jgi.p|Nanoce1779_2|610960, mRNA_10559 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610960
Unique Name	mRNA_10559
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1072
Alignment location	scaffold_53:77889..79696 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	611046
Track	FilteredModels2
ProteinId	610960

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_53	supercontig	scaffold_53:77889..79696 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610960	gene_10559	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610960	mRNA_10559-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10559	CDS_10559	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_53:77889..79696+
coding sequence from alignment at scaffold_53:77889..79696+

mRNA sequence

>mRNA_10559 ID=mRNA_10559|Name=jgi.p|Nanoce1779_2|610960|organism=Nannochloropsis oceanica|type=mRNA|length=1072bp
CAGATCAATCTATAAATCATGCGAAGGTCAATGGCGACCCGGGGCATCCT
GATGCTCCTGGTGGCTTGCGTGTGCGGCAGCGTCCAAGGCCAGCTTTCGG
CGCGTAAGAAGATAGCATCAGGCTCCAGCAAGGCAGGCGTGGCCGAGGCG
TGGGACCAGATGGGGGAGCAGGTCAAGGCCAACGCGGAGGCAGTCAAGGC
AGCCATGCCAGGCCTCTTGGATCCCGTGGGCTCGACGAGCAAGCTGGCCT
TTTTCCAGGCCGTGAAGAAGGCTGGCGGCGTGGACGCCATCGAGTTATTC
GACACTGTCATCAAGAGCAAGGCCTTTGAGAAAATCCTGGAGAACGTGGA
GGTGCAGCACCGGTTGATGGAGGAAATTCCCATCCTCGGAGCCATTCCAG
GCTTTCTGGAGGTAAAGGGCCGACGCCTCAGCGACGAGGAGACCAAGGCC
GGGTTTAGGAAGGGCATGCAAAACATGTGGAACATGATGAAGACTGTGGC
CGAACACGCCAAGGACCCCACACTCATGAACACAAAGCTGGTGGAACTCT
CAAAGTCCGATGACCCTGAGATTTTGGCGCTGTTCAAGGCAGCGGGTGAG
AACGACGAGGCCTCGATAATGGAGCTGCAGAACATGGTGGCCGCCGACCT
TTACCCCGGCGTGGACGTGTCTGTCATGCGTGACATCCTGGACGCACAGA
GCTTCGACAAGATCTTGTCCTTCCCCGAGCTCTCCCGCTTCGTCGACCAG
GACCCCTACCTAGCCAAGGTGCTGAGGACGCCCAAGTAAAGGCGTGTAGG
CACGAAATAATATTTTAATAAAGTATTCAAGAGAGGGAAATGGTAGGTTG
AGAAAACTGTGATTTCAAGGAGGGGATGAGGGAGGATAAAGCAAGAGGTA
ATAGGACAAGAAGCTATGGCCGTCGACGAAGATGCAAAGTATATTATTGA
TTGCTTGCCAAAGAGTGAATCTAAGAGAACTCTTTCTCCAAAGAGTGAAT
CTAAGAGAACTCTTTCGGGTGCCCAGATGTCGAACGAAGGATAAAGAAGG
AATTATGGCATCAAGTGTGCGG

protein sequence of jgi.p|Nanoce1779_2|610960

>mRNA_10559-protein ID=mRNA_10559-protein|Name=jgi.p|Nanoce1779_2|610960|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MRRSMATRGILMLLVACVCGSVQGQLSARKKIASGSSKAGVAEAWDQMGE
QVKANAEAVKAAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKS
KAFEKILENVEVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGM
QNMWNMMKTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASI
MELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAK
VLRTPK*

mRNA from alignment at scaffold_53:77889..79696+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10559 ID=mRNA_10559|Name=jgi.p|Nanoce1779_2|610960|organism=Nannochloropsis oceanica|type=mRNA|length=1808bp|location=Sequence derived from alignment at scaffold_53:77889..79696+ (Nannochloropsis oceanica)
CAGATCAATCTATAAATCATGCGAAGGTCAATGGCGACCCGGGGCATCCT
GATGCTCCTGGTGGCTTGCGTGTGCGGCAGCGTCCAAGGCCAGCTTTCGG
CGCGTAAGAAGATAGCATCAGGCTCCAGCAAGGCAGGCGTGGCCGAGGCG
TGGGACCAGATGGGGGAGCAGGTCAAGGCCAACGCGGAGGCAGTCAAGGC
AGCCATGCCAGGCCGTAAGTAGAACGAAGAAGTGGGAGAAGGTTGAGACA
TTGATGCCTGCACGCGCACACCCATCTACAGCATTTTCGTTTCCCCTACA
CTTTTCCTTTTCTATCGCTCTCTCCAGTCTTGGATCCCGTGGGCTCGACG
AGCAAGCTGGCCTTTTTCCAGGCCGTGAAGAAGGCTGGCGGCGTGGACGC
CATCGAGTTATTCGACACTGTCATCAAGAGCAAGGCCTTTGAGGTAGGCA
CAATCTCAATGTGTGTCTCTGTGTATGTGTATGTGTATGTCTACGTGTGT
GTGCGTGTAGGGTGTGTGATACTCTCTAATTCCTTGCATTTCTCTCTCTT
ACACGTCCCTCACTTTCCCTCCTTCCTTATCTTCTTTCCACCCTTCTTCC
TAACACCAGAAAATCCTGGAGAACGTGGAGGTGCAGCACCGGTTGATGGA
GGAAATTCCCATCCTCGGAGCCATTCCAGGCTTTCTGGAGGTAAAGGGCC
GACGCCTCAGCGACGAGGAGGTGCGGTGCAGCGGGAAGGAGGGGAGAGGG
TGAGGGAGGAATTTCGTTGGTTGAGCGTATTTCCTTTACAATCATAATCA
TCGACCTTGCGCTTTACCACCTCCTCCTCTATATTCAGACCAAGGCCGGG
TTTAGGAAGGGCATGCAAAACATGTGGAACATGATGAAGACTGTGGCCGA
ACACGCCAAGGTAAGCCTTCCTTCCGCCCTCCCTCCTTCCCTGTCTTTCC
CTTTCTCATCCGCCCTCCTGCTTCCCCTATTTTTGATTCCAGGACCCCAC
ACTCATGAACACAAAGCTGGTGGAACTCTCAAAGTCCGATGACCCTGAGA
TTTTGGTAAGGAGACGTGGGAAAAGACGGAAGAGAAGAAGGGCGCTTCCT
CTCCATCCACAACCACCGACTACCTCTCTTCAGTCTCTGTCCCTCACGTA
TTTCCCTCGCCACCTTTTGTTTTCCCTTATTCTGCTCTCCAGGCGCTGTT
CAAGGCAGCGGGTGAGAACGACGAGGCCTCGATAATGGAGCTGCAGAACA
TGGTGGCCGCCGACCTTTACCCCGGTACGAGGCAATGAAGGAGAGAGGGA
GGGAAGGAGGGATGGAGGGAGGGAGGGACAGCAAAGAAGCGACGCCAAAG
AGTCACGTCACTCACTTTATGCTATTACTCTTATCTATGCATAGGCGTGG
ACGTGTCTGTCATGCGTGACATCCTGGACGCACAGAGCTTCGACAAGATC
TTGTCCTTCCCCGAGCTCTCCCGCTTCGTCGACCAGGACCCCTACCTAGC
CAAGGTGCTGAGGACGCCCAAGTAAAGGCGTGTAGGCACGAAATAATATT
TTAATAAAGTATTCAAGAGAGGGAAATGGTAGGTTGAGAAAACTGTGATT
TCAAGGAGGGGATGAGGGAGGATAAAGCAAGAGGTAATAGGACAAGAAGC
TATGGCCGTCGACGAAGATGCAAAGTATATTATTGATTGCTTGCCAAAGA
GTGAATCTAAGAGAACTCTTTCTCCAAAGAGTGAATCTAAGAGAACTCTT
TCGGGTGCCCAGATGTCGAACGAAGGATAAAGAAGGAATTATGGCATCAA
GTGTGCGG

Coding sequence (CDS) from alignment at scaffold_53:77889..79696+

>mRNA_10559 ID=mRNA_10559|Name=jgi.p|Nanoce1779_2|610960|organism=Nannochloropsis oceanica|type=CDS|length=5397bp|location=Sequence derived from alignment at scaffold_53:77889..79696+ (Nannochloropsis oceanica)
ATGCGAAGGTCAATGGCGACCCGGGGCATCCTGATGCTCCTGGTGGCTTG
CGTGTGCGGCAGCGTCCAAGGCCAGCTTTCGGCGCGTAAGAAGATAGCAT
CAGGCTCCAGCAAGGCAGGCGTGGCCGAGGCGTGGGACCAGATGGGGGAG
CAGGTCAAGGCCAACGCGGAGGCAGTCAAGGCAGCCATGCCAGGCCTCTT
GGATCCCGTGGGCTCGACGAGCAAGCTGGCCTTTTTCCAGGCCGTGAAGA
AGGCTGGCGGCGTGGACGCCATCGAGTTATTCGACACTGTCATCAAGAGC
AAGGCCTTTGAGAAAATCCTGGAGAACGTGGAGGTGCAGCACCGGTTGAT
GGAGGAAATTCCCATCCTCGGAGCCATTCCAGGCTTTCTGGAGGTAAAGG
GCCGACGCCTCAGCGACGAGGAGACCAAGGCCGGGTTTAGGAAGGGCATG
CAAAACATGTGGAACATGATGAAGACTGTGGCCGAACACGCCAAGGACCC
CACACTCATGAACACAAAGCTGGTGGAACTCTCAAAGTCCGATGACCCTG
AGATTTTGGCGCTGTTCAAGGCAGCGGGTGAGAACGACGAGGCCTCGATA
ATGGAGCTGCAGAACATGGTGGCCGCCGACCTTTACCCCGGCGTGGACGT
GTCTGTCATGCGTGACATCCTGGACGCACAGAGCTTCGACAAGATCTTGT
CCTTCCCCGAGCTCTCCCGCTTCGTCGACCAGGACCCCTACCTAGCCAAG
GTGCTGAGGACGCCCAAGTAAATGCGAAGGTCAATGGCGACCCGGGGCAT
CCTGATGCTCCTGGTGGCTTGCGTGTGCGGCAGCGTCCAAGGCCAGCTTT
CGGCGCGTAAGAAGATAGCATCAGGCTCCAGCAAGGCAGGCGTGGCCGAG
GCGTGGGACCAGATGGGGGAGCAGGTCAAGGCCAACGCGGAGGCAGTCAA
GGCAGCCATGCCAGGCCTCTTGGATCCCGTGGGCTCGACGAGCAAGCTGG
CCTTTTTCCAGGCCGTGAAGAAGGCTGGCGGCGTGGACGCCATCGAGTTA
TTCGACACTGTCATCAAGAGCAAGGCCTTTGAGAAAATCCTGGAGAACGT
GGAGGTGCAGCACCGGTTGATGGAGGAAATTCCCATCCTCGGAGCCATTC
CAGGCTTTCTGGAGGTAAAGGGCCGACGCCTCAGCGACGAGGAGACCAAG
GCCGGGTTTAGGAAGGGCATGCAAAACATGTGGAACATGATGAAGACTGT
GGCCGAACACGCCAAGGACCCCACACTCATGAACACAAAGCTGGTGGAAC
TCTCAAAGTCCGATGACCCTGAGATTTTGGCGCTGTTCAAGGCAGCGGGT
GAGAACGACGAGGCCTCGATAATGGAGCTGCAGAACATGGTGGCCGCCGA
CCTTTACCCCGGCGTGGACGTGTCTGTCATGCGTGACATCCTGGACGCAC
AGAGCTTCGACAAGATCTTGTCCTTCCCCGAGCTCTCCCGCTTCGTCGAC
CAGGACCCCTACCTAGCCAAGGTGCTGAGGACGCCCAAGTAAATGCGAAG
GTCAATGGCGACCCGGGGCATCCTGATGCTCCTGGTGGCTTGCGTGTGCG
GCAGCGTCCAAGGCCAGCTTTCGGCGCGTAAGAAGATAGCATCAGGCTCC
AGCAAGGCAGGCGTGGCCGAGGCGTGGGACCAGATGGGGGAGCAGGTCAA
GGCCAACGCGGAGGCAGTCAAGGCAGCCATGCCAGGCCTCTTGGATCCCG
TGGGCTCGACGAGCAAGCTGGCCTTTTTCCAGGCCGTGAAGAAGGCTGGC
GGCGTGGACGCCATCGAGTTATTCGACACTGTCATCAAGAGCAAGGCCTT
TGAGAAAATCCTGGAGAACGTGGAGGTGCAGCACCGGTTGATGGAGGAAA
TTCCCATCCTCGGAGCCATTCCAGGCTTTCTGGAGGTAAAGGGCCGACGC
CTCAGCGACGAGGAGACCAAGGCCGGGTTTAGGAAGGGCATGCAAAACAT
GTGGAACATGATGAAGACTGTGGCCGAACACGCCAAGGACCCCACACTCA
TGAACACAAAGCTGGTGGAACTCTCAAAGTCCGATGACCCTGAGATTTTG
GCGCTGTTCAAGGCAGCGGGTGAGAACGACGAGGCCTCGATAATGGAGCT
GCAGAACATGGTGGCCGCCGACCTTTACCCCGGCGTGGACGTGTCTGTCA
TGCGTGACATCCTGGACGCACAGAGCTTCGACAAGATCTTGTCCTTCCCC
GAGCTCTCCCGCTTCGTCGACCAGGACCCCTACCTAGCCAAGGTGCTGAG
GACGCCCAAGTAAATGCGAAGGTCAATGGCGACCCGGGGCATCCTGATGC
TCCTGGTGGCTTGCGTGTGCGGCAGCGTCCAAGGCCAGCTTTCGGCGCGT
AAGAAGATAGCATCAGGCTCCAGCAAGGCAGGCGTGGCCGAGGCGTGGGA
CCAGATGGGGGAGCAGGTCAAGGCCAACGCGGAGGCAGTCAAGGCAGCCA
TGCCAGGCCTCTTGGATCCCGTGGGCTCGACGAGCAAGCTGGCCTTTTTC
CAGGCCGTGAAGAAGGCTGGCGGCGTGGACGCCATCGAGTTATTCGACAC
TGTCATCAAGAGCAAGGCCTTTGAGAAAATCCTGGAGAACGTGGAGGTGC
AGCACCGGTTGATGGAGGAAATTCCCATCCTCGGAGCCATTCCAGGCTTT
CTGGAGGTAAAGGGCCGACGCCTCAGCGACGAGGAGACCAAGGCCGGGTT
TAGGAAGGGCATGCAAAACATGTGGAACATGATGAAGACTGTGGCCGAAC
ACGCCAAGGACCCCACACTCATGAACACAAAGCTGGTGGAACTCTCAAAG
TCCGATGACCCTGAGATTTTGGCGCTGTTCAAGGCAGCGGGTGAGAACGA
CGAGGCCTCGATAATGGAGCTGCAGAACATGGTGGCCGCCGACCTTTACC
CCGGCGTGGACGTGTCTGTCATGCGTGACATCCTGGACGCACAGAGCTTC
GACAAGATCTTGTCCTTCCCCGAGCTCTCCCGCTTCGTCGACCAGGACCC
CTACCTAGCCAAGGTGCTGAGGACGCCCAAGTAAATGCGAAGGTCAATGG
CGACCCGGGGCATCCTGATGCTCCTGGTGGCTTGCGTGTGCGGCAGCGTC
CAAGGCCAGCTTTCGGCGCGTAAGAAGATAGCATCAGGCTCCAGCAAGGC
AGGCGTGGCCGAGGCGTGGGACCAGATGGGGGAGCAGGTCAAGGCCAACG
CGGAGGCAGTCAAGGCAGCCATGCCAGGCCTCTTGGATCCCGTGGGCTCG
ACGAGCAAGCTGGCCTTTTTCCAGGCCGTGAAGAAGGCTGGCGGCGTGGA
CGCCATCGAGTTATTCGACACTGTCATCAAGAGCAAGGCCTTTGAGAAAA
TCCTGGAGAACGTGGAGGTGCAGCACCGGTTGATGGAGGAAATTCCCATC
CTCGGAGCCATTCCAGGCTTTCTGGAGGTAAAGGGCCGACGCCTCAGCGA
CGAGGAGACCAAGGCCGGGTTTAGGAAGGGCATGCAAAACATGTGGAACA
TGATGAAGACTGTGGCCGAACACGCCAAGGACCCCACACTCATGAACACA
AAGCTGGTGGAACTCTCAAAGTCCGATGACCCTGAGATTTTGGCGCTGTT
CAAGGCAGCGGGTGAGAACGACGAGGCCTCGATAATGGAGCTGCAGAACA
TGGTGGCCGCCGACCTTTACCCCGGCGTGGACGTGTCTGTCATGCGTGAC
ATCCTGGACGCACAGAGCTTCGACAAGATCTTGTCCTTCCCCGAGCTCTC
CCGCTTCGTCGACCAGGACCCCTACCTAGCCAAGGTGCTGAGGACGCCCA
AGTAAATGCGAAGGTCAATGGCGACCCGGGGCATCCTGATGCTCCTGGTG
GCTTGCGTGTGCGGCAGCGTCCAAGGCCAGCTTTCGGCGCGTAAGAAGAT
AGCATCAGGCTCCAGCAAGGCAGGCGTGGCCGAGGCGTGGGACCAGATGG
GGGAGCAGGTCAAGGCCAACGCGGAGGCAGTCAAGGCAGCCATGCCAGGC
CTCTTGGATCCCGTGGGCTCGACGAGCAAGCTGGCCTTTTTCCAGGCCGT
GAAGAAGGCTGGCGGCGTGGACGCCATCGAGTTATTCGACACTGTCATCA
AGAGCAAGGCCTTTGAGAAAATCCTGGAGAACGTGGAGGTGCAGCACCGG
TTGATGGAGGAAATTCCCATCCTCGGAGCCATTCCAGGCTTTCTGGAGGT
AAAGGGCCGACGCCTCAGCGACGAGGAGACCAAGGCCGGGTTTAGGAAGG
GCATGCAAAACATGTGGAACATGATGAAGACTGTGGCCGAACACGCCAAG
GACCCCACACTCATGAACACAAAGCTGGTGGAACTCTCAAAGTCCGATGA
CCCTGAGATTTTGGCGCTGTTCAAGGCAGCGGGTGAGAACGACGAGGCCT
CGATAATGGAGCTGCAGAACATGGTGGCCGCCGACCTTTACCCCGGCGTG
GACGTGTCTGTCATGCGTGACATCCTGGACGCACAGAGCTTCGACAAGAT
CTTGTCCTTCCCCGAGCTCTCCCGCTTCGTCGACCAGGACCCCTACCTAG
CCAAGGTGCTGAGGACGCCCAAGTAAATGCGAAGGTCAATGGCGACCCGG
GGCATCCTGATGCTCCTGGTGGCTTGCGTGTGCGGCAGCGTCCAAGGCCA
GCTTTCGGCGCGTAAGAAGATAGCATCAGGCTCCAGCAAGGCAGGCGTGG
CCGAGGCGTGGGACCAGATGGGGGAGCAGGTCAAGGCCAACGCGGAGGCA
GTCAAGGCAGCCATGCCAGGCCTCTTGGATCCCGTGGGCTCGACGAGCAA
GCTGGCCTTTTTCCAGGCCGTGAAGAAGGCTGGCGGCGTGGACGCCATCG
AGTTATTCGACACTGTCATCAAGAGCAAGGCCTTTGAGAAAATCCTGGAG
AACGTGGAGGTGCAGCACCGGTTGATGGAGGAAATTCCCATCCTCGGAGC
CATTCCAGGCTTTCTGGAGGTAAAGGGCCGACGCCTCAGCGACGAGGAGA
CCAAGGCCGGGTTTAGGAAGGGCATGCAAAACATGTGGAACATGATGAAG
ACTGTGGCCGAACACGCCAAGGACCCCACACTCATGAACACAAAGCTGGT
GGAACTCTCAAAGTCCGATGACCCTGAGATTTTGGCGCTGTTCAAGGCAG
CGGGTGAGAACGACGAGGCCTCGATAATGGAGCTGCAGAACATGGTGGCC
GCCGACCTTTACCCCGGCGTGGACGTGTCTGTCATGCGTGACATCCTGGA
CGCACAGAGCTTCGACAAGATCTTGTCCTTCCCCGAGCTCTCCCGCTTCG
TCGACCAGGACCCCTACCTAGCCAAGGTGCTGAGGACGCCCAAGTAA

Synonyms

Publications