jgi.p|Nanoce1779_2|611055, mRNA_10572 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611055
Unique NamemRNA_10572
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1134
Alignment locationscaffold_53:109104..110237 +

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Properties
Property NameValue
TranscriptId611141
TrackFilteredModels2
ProteinId611055
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_53supercontigscaffold_53:109104..110237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611055gene_10572Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611055mRNA_10572-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10572CDS_10572Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10572 ID=mRNA_10572|Name=jgi.p|Nanoce1779_2|611055|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp
ACAGCAAACAAGACTTCTCCGTTACACAACATGCGTTGCGCGGTTTCTCT
GCTTGCCCTCGGCATCACCCTCGCCGTTACGGTGGCTGAGCCGGATGACC
CGACCTTAATCCTCACCTCCATCAAGGCTGTTGACAACGCCAGGCCGTAT
AAGGACAAATGGAGTATGAAGGGCTACCTCAATGACCCTGAGGCGGTAGC
AATCCAGGCCATTGACGTGCTTGGCATGTCCGCGGGGATTGGAAACGAAA
TCACCTCCACAACCTTGAGCTTGATCGAATTTGACGCGGGTGATTGCAAA
TTGCTGAAAAATGATAATGGAATCATTTGTAAGACTACGGGCGCTCGTGT
CTCTTTCAAGAGGTCTAAGAGGGTGCCCAAGGACGCCATGATTCAGGCGC
AGAGAAACCGAAACACGACCACCGCATCTTCCTACTACAGGGTTTCGGGT
GCTTTTAGCCGCCAGGAATTCAATGCCACTGTATCACCGCCTCTTTCTGC
AGGTGTCCTCGTAATGTCTACTGGAATAACTGACGTCAATTCTAAATGCA
CTGAGAAAGGAGGAGCTAGGGTCACTAAGGTCTTTTGCACGCCTGGTCCA
TTATCACCCACCCGAAAATAGTGTTCGTCTTCGACCGTCGAATAGATATG
GCTTCATGGACATTGTGCAAACACCGCTCGACCCTCGCACGGATGCTCTA
AACTTGACGGGATCTCTTGTGTTGTGTTTGTGTTATGCGTCCTGTATCTT
CTTGTTCTGTGGTGGCCCCAGTTTTCTTTCCTGACCGGGGCGACTGGATA
TCAACATGCGTAACAGTGCGTCTATTTGTTGGTTCTATGATATGTATCTG
GTGGGCTTCTATGCATTTTCTTGCTCGATCACTAGTTGTGTTCTTAGATC
TATCGTCTCGATCATTTTGCAAGGGCCGATTAAAGTCTAATGTGTGTTTT
GTGTTGTGTGTTTGTGCACTCCCTTGCTCGAGGGCTACTTGTGTTGTGTG
AGCTTTTACTTCTTCAAAGGTTCTTCGAAAAGGACGATTACAGAGCTCCG
CTTTTGAGGATTGGATTCGACTGAAACAAGCCTTAAGAAAGAAGAAAATT
TGCCGCGCGCGAAACAGAGCGCGCACCCCCATTA
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protein sequence of jgi.p|Nanoce1779_2|611055

>mRNA_10572-protein ID=mRNA_10572-protein|Name=jgi.p|Nanoce1779_2|611055|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MRCAVSLLALGITLAVTVAEPDDPTLILTSIKAVDNARPYKDKWSMKGYL
NDPEAVAIQAIDVLGMSAGIGNEITSTTLSLIEFDAGDCKLLKNDNGIIC
KTTGARVSFKRSKRVPKDAMIQAQRNRNTTTASSYYRVSGAFSRQEFNAT
VSPPLSAGVLVMSTGITDVNSKCTEKGGARVTKVFCTPGPLSPTRK*
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mRNA from alignment at scaffold_53:109104..110237+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10572 ID=mRNA_10572|Name=jgi.p|Nanoce1779_2|611055|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp|location=Sequence derived from alignment at scaffold_53:109104..110237+ (Nannochloropsis oceanica)
ACAGCAAACAAGACTTCTCCGTTACACAACATGCGTTGCGCGGTTTCTCT
GCTTGCCCTCGGCATCACCCTCGCCGTTACGGTGGCTGAGCCGGATGACC
CGACCTTAATCCTCACCTCCATCAAGGCTGTTGACAACGCCAGGCCGTAT
AAGGACAAATGGAGTATGAAGGGCTACCTCAATGACCCTGAGGCGGTAGC
AATCCAGGCCATTGACGTGCTTGGCATGTCCGCGGGGATTGGAAACGAAA
TCACCTCCACAACCTTGAGCTTGATCGAATTTGACGCGGGTGATTGCAAA
TTGCTGAAAAATGATAATGGAATCATTTGTAAGACTACGGGCGCTCGTGT
CTCTTTCAAGAGGTCTAAGAGGGTGCCCAAGGACGCCATGATTCAGGCGC
AGAGAAACCGAAACACGACCACCGCATCTTCCTACTACAGGGTTTCGGGT
GCTTTTAGCCGCCAGGAATTCAATGCCACTGTATCACCGCCTCTTTCTGC
AGGTGTCCTCGTAATGTCTACTGGAATAACTGACGTCAATTCTAAATGCA
CTGAGAAAGGAGGAGCTAGGGTCACTAAGGTCTTTTGCACGCCTGGTCCA
TTATCACCCACCCGAAAATAGTGTTCGTCTTCGACCGTCGAATAGATATG
GCTTCATGGACATTGTGCAAACACCGCTCGACCCTCGCACGGATGCTCTA
AACTTGACGGGATCTCTTGTGTTGTGTTTGTGTTATGCGTCCTGTATCTT
CTTGTTCTGTGGTGGCCCCAGTTTTCTTTCCTGACCGGGGCGACTGGATA
TCAACATGCGTAACAGTGCGTCTATTTGTTGGTTCTATGATATGTATCTG
GTGGGCTTCTATGCATTTTCTTGCTCGATCACTAGTTGTGTTCTTAGATC
TATCGTCTCGATCATTTTGCAAGGGCCGATTAAAGTCTAATGTGTGTTTT
GTGTTGTGTGTTTGTGCACTCCCTTGCTCGAGGGCTACTTGTGTTGTGTG
AGCTTTTACTTCTTCAAAGGTTCTTCGAAAAGGACGATTACAGAGCTCCG
CTTTTGAGGATTGGATTCGACTGAAACAAGCCTTAAGAAAGAAGAAAATT
TGCCGCGCGCGAAACAGAGCGCGCACCCCCATTA
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Coding sequence (CDS) from alignment at scaffold_53:109104..110237+

>mRNA_10572 ID=mRNA_10572|Name=jgi.p|Nanoce1779_2|611055|organism=Nannochloropsis oceanica|type=CDS|length=591bp|location=Sequence derived from alignment at scaffold_53:109104..110237+ (Nannochloropsis oceanica)
ATGCGTTGCGCGGTTTCTCTGCTTGCCCTCGGCATCACCCTCGCCGTTAC
GGTGGCTGAGCCGGATGACCCGACCTTAATCCTCACCTCCATCAAGGCTG
TTGACAACGCCAGGCCGTATAAGGACAAATGGAGTATGAAGGGCTACCTC
AATGACCCTGAGGCGGTAGCAATCCAGGCCATTGACGTGCTTGGCATGTC
CGCGGGGATTGGAAACGAAATCACCTCCACAACCTTGAGCTTGATCGAAT
TTGACGCGGGTGATTGCAAATTGCTGAAAAATGATAATGGAATCATTTGT
AAGACTACGGGCGCTCGTGTCTCTTTCAAGAGGTCTAAGAGGGTGCCCAA
GGACGCCATGATTCAGGCGCAGAGAAACCGAAACACGACCACCGCATCTT
CCTACTACAGGGTTTCGGGTGCTTTTAGCCGCCAGGAATTCAATGCCACT
GTATCACCGCCTCTTTCTGCAGGTGTCCTCGTAATGTCTACTGGAATAAC
TGACGTCAATTCTAAATGCACTGAGAAAGGAGGAGCTAGGGTCACTAAGG
TCTTTTGCACGCCTGGTCCATTATCACCCACCCGAAAATAG
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Synonyms
Publications