jgi.p|Nanoce1779_2|611011, mRNA_10566 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611011
Unique NamemRNA_10566
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length839
Alignment locationscaffold_53:93575..94772 +

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Properties
Property NameValue
TranscriptId611097
TrackFilteredModels2
ProteinId611011
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_53supercontigscaffold_53:93575..94772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611011gene_10566Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611011mRNA_10566-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10566CDS_10566Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10566 ID=mRNA_10566|Name=jgi.p|Nanoce1779_2|611011|organism=Nannochloropsis oceanica|type=mRNA|length=839bp
ACAGATAATTATGGGATCCCGTGCCTTTCTGGGCCTTTGTGCCTTGCTTT
TGGCGTGCATGGTTTACGCCACAGACCCTCCTGTTTGGCCCGATATCGAC
TTTGTATCCTTCAAGTCCAACAGGGCGAGCCAACGCAAGGGAAAGAGCAT
CCGGTTTACCGGCATCTTCAGGGTCAACAACTTTGGGCTGAATGACATCA
CCTACTGCGGGTTCAAGAATGAAAACAGCAGCATAATTACAACCAGCACT
GGCGCTGCAGGAATTCGCTTCAAGCAGCAGAACACACTGTTTAAAGCCAA
GTGGTACATCAAGGAGGTCCGCTCCATGGGCCGCATTGTCTGGGAATTCA
CCCCCAACGGGTACGCCTTGACGCAGGGCCGGACCTACACTACCCGCATG
GTCGTCAGGGTTGCCAAGGACACCCCCCAAGATGCCTACACTTGGCGCTT
CTTCTGCGAGTCCAAATACACAAACTCCAGTGATTTCACATATCCAGGCC
ATTACGCTTTCGGCAAGATCTACAAGACTGTACGTATCTCGGACGGGCTC
GTATCCTCTTGCGTACGGAACCCTACTCAATAACCATTACTCTGCTACCC
CATAGATCCCCCTTCTGCCGGCCAAAAACTGAATGAGGCACTTACGAAAA
AGTGAAAACTATTGGACTACGATACGATTATGCGGTAGGGGCACGCAGGA
GAAAAAAAGATCTCGACATGGCGGCTGAGCAGGAAGGATAATACGAGGAT
TAAGCGAAAGGACAGCGGGCTTGGCTTGCTTGTCTCCGGTATTAGAAGAA
AGGAGATGGAGACAAAAGAAGTCCAGCAATACAATCTAA
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protein sequence of jgi.p|Nanoce1779_2|611011

>mRNA_10566-protein ID=mRNA_10566-protein|Name=jgi.p|Nanoce1779_2|611011|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MGSRAFLGLCALLLACMVYATDPPVWPDIDFVSFKSNRASQRKGKSIRFT
GIFRVNNFGLNDITYCGFKNENSSIITTSTGAAGIRFKQQNTLFKAKWYI
KEVRSMGRIVWEFTPNGYALTQGRTYTTRMVVRVAKDTPQDAYTWRFFCE
SKYTNSSDFTYPGHYAFGKIYKTVRISDGLVSSCVRNPTQ*
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mRNA from alignment at scaffold_53:93575..94772+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10566 ID=mRNA_10566|Name=jgi.p|Nanoce1779_2|611011|organism=Nannochloropsis oceanica|type=mRNA|length=1198bp|location=Sequence derived from alignment at scaffold_53:93575..94772+ (Nannochloropsis oceanica)
ACAGATAATTATGGGATCCCGTGCCTTTCTGGGCCTTTGTGCCTTGCTTT
TGGCGTGCATGGTAAGTCGGTCCAACAATTATGCGTGACCAGTGGTTGGA
TAGCCTGCATAGTCCTTGCCTGCCTGGCATTTATGTCGACGTCGTCCCGA
ATCACTCTTGTACCGAATCACCACCCATAGGTTTACGCCACAGACCCTCC
TGTTTGGCCCGATATCGACTTTGTATCCTTCAAGTCCAACAGGGCGAGCC
AACGCAAGGGAAAGAGCATCCGGTTTACCGGCATCTTCAGGGTCAACAAC
TTTGGGCTGAATGACATCACCTACTGCGGGGTGAGTCGGACAAAGGAATA
AGAAAGAAAGGATCGGCGTGAGCGGTGAATGATTCACGCGCTTGGTATTA
CATTTATCCGGTACTCATGCACGTTATCTCCCCTCTTTTTGCTCCACTCC
CCATCTTGTCCGACCAACAACAGTTCAAGAATGAAAACAGCAGCATAATT
ACAACCAGCACTGGCGCTGCAGGAATTCGCTTCAAGCAGCAGAACACACT
GTTTAAAGCCAAGTGGTACATCAAGGAGGTCCGCTCCATGGGCCGCATTG
TCTGGTAATAAACACCCGCACCCCTCCGGATATCTCTGCCATTCCATGCT
CCCTTCCCCTTTTCGCTCACCCCATTTCCACCCTTTTTCTCATTTCATCA
GGGAATTCACCCCCAACGGGTACGCCTTGACGCAGGGCCGGACCTACACT
ACCCGCATGGTCGTCAGGGTTGCCAAGGACACCCCCCAAGATGCCTACAC
TTGGCGCTTCTTCTGCGAGTCCAAATACACAAACTCCAGTGATTTCACAT
ATCCAGGCCATTACGCTTTCGGCAAGATCTACAAGACTGTACGTATCTCG
GACGGGCTCGTATCCTCTTGCGTACGGAACCCTACTCAATAACCATTACT
CTGCTACCCCATAGATCCCCCTTCTGCCGGCCAAAAACTGAATGAGGCAC
TTACGAAAAAGTGAAAACTATTGGACTACGATACGATTATGCGGTAGGGG
CACGCAGGAGAAAAAAAGATCTCGACATGGCGGCTGAGCAGGAAGGATAA
TACGAGGATTAAGCGAAAGGACAGCGGGCTTGGCTTGCTTGTCTCCGGTA
TTAGAAGAAAGGAGATGGAGACAAAAGAAGTCCAGCAATACAATCTAA
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Coding sequence (CDS) from alignment at scaffold_53:93575..94772+

>mRNA_10566 ID=mRNA_10566|Name=jgi.p|Nanoce1779_2|611011|organism=Nannochloropsis oceanica|type=CDS|length=2292bp|location=Sequence derived from alignment at scaffold_53:93575..94772+ (Nannochloropsis oceanica)
ATGGGATCCCGTGCCTTTCTGGGCCTTTGTGCCTTGCTTTTGGCGTGCAT
GGTTTACGCCACAGACCCTCCTGTTTGGCCCGATATCGACTTTGTATCCT
TCAAGTCCAACAGGGCGAGCCAACGCAAGGGAAAGAGCATCCGGTTTACC
GGCATCTTCAGGGTCAACAACTTTGGGCTGAATGACATCACCTACTGCGG
GTTCAAGAATGAAAACAGCAGCATAATTACAACCAGCACTGGCGCTGCAG
GAATTCGCTTCAAGCAGCAGAACACACTGTTTAAAGCCAAGTGGTACATC
AAGGAGGTCCGCTCCATGGGCCGCATTGTCTGGGAATTCACCCCCAACGG
GTACGCCTTGACGCAGGGCCGGACCTACACTACCCGCATGGTCGTCAGGG
TTGCCAAGGACACCCCCCAAGATGCCTACACTTGGCGCTTCTTCTGCGAG
TCCAAATACACAAACTCCAGTGATTTCACATATCCAGGCCATTACGCTTT
CGGCAAGATCTACAAGACTGTACGTATCTCGGACGGGCTCGTATCCTCTT
GCGTACGGAACCCTACTCAATAAATGGGATCCCGTGCCTTTCTGGGCCTT
TGTGCCTTGCTTTTGGCGTGCATGGTTTACGCCACAGACCCTCCTGTTTG
GCCCGATATCGACTTTGTATCCTTCAAGTCCAACAGGGCGAGCCAACGCA
AGGGAAAGAGCATCCGGTTTACCGGCATCTTCAGGGTCAACAACTTTGGG
CTGAATGACATCACCTACTGCGGGTTCAAGAATGAAAACAGCAGCATAAT
TACAACCAGCACTGGCGCTGCAGGAATTCGCTTCAAGCAGCAGAACACAC
TGTTTAAAGCCAAGTGGTACATCAAGGAGGTCCGCTCCATGGGCCGCATT
GTCTGGGAATTCACCCCCAACGGGTACGCCTTGACGCAGGGCCGGACCTA
CACTACCCGCATGGTCGTCAGGGTTGCCAAGGACACCCCCCAAGATGCCT
ACACTTGGCGCTTCTTCTGCGAGTCCAAATACACAAACTCCAGTGATTTC
ACATATCCAGGCCATTACGCTTTCGGCAAGATCTACAAGACTGTACGTAT
CTCGGACGGGCTCGTATCCTCTTGCGTACGGAACCCTACTCAATAAATGG
GATCCCGTGCCTTTCTGGGCCTTTGTGCCTTGCTTTTGGCGTGCATGGTT
TACGCCACAGACCCTCCTGTTTGGCCCGATATCGACTTTGTATCCTTCAA
GTCCAACAGGGCGAGCCAACGCAAGGGAAAGAGCATCCGGTTTACCGGCA
TCTTCAGGGTCAACAACTTTGGGCTGAATGACATCACCTACTGCGGGTTC
AAGAATGAAAACAGCAGCATAATTACAACCAGCACTGGCGCTGCAGGAAT
TCGCTTCAAGCAGCAGAACACACTGTTTAAAGCCAAGTGGTACATCAAGG
AGGTCCGCTCCATGGGCCGCATTGTCTGGGAATTCACCCCCAACGGGTAC
GCCTTGACGCAGGGCCGGACCTACACTACCCGCATGGTCGTCAGGGTTGC
CAAGGACACCCCCCAAGATGCCTACACTTGGCGCTTCTTCTGCGAGTCCA
AATACACAAACTCCAGTGATTTCACATATCCAGGCCATTACGCTTTCGGC
AAGATCTACAAGACTGTACGTATCTCGGACGGGCTCGTATCCTCTTGCGT
ACGGAACCCTACTCAATAAATGGGATCCCGTGCCTTTCTGGGCCTTTGTG
CCTTGCTTTTGGCGTGCATGGTTTACGCCACAGACCCTCCTGTTTGGCCC
GATATCGACTTTGTATCCTTCAAGTCCAACAGGGCGAGCCAACGCAAGGG
AAAGAGCATCCGGTTTACCGGCATCTTCAGGGTCAACAACTTTGGGCTGA
ATGACATCACCTACTGCGGGTTCAAGAATGAAAACAGCAGCATAATTACA
ACCAGCACTGGCGCTGCAGGAATTCGCTTCAAGCAGCAGAACACACTGTT
TAAAGCCAAGTGGTACATCAAGGAGGTCCGCTCCATGGGCCGCATTGTCT
GGGAATTCACCCCCAACGGGTACGCCTTGACGCAGGGCCGGACCTACACT
ACCCGCATGGTCGTCAGGGTTGCCAAGGACACCCCCCAAGATGCCTACAC
TTGGCGCTTCTTCTGCGAGTCCAAATACACAAACTCCAGTGATTTCACAT
ATCCAGGCCATTACGCTTTCGGCAAGATCTACAAGACTGTACGTATCTCG
GACGGGCTCGTATCCTCTTGCGTACGGAACCCTACTCAATAA
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Synonyms
Publications