jgi.p|Nanoce1779_2|634049, mRNA_10568 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|634049
Unique NamemRNA_10568
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1254
Alignment locationscaffold_53:97616..99339 -

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Properties
Property NameValue
TranscriptId634135
TrackFilteredModels2
ProteinId634049
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_53supercontigscaffold_53:97616..99339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634049gene_10568Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634049mRNA_10568-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10568CDS_10568Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10568 ID=mRNA_10568|Name=jgi.p|Nanoce1779_2|634049|organism=Nannochloropsis oceanica|type=mRNA|length=1254bp
AGCCTCCACAATAACACAGCACGCCTTCAAGCAGCTATGGCAGATAGCAG
TGGCTCGGGTCAGGTGCCGTCACGGAAGCGGCCCGCAGCAGCCCTAAAAA
GGTGTAAAAAAGCAGAGGGGAGGGGGGGCGGGCGGGAGGGAGGATGGCAT
GGACGAAAGTTACGTGCAGCATGGATGGTGCTATGTGGTTGCTCCAGCCC
GGGGAATAGGTTACTTAATTCTTTTCATTCCCGGGCACACATCCCACGAG
ACTGACGATTCTCCCTGCCTATACATATAAAAATACATACATTCAACACG
GTTGGCGTAATCATCCTCCCCTCCCCCCTCCCGCCATTAGCAAAGGCAAA
GAGAAGGCAGACACCGGGACGCCATCGACCTCGAGCACGGGCAAGCGACG
CATGCTCGACACGACGCGGCAAGGCGTACGAGTATGGTTGGTCAAAGTGC
CCGTGGCGGTCGCAGAAGCCATCAAGAACGCCCAGGAGGGAGACAAGATC
GGGACACTGACCGTCAGTCGGAGCAATGGTAGCGGTGGCAGCGGTGGGGG
AGGGCAGGAGCTGCGCACCGAGGCCGTGCGTCTCGAGGAATCTCTGTGCG
AGCGCCTGGAGCTGCCCCGCGATTTCAGCCTAGAAGCCCCCCCCCCCGAC
ACGAGAATGCCCAAGATGTACGCCCTGCGTGCCGCCTCCACAGAGAGGGC
AGGGAAGGAAGGAGGAGGGGCAGGAGCCCTAGAGGGACGAATGATGGTGG
AGGGGGTGGTGAGTCGCCGCACCAGCATGCTGCCCACAGCCTCCCTGGAC
TATCGGGCCTTTGCCAAGAAGAGGCAGATACAGCATCATCGGAAGGAGAG
GCGGCTGGAGCTGTTGGTTGGAGGAGGAGAAAGAGGAAACGGAGGGGTAC
GAAAAATGATTGACCTTAACGCCCCTCTCGATGGGGGGGCAGGAGGAGGA
GGGGGAGGAGGGGGAGGAGGGGAAGGGGGGATGAAGAGAGCTAGGCTCGA
CGAAGCGGCGCTGCGGACGACCTTGTTCCAGTGCTTCAAGCTCAAAGCGG
CCTGGGCGGCGCGGGAGCTGGTGCAGCGCTTGGGGCAGCCGGAGGGCAGT
GTTAAGGCGGCGCTGCGGGAGATAGCCGACTACCAGAGCCAGGGTGAGCA
TTTCGGGAAGTATCTACTCAAGCCGGCCTGGACGGGGGCGGGTTTGAAAA
AGGGGTAAGGGAAGAAAAAGGGAGTTGGAGAGGAATAGGAGGGAGGGAGG
GAAG
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protein sequence of jgi.p|Nanoce1779_2|634049

>mRNA_10568-protein ID=mRNA_10568-protein|Name=jgi.p|Nanoce1779_2|634049|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MLDTTRQGVRVWLVKVPVAVAEAIKNAQEGDKIGTLTVSRSNGSGGSGGG
GQELRTEAVRLEESLCERLELPRDFSLEAPPPDTRMPKMYALRAASTERA
GKEGGGAGALEGRMMVEGVVSRRTSMLPTASLDYRAFAKKRQIQHHRKER
RLELLVGGGERGNGGVRKMIDLNAPLDGGAGGGGGGGGGGEGGMKRARLD
EAALRTTLFQCFKLKAAWAARELVQRLGQPEGSVKAALREIADYQSQGEH
FGKYLLKPAWTGAGLKKG*
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mRNA from alignment at scaffold_53:97616..99339-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10568 ID=mRNA_10568|Name=jgi.p|Nanoce1779_2|634049|organism=Nannochloropsis oceanica|type=mRNA|length=1724bp|location=Sequence derived from alignment at scaffold_53:97616..99339- (Nannochloropsis oceanica)
AGCCTCCACAATAACACAGCACGCCTTCAAGCAGCTATGGCAGATAGCAG
TGGCTCGGGTCAGGTGCCGTCACGGAAGCGGCCCGCAGCAGCCCTAAAAA
GGTGTAAAAAAGCAGAGGGGAGGGGGGGCGGGCGGGAGGGAGGATGGCAT
GGACGAAAGTTACGTGCAGCATGGATGGTGCTATGTGGTTGCTCCAGCCC
GGGGAATAGGTTACTTAATTCTTTTCATTCCCGGGCACACATCCCACGAG
ACTGACGATTCTCCCTGCCTATACATATAAAAATACATACATTCAACACG
GTTGGCGTAATCATCCTCCCCTCCCCCCTCCCGCCATTAGCAAAGGTACG
TTCCTTCTTCCCTTTCTCCCTCATCCCCCTTCCCACTCCATCCTTCTCAC
TCATTTTTTGACGCATCTATACAATCACCCCTTCACAGGCAAAGAGAAGG
CAGACACCGGGACGCCATCGACCTCGAGCACGGGCAAGCGACGCATGCTC
GACACGACGCGGCAAGGCGTACGAGTATGGTTGGTCAAAGTGCCCGTGGC
GGTCGCAGAAGCCATCAAGAACGCCCAGGAGGGAGACAAGATCGGGACAC
TGACCGTCAGTCGGAGCAATGGTAGCGGTGGCAGCGGTGGGGGAGGGCAG
GAGCTGGTGAGTGAGAGTGTGAAAGGGAGCGTGGCGGGGATGAGATGGGA
GATGGAGGGAGGGAGGGGAAAGAGGGAGAGGAGATAGGATGCTGAGCGTA
GTCAGAGCAGTGATGCTGATGTAGTGATAGAAATAATGGTTTGGGATGGG
CAAGAAGGGAGGAAGGGGGAAATGCCAAGAAAGAGATACCAATAAGAGAG
AGGAGCATGAGGAAGAAAACAGTTGAGGCGGGCGGTGGTGCCAGCACCAG
CGTGCACAACACTCCCCGGATGATGAATGACAAGGAGGCGGAAAATATTG
GGTGGAAAGGAATTGATAGCCCCTTGCTTCGAACCAACCTCTATCGTTCT
CCTTGTTCCCCCACCACCACACGGACATGGTAGCGCACCGAGGCCGTGCG
TCTCGAGGAATCTCTGTGCGAGCGCCTGGAGCTGCCCCGCGATTTCAGCC
TAGAAGCCCCCCCCCCCGACACGAGAATGCCCAAGATGTACGCCCTGCGT
GCCGCCTCCACAGAGAGGGCAGGGAAGGAAGGAGGAGGGGCAGGAGCCCT
AGAGGGACGAATGATGGTGGAGGGGGTGGTGAGTCGCCGCACCAGCATGC
TGCCCACAGCCTCCCTGGACTATCGGGCCTTTGCCAAGAAGAGGCAGATA
CAGCATCATCGGAAGGAGAGGCGGCTGGAGCTGTTGGTTGGAGGAGGAGA
AAGAGGAAACGGAGGGGTACGAAAAATGATTGACCTTAACGCCCCTCTCG
ATGGGGGGGCAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGGGAAGGGGGG
ATGAAGAGAGCTAGGCTCGACGAAGCGGCGCTGCGGACGACCTTGTTCCA
GTGCTTCAAGCTCAAAGCGGCCTGGGCGGCGCGGGAGCTGGTGCAGCGCT
TGGGGCAGCCGGAGGGCAGTGTTAAGGCGGCGCTGCGGGAGATAGCCGAC
TACCAGAGCCAGGGTGAGCATTTCGGGAAGTATCTACTCAAGCCGGCCTG
GACGGGGGCGGGTTTGAAAAAGGGGTAAGGGAAGAAAAAGGGAGTTGGAG
AGGAATAGGAGGGAGGGAGGGAAG
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Coding sequence (CDS) from alignment at scaffold_53:97616..99339-

>mRNA_10568 ID=mRNA_10568|Name=jgi.p|Nanoce1779_2|634049|organism=Nannochloropsis oceanica|type=CDS|length=1614bp|location=Sequence derived from alignment at scaffold_53:97616..99339- (Nannochloropsis oceanica)
CGCACCGAGGCCGTGCGTCTCGAGGAATCTCTGTGCGAGCGCCTGGAGCT
GCCCCGCGATTTCAGCCTAGAAGCCCCCCCCCCCGACACGAGAATGCCCA
AGATGTACGCCCTGCGTGCCGCCTCCACAGAGAGGGCAGGGAAGGAAGGA
GGAGGGGCAGGAGCCCTAGAGGGACGAATGATGGTGGAGGGGGTGGTGAG
TCGCCGCACCAGCATGCTGCCCACAGCCTCCCTGGACTATCGGGCCTTTG
CCAAGAAGAGGCAGATACAGCATCATCGGAAGGAGAGGCGGCTGGAGCTG
TTGGTTGGAGGAGGAGAAAGAGGAAACGGAGGGGTACGAAAAATGATTGA
CCTTAACGCCCCTCTCGATGGGGGGGCAGGAGGAGGAGGGGGAGGAGGGG
GAGGAGGGGAAGGGGGGATGAAGAGAGCTAGGCTCGACGAAGCGGCGCTG
CGGACGACCTTGTTCCAGTGCTTCAAGCTCAAAGCGGCCTGGGCGGCGCG
GGAGCTGGTGCAGCGCTTGGGGCAGCCGGAGGGCAGTGTTAAGGCGGCGC
TGCGGGAGATAGCCGACTACCAGAGCCAGGGTGAGCATTTCGGGAAGTAT
CTACTCAAGCCGGCCTGGACGGGGGCGGGTTTGAAAAAGGGGTAAATGCT
CGACACGACGCGGCAAGGCGTACGAGTATGGTTGGTCAAAGTGCCCGTGG
CGGTCGCAGAAGCCATCAAGAACGCCCAGGAGGGAGACAAGATCGGGACA
CTGACCGTCAGTCGGAGCAATGGTAGCGGTGGCAGCGGTGGGGGAGGGCA
GGAGCTGCGCACCGAGGCCGTGCGTCTCGAGGAATCTCTGTGCGAGCGCC
TGGAGCTGCCCCGCGATTTCAGCCTAGAAGCCCCCCCCCCCGACACGAGA
ATGCCCAAGATGTACGCCCTGCGTGCCGCCTCCACAGAGAGGGCAGGGAA
GGAAGGAGGAGGGGCAGGAGCCCTAGAGGGACGAATGATGGTGGAGGGGG
TGGTGAGTCGCCGCACCAGCATGCTGCCCACAGCCTCCCTGGACTATCGG
GCCTTTGCCAAGAAGAGGCAGATACAGCATCATCGGAAGGAGAGGCGGCT
GGAGCTGTTGGTTGGAGGAGGAGAAAGAGGAAACGGAGGGGTACGAAAAA
TGATTGACCTTAACGCCCCTCTCGATGGGGGGGCAGGAGGAGGAGGGGGA
GGAGGGGGAGGAGGGGAAGGGGGGATGAAGAGAGCTAGGCTCGACGAAGC
GGCGCTGCGGACGACCTTGTTCCAGTGCTTCAAGCTCAAAGCGGCCTGGG
CGGCGCGGGAGCTGGTGCAGCGCTTGGGGCAGCCGGAGGGCAGTGTTAAG
GCGGCGCTGCGGGAGATAGCCGACTACCAGAGCCAGGGTGAGCATTTCGG
GAAGTATCTACTCAAGCCGGCCTGGACGGGGGCGGGTTTGAAAAAGGGGT
AAATGCTCGACACGACGCGGCAAGGCGTACGAGTATGGTTGGTCAAAGTG
CCCGTGGCGGTCGCAGAAGCCATCAAGAACGCCCAGGAGGGAGACAAGAT
CGGGACACTGACCGTCAGTCGGAGCAATGGTAGCGGTGGCAGCGGTGGGG
GAGGGCAGGAGCTG
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Synonyms
Publications