881..78943 +
CDS_10559	CDS	CDS_10559:79081..79162 +
CDS_10559	CDS	CDS_10559:79283..79413 +
jgi.p\|Nanoce1779_2\|610973	gene	jgi.p\|Nanoce1779_2\|610973:80684..85177 -
jgi.p\|Nanoce1779_2\|610973	mRNA	jgi.p\|Nanoce1779_2\|610973:80684..85177 -
CDS_10561	CDS	CDS_10561:85027..85173 -
CDS_10561	CDS	CDS_10561:84804..84909 -
CDS_10561	CDS	CDS_10561:84568..84657 -
CDS_10561	CDS	CDS_10561:84306..84451 -
CDS_10561	CDS	CDS_10561:84080..84178 -
CDS_10561	CDS	CDS_10561:83847..83958 -
CDS_10561	CDS	CDS_10561:83528..83700 -
CDS_10561	CDS	CDS_10561:83223..83370 -
CDS_10561	CDS	CDS_10561:82405..83099 -
jgi.p\|Nanoce1779_2\|610981	gene	jgi.p\|Nanoce1779_2\|610981:85153..86715 -
jgi.p\|Nanoce1779_2\|610981	mRNA	jgi.p\|Nanoce1779_2\|610981:85153..86715 -
CDS_10562	CDS	CDS_10562:86562..86690 -
CDS_10562	CDS	CDS_10562:86345..86455 -
CDS_10562	CDS	CDS_10562:86224..86268 -
CDS_10562	CDS	CDS_10562:85886..86131 -
CDS_10562	CDS	CDS_10562:85340..85795 -
jgi.p\|Nanoce1779_2\|610988	gene	jgi.p\|Nanoce1779_2\|610988:87413..89173 +
jgi.p\|Nanoce1779_2\|610988	mRNA	jgi.p\|Nanoce1779_2\|610988:87413..89173 +
CDS_10563	CDS	CDS_10563:87413..87608 +
CDS_10563	CDS	CDS_10563:87722..87837 +
CDS_10563	CDS	CDS_10563:88004..88114 +
CDS_10563	CDS	CDS_10563:88233..88304 +
CDS_10563	CDS	CDS_10563:88387..88449 +
CDS_10563	CDS	CDS_10563:88587..88668 +
CDS_10563	CDS	CDS_10563:88789..88919 +
jgi.p\|Nanoce1779_2\|611002	gene	jgi.p\|Nanoce1779_2\|611002:89733..91618 +
jgi.p\|Nanoce1779_2\|611002	mRNA	jgi.p\|Nanoce1779_2\|611002:89733..91618 +
CDS_10564	CDS	CDS_10564:89777..90136 +
CDS_10564	CDS	CDS_10564:90231..90539 +
CDS_10564	CDS	CDS_10564:90781..90912 +
jgi.p\|Nanoce1779_2\|611004	gene	jgi.p\|Nanoce1779_2\|611004:91619..93153 -
jgi.p\|Nanoce1779_2\|611004	mRNA	jgi.p\|Nanoce1779_2\|611004:91619..93153 -
CDS_10565	CDS	CDS_10565:91672..93129 -
jgi.p\|Nanoce1779_2\|611011	gene	jgi.p\|Nanoce1779_2\|611011:93575..94772 +
jgi.p\|Nanoce1779_2\|611011	mRNA	jgi.p\|Nanoce1779_2\|611011:93575..94772 +
CDS_10566	CDS	CDS_10566:93585..93635 +
CDS_10566	CDS	CDS_10566:93755..93904 +
CDS_10566	CDS	CDS_10566:94048..94178 +
CDS_10566	CDS	CDS_10566:94276..94516 +
jgi.p\|Nanoce1779_2\|611018	gene	jgi.p\|Nanoce1779_2\|611018:94717..97067 +
jgi.p\|Nanoce1779_2\|611018	mRNA	jgi.p\|Nanoce1779_2\|611018:94717..97067 +
CDS_10567	CDS	CDS_10567:95475..95513 +
CDS_10567	CDS	CDS_10567:95700..95864 +
CDS_10567	CDS	CDS_10567:96079..96405 +
CDS_10567	CDS	CDS_10567:96761..96832 +
jgi.p\|Nanoce1779_2\|611034	gene	jgi.p\|Nanoce1779_2\|611034:99674..105679 +
jgi.p\|Nanoce1779_2\|611034	mRNA	jgi.p\|Nanoce1779_2\|611034:99674..105679 +
CDS_10569	CDS	CDS_10569:99711..99992 +
CDS_10569	CDS	CDS_10569:100152..100329 +
CDS_10569	CDS	CDS_10569:100609..100670 +
CDS_10569	CDS	CDS_10569:100832..100970 +
CDS_10569	CDS	CDS_10569:101158..101250 +
CDS_10569	CDS	CDS_10569:101397..101519 +
CDS_10569	CDS	CDS_10569:101773..101854 +
CDS_10569	CDS	CDS_10569:102278..102348 +
CDS_10569	CDS	CDS_10569:102667..102855 +
CDS_10569	CDS	CDS_10569:103030..103133 +
CDS_10569	CDS	CDS_10569:103469..103561 +
CDS_10569	CDS	CDS_10569:103939..104163 +
jgi.p\|Nanoce1779_2\|611052	gene	jgi.p\|Nanoce1779_2\|611052:105774..107526 -
jgi.p\|Nanoce1779_2\|611052	mRNA	jgi.p\|Nanoce1779_2\|611052:105774..107526 -
CDS_10570	CDS	CDS_10570:107251..107445 -
CDS_10570	CDS	CDS_10570:106233..107156 -
jgi.p\|Nanoce1779_2\|611054	gene	jgi.p\|Nanoce1779_2\|611054:107715..109230 +
jgi.p\|Nanoce1779_2\|611054	mRNA	jgi.p\|Nanoce1779_2\|611054:107715..109230 +
CDS_10571	CDS	CDS_10571:108092..108925 +
jgi.p\|Nanoce1779_2\|611055	gene	jgi.p\|Nanoce1779_2\|611055:109104..110237 +
jgi.p\|Nanoce1779_2\|611055	mRNA	jgi.p\|Nanoce1779_2\|611055:109104..110237 +
CDS_10572	CDS	CDS_10572:109134..109724 +
jgi.p\|Nanoce1779_2\|634049	gene	jgi.p\|Nanoce1779_2\|634049:97616..99339 -
jgi.p\|Nanoce1779_2\|634049	mRNA	jgi.p\|Nanoce1779_2\|634049:97616..99339 -
CDS_10568	CDS	CDS_10568:98684..98845 -
CDS_10568	CDS	CDS_10568:97662..98306 -
jgi.p\|Nanoce1779_2\|347320	polypeptide	jgi.p\|Nanoce1779_2\|347320:80014..82393 -
jgi.p\|Nanoce1779_2\|610960	polypeptide	jgi.p\|Nanoce1779_2\|610960:77907..79413 +
jgi.p\|Nanoce1779_2\|610973	polypeptide	jgi.p\|Nanoce1779_2\|610973:82405..85173 -
jgi.p\|Nanoce1779_2\|610981	polypeptide	jgi.p\|Nanoce1779_2\|610981:85340..86690 -
jgi.p\|Nanoce1779_2\|610988	polypeptide	jgi.p\|Nanoce1779_2\|610988:87413..88919 +
jgi.p\|Nanoce1779_2\|611002	polypeptide	jgi.p\|Nanoce1779_2\|611002:89777..90912 +
jgi.p\|Nanoce1779_2\|611004	polypeptide	jgi.p\|Nanoce1779_2\|611004:91672..93129 -
jgi.p\|Nanoce1779_2\|611011	polypeptide	jgi.p\|Nanoce1779_2\|611011:93585..94516 +
jgi.p\|Nanoce1779_2\|611018	polypeptide	jgi.p\|Nanoce1779_2\|611018:95475..96832 +
jgi.p\|Nanoce1779_2\|611034	polypeptide	jgi.p\|Nanoce1779_2\|611034:99711..104163 +
jgi.p\|Nanoce1779_2\|611052	polypeptide	jgi.p\|Nanoce1779_2\|611052:106233..107445 -
jgi.p\|Nanoce1779_2\|611054	polypeptide	jgi.p\|Nanoce1779_2\|611054:108092..108925 +
jgi.p\|Nanoce1779_2\|611055	polypeptide	jgi.p\|Nanoce1779_2\|611055:109134..109724 +
jgi.p\|Nanoce1779_2\|634049	polypeptide	jgi.p\|Nanoce1779_2\|634049:97662..98845 -
ncniL075	syntenic_region	ncniL075:79903..110237 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications