jgi.p|Nanoce1779_2|610988, mRNA_10563 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610988
Unique Name	mRNA_10563
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1025
Alignment location	scaffold_53:87413..89173 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	611074
Track	FilteredModels2
ProteinId	610988

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_53	supercontig	scaffold_53:87413..89173 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610988	gene_10563	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610988	mRNA_10563-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10563	CDS_10563	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_53:87413..89173+
coding sequence from alignment at scaffold_53:87413..89173+

mRNA sequence

>mRNA_10563 ID=mRNA_10563|Name=jgi.p|Nanoce1779_2|610988|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp
ATGCAAAGATTAATGGCGACCCGGGGCATCCTGATGCTCCTGGTGGCTTG
CGTGTGCGGCAGCGTCCAAGGCCAGCTTTCGGCGCGTAAGAAGATAGCAT
CAGGCTCCAGCAAGGCAGGCGTGGCCGAGGCGTGGGACCAGATGGGGGAG
CAGGTCAAGGCCAACGCGGAGGCAGTCAAGGCAGCCATGCCAGGCCTCTT
GGATCCCGTGGGCTCGACGAGCAAGCTGGCCTTTTTCCAGGCCGTGAAGA
AGGCTGGCGGCGTGGACGCCATCGAGTTATTCGACACTGTCATCAAGAGC
AAGGCCTTTGAGAAAATCCTGGAGAACGTGGAGGTGCAGCACCGGTTGAT
GGAGGAAATTCCCATCCTCGGAGCCATTCCAGGCTTTCTGGAGGTAAAGG
GCCGACGCCTCAGCGACGAGGAGACCAAGGCCGGGTTTAGGAAGGGCATG
CAAAACATGTGGAACATGATGAAGACTGTGGCCGAACACGCCAAGGACCC
CACACTCATGAACACAAAGCTGGTGGAACTCTCAAAGTCCGATGACCCTG
AGATTTTGGCGCTGTTCAAGGCAGCGGGTGAGAACGACGAGGCCTCGATA
ATGGAGCTGCAGAACATGGTGGCCGCCGACCTTTACCCCGGCGTGGACGT
GTCTGTCATGCGTGACATCCTGGACGCACAGAGCTTCGACAAGATCTTGT
CCTTCCCCGAGCTCTCCCGCTTCGTCGACCAGGACCCCTACCTAGCCAAG
GTGCTGAGGACGCCCAAGTAAAGGCGTGTAGGCACGAAATAATATTTTAA
TAAAGTATTCAAGAGAGGGAAATGGTAGGTTGAGAAAACTGTGATTTCAA
GGAGGGGATGAGGGAGGATAAAGCAAGAGGTAATAGGACAAGAAGCTATG
GCCGTCGACGAAGATGCAAAGTATGTTATTGATTGCTTGCCAAAAGGCAG
GTTATAGAAAAATCCTTGGGATGTTTCTGCCTAGAAAGTCAATTAAACGA
ATGAAGAAATAACGATGTTACCAAA

protein sequence of jgi.p|Nanoce1779_2|610988

>mRNA_10563-protein ID=mRNA_10563-protein|Name=jgi.p|Nanoce1779_2|610988|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MQRLMATRGILMLLVACVCGSVQGQLSARKKIASGSSKAGVAEAWDQMGE
QVKANAEAVKAAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKS
KAFEKILENVEVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGM
QNMWNMMKTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASI
MELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAK
VLRTPK*

mRNA from alignment at scaffold_53:87413..89173+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10563 ID=mRNA_10563|Name=jgi.p|Nanoce1779_2|610988|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp|location=Sequence derived from alignment at scaffold_53:87413..89173+ (Nannochloropsis oceanica)
ATGCAAAGATTAATGGCGACCCGGGGCATCCTGATGCTCCTGGTGGCTTG
CGTGTGCGGCAGCGTCCAAGGCCAGCTTTCGGCGCGTAAGAAGATAGCAT
CAGGCTCCAGCAAGGCAGGCGTGGCCGAGGCGTGGGACCAGATGGGGGAG
CAGGTCAAGGCCAACGCGGAGGCAGTCAAGGCAGCCATGCCAGGCCGTAA
GTAGAACGAAGAAGTGGGAGAAGGTTGAGACATTGATGCCTGCACGCGCA
CACCCATCTACAGCATTTTCGTTTCCCCTACACTTTTCCTTTTCTATCGC
TCTCTCCAGTCTTGGATCCCGTGGGCTCGACGAGCAAGCTGGCCTTTTTC
CAGGCCGTGAAGAAGGCTGGCGGCGTGGACGCCATCGAGTTATTCGACAC
TGTCATCAAGAGCAAGGCCTTTGAGGTAGGCACAATCTCAATGTGTGTCT
CTGTGTATGTGTATGTGTATGTCTACGTGTGTGTGCGTGTAGGGTGTGTG
ATACTCTCTAATTCCTTGCATTTCTCTCTCTTACACGTCCCTCACTTTCC
CTCCTTCCTTATCTTCTTTCCACCCTTCTTCCTAACACCAGAAAATCCTG
GAGAACGTGGAGGTGCAGCACCGGTTGATGGAGGAAATTCCCATCCTCGG
AGCCATTCCAGGCTTTCTGGAGGTAAAGGGCCGACGCCTCAGCGACGAGG
AGGTGCGGTGCAGCGGGAAGGAGGGGAGAGGGTGAGGGAGGAATTTCGTT
GGTTGAGCGTATTTCCTTTACAATCATAATCATCGACCTTGCGCTTTACC
ACCTCCTCCTCTATATTCAGACCAAGGCCGGGTTTAGGAAGGGCATGCAA
AACATGTGGAACATGATGAAGACTGTGGCCGAACACGCCAAGGTAAGCCT
TCCTTCCGCCCTCCCTCCTTCCCTGTCTTTCCCTTTCTCATCCGCCCTCC
TGCTTCCCCTATTTTTGATTCCAGGACCCCACACTCATGAACACAAAGCT
GGTGGAACTCTCAAAGTCCGATGACCCTGAGATTTTGGTAAGGAGACGTG
GGAAAAGACGGAAGAGAAGAAGGGCGCTTCCTCTCCATCCACAACCACCG
ACTACCTCTCTTCAGTCTCTGTCCCTCACGTATTTCCCTCGCCACCTTTT
GTTTTCCCTTATTCTGCTCTCCAGGCGCTGTTCAAGGCAGCGGGTGAGAA
CGACGAGGCCTCGATAATGGAGCTGCAGAACATGGTGGCCGCCGACCTTT
ACCCCGGTACGAGGCAATGAAGGAGAGAGGGAGGGAAGGAGGGATGGAGG
GAGGGAGGGACAGCAAAGAAGTGACGCCAAAGAGTCACGTCACTCACTTT
ATGCTATTACTCTTATCTATGCATAGGCGTGGACGTGTCTGTCATGCGTG
ACATCCTGGACGCACAGAGCTTCGACAAGATCTTGTCCTTCCCCGAGCTC
TCCCGCTTCGTCGACCAGGACCCCTACCTAGCCAAGGTGCTGAGGACGCC
CAAGTAAAGGCGTGTAGGCACGAAATAATATTTTAATAAAGTATTCAAGA
GAGGGAAATGGTAGGTTGAGAAAACTGTGATTTCAAGGAGGGGATGAGGG
AGGATAAAGCAAGAGGTAATAGGACAAGAAGCTATGGCCGTCGACGAAGA
TGCAAAGTATGTTATTGATTGCTTGCCAAAAGGCAGGTTATAGAAAAATC
CTTGGGATGTTTCTGCCTAGAAAGTCAATTAAACGAATGAAGAAATAACG
ATGTTACCAAA

Coding sequence (CDS) from alignment at scaffold_53:87413..89173+

>mRNA_10563 ID=mRNA_10563|Name=jgi.p|Nanoce1779_2|610988|organism=Nannochloropsis oceanica|type=CDS|length=5397bp|location=Sequence derived from alignment at scaffold_53:87413..89173+ (Nannochloropsis oceanica)
ATGCAAAGATTAATGGCGACCCGGGGCATCCTGATGCTCCTGGTGGCTTG
CGTGTGCGGCAGCGTCCAAGGCCAGCTTTCGGCGCGTAAGAAGATAGCAT
CAGGCTCCAGCAAGGCAGGCGTGGCCGAGGCGTGGGACCAGATGGGGGAG
CAGGTCAAGGCCAACGCGGAGGCAGTCAAGGCAGCCATGCCAGGCCTCTT
GGATCCCGTGGGCTCGACGAGCAAGCTGGCCTTTTTCCAGGCCGTGAAGA
AGGCTGGCGGCGTGGACGCCATCGAGTTATTCGACACTGTCATCAAGAGC
AAGGCCTTTGAGAAAATCCTGGAGAACGTGGAGGTGCAGCACCGGTTGAT
GGAGGAAATTCCCATCCTCGGAGCCATTCCAGGCTTTCTGGAGGTAAAGG
GCCGACGCCTCAGCGACGAGGAGACCAAGGCCGGGTTTAGGAAGGGCATG
CAAAACATGTGGAACATGATGAAGACTGTGGCCGAACACGCCAAGGACCC
CACACTCATGAACACAAAGCTGGTGGAACTCTCAAAGTCCGATGACCCTG
AGATTTTGGCGCTGTTCAAGGCAGCGGGTGAGAACGACGAGGCCTCGATA
ATGGAGCTGCAGAACATGGTGGCCGCCGACCTTTACCCCGGCGTGGACGT
GTCTGTCATGCGTGACATCCTGGACGCACAGAGCTTCGACAAGATCTTGT
CCTTCCCCGAGCTCTCCCGCTTCGTCGACCAGGACCCCTACCTAGCCAAG
GTGCTGAGGACGCCCAAGTAAATGCAAAGATTAATGGCGACCCGGGGCAT
CCTGATGCTCCTGGTGGCTTGCGTGTGCGGCAGCGTCCAAGGCCAGCTTT
CGGCGCGTAAGAAGATAGCATCAGGCTCCAGCAAGGCAGGCGTGGCCGAG
GCGTGGGACCAGATGGGGGAGCAGGTCAAGGCCAACGCGGAGGCAGTCAA
GGCAGCCATGCCAGGCCTCTTGGATCCCGTGGGCTCGACGAGCAAGCTGG
CCTTTTTCCAGGCCGTGAAGAAGGCTGGCGGCGTGGACGCCATCGAGTTA
TTCGACACTGTCATCAAGAGCAAGGCCTTTGAGAAAATCCTGGAGAACGT
GGAGGTGCAGCACCGGTTGATGGAGGAAATTCCCATCCTCGGAGCCATTC
CAGGCTTTCTGGAGGTAAAGGGCCGACGCCTCAGCGACGAGGAGACCAAG
GCCGGGTTTAGGAAGGGCATGCAAAACATGTGGAACATGATGAAGACTGT
GGCCGAACACGCCAAGGACCCCACACTCATGAACACAAAGCTGGTGGAAC
TCTCAAAGTCCGATGACCCTGAGATTTTGGCGCTGTTCAAGGCAGCGGGT
GAGAACGACGAGGCCTCGATAATGGAGCTGCAGAACATGGTGGCCGCCGA
CCTTTACCCCGGCGTGGACGTGTCTGTCATGCGTGACATCCTGGACGCAC
AGAGCTTCGACAAGATCTTGTCCTTCCCCGAGCTCTCCCGCTTCGTCGAC
CAGGACCCCTACCTAGCCAAGGTGCTGAGGACGCCCAAGTAAATGCAAAG
ATTAATGGCGACCCGGGGCATCCTGATGCTCCTGGTGGCTTGCGTGTGCG
GCAGCGTCCAAGGCCAGCTTTCGGCGCGTAAGAAGATAGCATCAGGCTCC
AGCAAGGCAGGCGTGGCCGAGGCGTGGGACCAGATGGGGGAGCAGGTCAA
GGCCAACGCGGAGGCAGTCAAGGCAGCCATGCCAGGCCTCTTGGATCCCG
TGGGCTCGACGAGCAAGCTGGCCTTTTTCCAGGCCGTGAAGAAGGCTGGC
GGCGTGGACGCCATCGAGTTATTCGACACTGTCATCAAGAGCAAGGCCTT
TGAGAAAATCCTGGAGAACGTGGAGGTGCAGCACCGGTTGATGGAGGAAA
TTCCCATCCTCGGAGCCATTCCAGGCTTTCTGGAGGTAAAGGGCCGACGC
CTCAGCGACGAGGAGACCAAGGCCGGGTTTAGGAAGGGCATGCAAAACAT
GTGGAACATGATGAAGACTGTGGCCGAACACGCCAAGGACCCCACACTCA
TGAACACAAAGCTGGTGGAACTCTCAAAGTCCGATGACCCTGAGATTTTG
GCGCTGTTCAAGGCAGCGGGTGAGAACGACGAGGCCTCGATAATGGAGCT
GCAGAACATGGTGGCCGCCGACCTTTACCCCGGCGTGGACGTGTCTGTCA
TGCGTGACATCCTGGACGCACAGAGCTTCGACAAGATCTTGTCCTTCCCC
GAGCTCTCCCGCTTCGTCGACCAGGACCCCTACCTAGCCAAGGTGCTGAG
GACGCCCAAGTAAATGCAAAGATTAATGGCGACCCGGGGCATCCTGATGC
TCCTGGTGGCTTGCGTGTGCGGCAGCGTCCAAGGCCAGCTTTCGGCGCGT
AAGAAGATAGCATCAGGCTCCAGCAAGGCAGGCGTGGCCGAGGCGTGGGA
CCAGATGGGGGAGCAGGTCAAGGCCAACGCGGAGGCAGTCAAGGCAGCCA
TGCCAGGCCTCTTGGATCCCGTGGGCTCGACGAGCAAGCTGGCCTTTTTC
CAGGCCGTGAAGAAGGCTGGCGGCGTGGACGCCATCGAGTTATTCGACAC
TGTCATCAAGAGCAAGGCCTTTGAGAAAATCCTGGAGAACGTGGAGGTGC
AGCACCGGTTGATGGAGGAAATTCCCATCCTCGGAGCCATTCCAGGCTTT
CTGGAGGTAAAGGGCCGACGCCTCAGCGACGAGGAGACCAAGGCCGGGTT
TAGGAAGGGCATGCAAAACATGTGGAACATGATGAAGACTGTGGCCGAAC
ACGCCAAGGACCCCACACTCATGAACACAAAGCTGGTGGAACTCTCAAAG
TCCGATGACCCTGAGATTTTGGCGCTGTTCAAGGCAGCGGGTGAGAACGA
CGAGGCCTCGATAATGGAGCTGCAGAACATGGTGGCCGCCGACCTTTACC
CCGGCGTGGACGTGTCTGTCATGCGTGACATCCTGGACGCACAGAGCTTC
GACAAGATCTTGTCCTTCCCCGAGCTCTCCCGCTTCGTCGACCAGGACCC
CTACCTAGCCAAGGTGCTGAGGACGCCCAAGTAAATGCAAAGATTAATGG
CGACCCGGGGCATCCTGATGCTCCTGGTGGCTTGCGTGTGCGGCAGCGTC
CAAGGCCAGCTTTCGGCGCGTAAGAAGATAGCATCAGGCTCCAGCAAGGC
AGGCGTGGCCGAGGCGTGGGACCAGATGGGGGAGCAGGTCAAGGCCAACG
CGGAGGCAGTCAAGGCAGCCATGCCAGGCCTCTTGGATCCCGTGGGCTCG
ACGAGCAAGCTGGCCTTTTTCCAGGCCGTGAAGAAGGCTGGCGGCGTGGA
CGCCATCGAGTTATTCGACACTGTCATCAAGAGCAAGGCCTTTGAGAAAA
TCCTGGAGAACGTGGAGGTGCAGCACCGGTTGATGGAGGAAATTCCCATC
CTCGGAGCCATTCCAGGCTTTCTGGAGGTAAAGGGCCGACGCCTCAGCGA
CGAGGAGACCAAGGCCGGGTTTAGGAAGGGCATGCAAAACATGTGGAACA
TGATGAAGACTGTGGCCGAACACGCCAAGGACCCCACACTCATGAACACA
AAGCTGGTGGAACTCTCAAAGTCCGATGACCCTGAGATTTTGGCGCTGTT
CAAGGCAGCGGGTGAGAACGACGAGGCCTCGATAATGGAGCTGCAGAACA
TGGTGGCCGCCGACCTTTACCCCGGCGTGGACGTGTCTGTCATGCGTGAC
ATCCTGGACGCACAGAGCTTCGACAAGATCTTGTCCTTCCCCGAGCTCTC
CCGCTTCGTCGACCAGGACCCCTACCTAGCCAAGGTGCTGAGGACGCCCA
AGTAAATGCAAAGATTAATGGCGACCCGGGGCATCCTGATGCTCCTGGTG
GCTTGCGTGTGCGGCAGCGTCCAAGGCCAGCTTTCGGCGCGTAAGAAGAT
AGCATCAGGCTCCAGCAAGGCAGGCGTGGCCGAGGCGTGGGACCAGATGG
GGGAGCAGGTCAAGGCCAACGCGGAGGCAGTCAAGGCAGCCATGCCAGGC
CTCTTGGATCCCGTGGGCTCGACGAGCAAGCTGGCCTTTTTCCAGGCCGT
GAAGAAGGCTGGCGGCGTGGACGCCATCGAGTTATTCGACACTGTCATCA
AGAGCAAGGCCTTTGAGAAAATCCTGGAGAACGTGGAGGTGCAGCACCGG
TTGATGGAGGAAATTCCCATCCTCGGAGCCATTCCAGGCTTTCTGGAGGT
AAAGGGCCGACGCCTCAGCGACGAGGAGACCAAGGCCGGGTTTAGGAAGG
GCATGCAAAACATGTGGAACATGATGAAGACTGTGGCCGAACACGCCAAG
GACCCCACACTCATGAACACAAAGCTGGTGGAACTCTCAAAGTCCGATGA
CCCTGAGATTTTGGCGCTGTTCAAGGCAGCGGGTGAGAACGACGAGGCCT
CGATAATGGAGCTGCAGAACATGGTGGCCGCCGACCTTTACCCCGGCGTG
GACGTGTCTGTCATGCGTGACATCCTGGACGCACAGAGCTTCGACAAGAT
CTTGTCCTTCCCCGAGCTCTCCCGCTTCGTCGACCAGGACCCCTACCTAG
CCAAGGTGCTGAGGACGCCCAAGTAAATGCAAAGATTAATGGCGACCCGG
GGCATCCTGATGCTCCTGGTGGCTTGCGTGTGCGGCAGCGTCCAAGGCCA
GCTTTCGGCGCGTAAGAAGATAGCATCAGGCTCCAGCAAGGCAGGCGTGG
CCGAGGCGTGGGACCAGATGGGGGAGCAGGTCAAGGCCAACGCGGAGGCA
GTCAAGGCAGCCATGCCAGGCCTCTTGGATCCCGTGGGCTCGACGAGCAA
GCTGGCCTTTTTCCAGGCCGTGAAGAAGGCTGGCGGCGTGGACGCCATCG
AGTTATTCGACACTGTCATCAAGAGCAAGGCCTTTGAGAAAATCCTGGAG
AACGTGGAGGTGCAGCACCGGTTGATGGAGGAAATTCCCATCCTCGGAGC
CATTCCAGGCTTTCTGGAGGTAAAGGGCCGACGCCTCAGCGACGAGGAGA
CCAAGGCCGGGTTTAGGAAGGGCATGCAAAACATGTGGAACATGATGAAG
ACTGTGGCCGAACACGCCAAGGACCCCACACTCATGAACACAAAGCTGGT
GGAACTCTCAAAGTCCGATGACCCTGAGATTTTGGCGCTGTTCAAGGCAG
CGGGTGAGAACGACGAGGCCTCGATAATGGAGCTGCAGAACATGGTGGCC
GCCGACCTTTACCCCGGCGTGGACGTGTCTGTCATGCGTGACATCCTGGA
CGCACAGAGCTTCGACAAGATCTTGTCCTTCCCCGAGCTCTCCCGCTTCG
TCGACCAGGACCCCTACCTAGCCAAGGTGCTGAGGACGCCCAAGTAA

Synonyms

Publications