jgi.p|Nanoce1779_2|611018, mRNA_10567 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611018
Unique Name	mRNA_10567
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1596
Alignment location	scaffold_53:94717..97067 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	611104
Track	FilteredModels2
ProteinId	611018

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_53	supercontig	scaffold_53:94717..97067 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611018	gene_10567	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611018	mRNA_10567-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10567	CDS_10567	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_53:94717..97067+
coding sequence from alignment at scaffold_53:94717..97067+

mRNA sequence

>mRNA_10567 ID=mRNA_10567|Name=jgi.p|Nanoce1779_2|611018|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp
CTCCGGTATTAGAAGAAAGGAGATGGAGACAAAAGAAGTCCAGCAATACA
ATCTAATAACAATTGTTTCTTGTTTTTTTTTTTGGGTTTACGCTTAGTTT
TTTGCCAGGCTGCTGAAAGCAAGGGAAATGAGCATATACCCATTTTCACA
ATTGAGTAGGTTGCTAGCTCAATCCTTGTACCATGGTAGAGCTGTACTCC
TTTCTTCTCTATCTTTATCCCATGCAAAATTTTCTCTTTGGTGATGACTG
CACTTTTGAACTCAGAGGCGTCTGTAATGGAGCGGTGATGGTTTTTCCTG
GATTGATTAAGAGTGCCTGGACTTTGTACCCGATAACAGCATATGATAAA
TGACGATTTAGGGGAACGACGCGCCACTCGTCCGACTTGTATTTTTAATG
ACGGTGTGTGATCGAAGGATTTTGAAATCAGTCCAAGTCAAATCAGTCCT
CAACGGTCAAGAGCGCGTGCCTCCTCTCTCCCTGTCCTCGTCTTTGTTCT
CTTGCCACACTCCCCCTCATCTTCTCGTCGACATTTTCCCTATAGGACAC
ATACTAAGTACTCATTAGTTCTCACTATTCGTCCTCCTATAGCTCAGGTT
GTGATGTTTGTGTGGACATATGACCTTAATTTTTTTCCTGGTTCGAGCAT
GGGCCAGTCCTTGCGCTTAGCTTATTCTTCTTTGAGCCGCCTGCCCAAAC
CCACAACCTTTCCCCCTCCAACAATGCCACTATATACACAGCTGATATCG
GATCGATAATGCTGCGCGCCCTTGCCATTTCATTCTTGCTCGCCCTGAGC
TTGGGCGGAGCCGCTGGCTTTCCTCCTCTTGCGAACAATGGGAGCATGGA
ATTCATTTCCATCAGGTCCACTCGACAGAGGGTGCGGTGTGGACAGCAGC
TCGCTATTGTTTCTAAGGTCCGGCTTAATAGTTTCGGGGATGCCGACAGA
CTTTATTGCGCGTTGCAACAGACTACGGTAGAGAACACCACCGCGCACTT
CGAAGTAAAGGAGTTCATCAATCGGTTCAAGAATGTTAATACTAGAAAAT
TTGAGCTAAATTTTGGGGAAGATAATCCCGCCAGTGACGGCTCCCAGAAG
TTCTTCTGGATCTGGCACCGTGACGGACGCCTCTGGAGCGAGGGCTTGGA
CTACACTCTCCGCGTCGTGACCAAACTGGACTCCGCCACGGAGAAAATCG
CCAACTGGCGCTTCTACTGTGAGACCAAGAAGGACAACTTCACTAGCCAC
TACTACTGGCCCAAGACCGACCCCCGGGTCCAGCTGTCGACCAACATTAG
AGCGCCATGCGCACGGCCTCCGCCGAAAATGACCGCCCGAGGGCCCAAGC
AGAAGCAGTAAGTCAATCGAAGACTCACGGTAGACGAGAATCCAAGAAGT
CACCAGGAGACTCATAGTAAACGACGAGTCAAAGCAGAACAGGTAAGTCG
CTGTGAGGGCACAGAGATCGAAGCTGCAAAAAGTAGGACTCACGGAAGAG
GAGGAGAAGGAGGAAGAGGAGAAGAGGAAGAAGAGGAGGAAGAAGAGGAA
GAAGAAAGAGATGGAGGAGAAGGTAGAGAAGAAGGTAGAGGAGGAG

protein sequence of jgi.p|Nanoce1779_2|611018

>mRNA_10567-protein ID=mRNA_10567-protein|Name=jgi.p|Nanoce1779_2|611018|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MLRALAISFLLALSLGGAAGFPPLANNGSMEFISIRSTRQRVRCGQQLAI
VSKVRLNSFGDADRLYCALQQTTVENTTAHFEVKEFINRFKNVNTRKFEL
NFGEDNPASDGSQKFFWIWHRDGRLWSEGLDYTLRVVTKLDSATEKIANW
RFYCETKKDNFTSHYYWPKTDPRVQLSTNIRAPCARPPPKMTARGPKQKQ
*

mRNA from alignment at scaffold_53:94717..97067+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10567 ID=mRNA_10567|Name=jgi.p|Nanoce1779_2|611018|organism=Nannochloropsis oceanica|type=mRNA|length=2351bp|location=Sequence derived from alignment at scaffold_53:94717..97067+ (Nannochloropsis oceanica)
CTCCGGTATTAGAAGAAAGGAGATGGAGACAAAAGAAGTCCAGCAATACA
ATCTAATAACAATTGTTTCTTGTTTTTTTTTTTGGGTTTACGCTTAGTTT
TTTGCCAGGCTGCTGAAAGCAAGGGAAATGAGCATATACCCATTTTCACA
ATTGAGTAGGTTGCTAGCTCAATCCTTGTACCATGGTAGAGCTGTACTCC
TTTCTTCTCTATCTTTATCCCATGCAAAATTTTCTCTTTGGTGATGACTG
CACTTTTGAACTCAGAGGCGTCTGTAATGGAGCGGTGATGGTTTTTCCTG
GATTGATTAAGAGTGCCTGGACTTTGTACCCGATAACAGCATATGATAAA
TGACGATTTAGGGGAACGACGCGCCACTCGTCCGACTTGTATTTTTAATG
ACGGTGTGTGATCGAAGGATTTTGAAATCAGTCCAAGTCAAATCAGTCCT
CAACGGTCAAGAGCGCGTGCCTCCTCTCTCCCTGTCCTCGTCTTTGTTCT
CTTGCCACACTCCCCCTCATCTTCTCGTCGACATTTTCCCTATAGGACAC
ATACTAAGTACTCATTAGTTCTCACTATTCGTCCTCCTATAGCTCAGGTT
GTGATGTTTGTGTGGACATATGACCTTAATTTTTTTCCTGGTTCGAGCAT
GGGCCAGTCCTTGCGCTTAGCTTATTCTTCTTTGAGCCGCCTGCCCAAAC
CCACAACCTTTCCCCCTCCAACAATGCCACTATATACACAGCTGATATCG
GATCGATAATGCTGCGCGCCCTTGCCATTTCATTCTTGCTCGCCCTGGTA
CGTTGTTTCCTCTCCCATTCCTACTCCCTCCGCCCTCGTCTAATCAGTGC
GTACTGAGCCTCTTCTCACCGCTCCCTTGCTTCTCATGTGTGCATAGTCA
ATATAGCTCTGGCAGCGAGAGATATGTCCCGAAAGCTTACAATCCAAAAC
TTTACCTACTCTCCATCCAACTCTCCCATGCAGAGCTTGGGCGGAGCCGC
TGGCTTTCCTCCTCTTGCGAACAATGGGAGCATGGAATTCATTTCCATCA
GGTCCACTCGACAGAGGGTGCGGTGTGGACAGCAGCTCGCTATTGTTTCT
AAGGTCCGGCTTAATAGTTTCGGGGATGCCGACAGACTTTATTGCGCGGT
AAGAAGGAATAGCGTGGATGTGCGCGGTGGATCCCTGAATTCGGAAGTAG
AGAGCTTTTTCGTCCGTCCATCTAGATGGCATCAGTGATAAACAGAACAT
GTGGCCCCATCTCCTTTCTCACTTTGCCTTTTATTCTTCACCTCTATATT
CTCTTGTTAACGTTTGCATGTATGTCCTCATCCTCGTGGCCTGCCCCTTA
TCCCCCCTGCAGTTGCAACAGACTACGGTAGAGAACACCACCGCGCACTT
CGAAGTAAAGGAGTTCATCAATCGGTTCAAGAATGTTAATACTAGAAAAT
TTGAGCTAAATTTTGGGGAAGATAATCCCGCCAGTGACGGCTCCCAGAAG
TTCTTCTGGATCTGGCACCGTGACGGACGCCTCTGGAGCGAGGGCTTGGA
CTACACTCTCCGCGTCGTGACCAAACTGGACTCCGCCACGGAGAAAATCG
CCAACTGGCGCTTCTACTGTGAGACCAAGAAGGACAACTTCACTAGCCAC
TACTACTGGCCCAAGACCGACCCCCGGGTCCAGCTGTCGGTACGAAGGGG
GAAGGGAGGGATGGAGGGTGGAAGGGAGGGATGGAGGGTGGAGGGAGGGA
AGGGGGTAAATGAGTGAATGCGAGGCGAAGGCGGGTAAGTTGACCAGTCA
TTACTTCCGGAATCGAACAGACAAATACAAATCAGTCAGAGACCAGGGGT
CCCGGGAGTATAAGGAGACGTTGAGGGGTAGGAGGATTCCTCCGCGTCTT
CCTCTCCCTCCAAAGCCTCTTTCTCCTTTTCCTAACCCTTCTCCTCGCTT
CCTCCTCTTCTTAGTCAACCATCTGAAACCTGCGCACTACTTTGTCTCAC
TGTCGCGCCTTCCCTCTCTTCTTTCTTTTCTCGTCTCCCTACAGACCAAC
ATTAGAGCGCCATGCGCACGGCCTCCGCCGAAAATGACCGCCCGAGGGCC
CAAGCAGAAGCAGTAAGTCAATCGAAGACTCACGGTAGACGAGAATCCAA
GAAGTCACCAGGAGACTCATAGTAAACGACGAGTCAAAGCAGAACAGGTA
AGTCGCTGTGAGGGCACAGAGATCGAAGCTGCAAAAAGTAGGACTCACGG
AAGAGGAGGAGAAGGAGGAAGAGGAGAAGAGGAAGAAGAGGAGGAAGAAG
AGGAAGAAGAAAGAGATGGAGGAGAAGGTAGAGAAGAAGGTAGAGGAGGA
G

Coding sequence (CDS) from alignment at scaffold_53:94717..97067+

>mRNA_10567 ID=mRNA_10567|Name=jgi.p|Nanoce1779_2|611018|organism=Nannochloropsis oceanica|type=CDS|length=2412bp|location=Sequence derived from alignment at scaffold_53:94717..97067+ (Nannochloropsis oceanica)
ATGCTGCGCGCCCTTGCCATTTCATTCTTGCTCGCCCTGAGCTTGGGCGG
AGCCGCTGGCTTTCCTCCTCTTGCGAACAATGGGAGCATGGAATTCATTT
CCATCAGGTCCACTCGACAGAGGGTGCGGTGTGGACAGCAGCTCGCTATT
GTTTCTAAGGTCCGGCTTAATAGTTTCGGGGATGCCGACAGACTTTATTG
CGCGTTGCAACAGACTACGGTAGAGAACACCACCGCGCACTTCGAAGTAA
AGGAGTTCATCAATCGGTTCAAGAATGTTAATACTAGAAAATTTGAGCTA
AATTTTGGGGAAGATAATCCCGCCAGTGACGGCTCCCAGAAGTTCTTCTG
GATCTGGCACCGTGACGGACGCCTCTGGAGCGAGGGCTTGGACTACACTC
TCCGCGTCGTGACCAAACTGGACTCCGCCACGGAGAAAATCGCCAACTGG
CGCTTCTACTGTGAGACCAAGAAGGACAACTTCACTAGCCACTACTACTG
GCCCAAGACCGACCCCCGGGTCCAGCTGTCGACCAACATTAGAGCGCCAT
GCGCACGGCCTCCGCCGAAAATGACCGCCCGAGGGCCCAAGCAGAAGCAG
TAAATGCTGCGCGCCCTTGCCATTTCATTCTTGCTCGCCCTGAGCTTGGG
CGGAGCCGCTGGCTTTCCTCCTCTTGCGAACAATGGGAGCATGGAATTCA
TTTCCATCAGGTCCACTCGACAGAGGGTGCGGTGTGGACAGCAGCTCGCT
ATTGTTTCTAAGGTCCGGCTTAATAGTTTCGGGGATGCCGACAGACTTTA
TTGCGCGTTGCAACAGACTACGGTAGAGAACACCACCGCGCACTTCGAAG
TAAAGGAGTTCATCAATCGGTTCAAGAATGTTAATACTAGAAAATTTGAG
CTAAATTTTGGGGAAGATAATCCCGCCAGTGACGGCTCCCAGAAGTTCTT
CTGGATCTGGCACCGTGACGGACGCCTCTGGAGCGAGGGCTTGGACTACA
CTCTCCGCGTCGTGACCAAACTGGACTCCGCCACGGAGAAAATCGCCAAC
TGGCGCTTCTACTGTGAGACCAAGAAGGACAACTTCACTAGCCACTACTA
CTGGCCCAAGACCGACCCCCGGGTCCAGCTGTCGACCAACATTAGAGCGC
CATGCGCACGGCCTCCGCCGAAAATGACCGCCCGAGGGCCCAAGCAGAAG
CAGTAAATGCTGCGCGCCCTTGCCATTTCATTCTTGCTCGCCCTGAGCTT
GGGCGGAGCCGCTGGCTTTCCTCCTCTTGCGAACAATGGGAGCATGGAAT
TCATTTCCATCAGGTCCACTCGACAGAGGGTGCGGTGTGGACAGCAGCTC
GCTATTGTTTCTAAGGTCCGGCTTAATAGTTTCGGGGATGCCGACAGACT
TTATTGCGCGTTGCAACAGACTACGGTAGAGAACACCACCGCGCACTTCG
AAGTAAAGGAGTTCATCAATCGGTTCAAGAATGTTAATACTAGAAAATTT
GAGCTAAATTTTGGGGAAGATAATCCCGCCAGTGACGGCTCCCAGAAGTT
CTTCTGGATCTGGCACCGTGACGGACGCCTCTGGAGCGAGGGCTTGGACT
ACACTCTCCGCGTCGTGACCAAACTGGACTCCGCCACGGAGAAAATCGCC
AACTGGCGCTTCTACTGTGAGACCAAGAAGGACAACTTCACTAGCCACTA
CTACTGGCCCAAGACCGACCCCCGGGTCCAGCTGTCGACCAACATTAGAG
CGCCATGCGCACGGCCTCCGCCGAAAATGACCGCCCGAGGGCCCAAGCAG
AAGCAGTAAATGCTGCGCGCCCTTGCCATTTCATTCTTGCTCGCCCTGAG
CTTGGGCGGAGCCGCTGGCTTTCCTCCTCTTGCGAACAATGGGAGCATGG
AATTCATTTCCATCAGGTCCACTCGACAGAGGGTGCGGTGTGGACAGCAG
CTCGCTATTGTTTCTAAGGTCCGGCTTAATAGTTTCGGGGATGCCGACAG
ACTTTATTGCGCGTTGCAACAGACTACGGTAGAGAACACCACCGCGCACT
TCGAAGTAAAGGAGTTCATCAATCGGTTCAAGAATGTTAATACTAGAAAA
TTTGAGCTAAATTTTGGGGAAGATAATCCCGCCAGTGACGGCTCCCAGAA
GTTCTTCTGGATCTGGCACCGTGACGGACGCCTCTGGAGCGAGGGCTTGG
ACTACACTCTCCGCGTCGTGACCAAACTGGACTCCGCCACGGAGAAAATC
GCCAACTGGCGCTTCTACTGTGAGACCAAGAAGGACAACTTCACTAGCCA
CTACTACTGGCCCAAGACCGACCCCCGGGTCCAGCTGTCGACCAACATTA
GAGCGCCATGCGCACGGCCTCCGCCGAAAATGACCGCCCGAGGGCCCAAG
CAGAAGCAGTAA

Synonyms

Publications