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Properties
| Property Name | Value |
|---|
| TranscriptId | 611140 |
| Track | FilteredModels2 |
| ProteinId | 611054 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_53 | supercontig | scaffold_53:107715..109230 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10571 ID=mRNA_10571|Name=jgi.p|Nanoce1779_2|611054|organism=Nannochloropsis oceanica|type=mRNA|length=1516bp
CGGGAAGAAACCACAAATCAAAAACGACAAACCAAAAACAAAATGTCGAA
AATCAGAAACGATACAAAACCAAAAGTAGTCAATCCCTCATCGTCGAACA
TGTATTTTTTTGTGTATGCAAGTTTGGTTTCCCTCCCTCTCTCTTGAGTT
TGCAAAAGTTTGTGGTTGGCCTTTTGGCTTCCAACGCCTTACCTTGCTAG
ACGCGACATACTAGGCGACGTCATGGGCCCGTGTAGCCGCCGCGCGCGCC
CGTCAGAGCGTGACCCCTATTCCTCTTTGGCCCTATTGCCTCTGAGACAC
CGAGCTTTGCATATACACGAGCCAGGAAGAGAGCTCTAACTGCCCCTTTT
GCCCCTGGCCACCAGCTGGCAGAGGCGATGGCATTTGCGTCTCAATTCTT
GTCTGTGTGCACAATCGAAGGTCAGGACAGATCTGTAACTGACTCCTTAC
CTCATACCATATTTCAGTCGCGACATCCTCTCCAAACAATTAGACAATCT
CGTATTGAAAACATTGCTTCGATGTGCGTACTTTGGTGCCGCCTACCCGC
AAAGAACGATATCAGGGGCAGAGCGAAGGCACAATCAGCATACTCAAACG
ACAATAGCAGGCTATCGCAATGCACCCCTTCAGACATGGTGATTCGTGTC
GTGCACACACTAATTCACATATCTTTTTCTCCATTCTCCTCCCCCCTCCC
CCCTTCCTTCCTTGCCTCTTCCTCCTCTCCTCTTCTTGTTCTCCCCCCCT
CCCTGTTCCTTTCTCTTTCATCCTTCTTCGCCCTTTCCCTTCTGTCCTCT
TCCCCCTTCCCATCTTTCCCCTCATCTTTTCTTTTCTTTTTCTCCCTCTC
TTCTTTTTACCTTTCCTCCTCTCCTCTTTTTCCTTTTCCTCTTTTCCTCT
TCCCCCCGAAAACCCCCTCCTGCTCCCCTTTTCCCCTCCTCCCTGCCTCC
CCTCCCCCTGTGTCACCTCTTCTCCTCTGCATTATTCCTTTCGCTTTCTC
TGTTCTCCATCCCCCTTTCCCTTCTTCCCCTATCCTTCTGTTCTCGCTCC
TCTGCTCCTCCCCCTGTCCTCCTCATGCCCATTTCCACTCCTTTACTGCT
CCGTCATGTTTCCGCCTCGTCCTTTTTTCCGCTTCCGGCATTCTCCCTTT
TCTCTCTTTCCCCCTCCCGTTTCTACCGCTTCCTCGCCCTCCATGTACTC
CTCCTGTGTAGGCGGGGCGGTCTAGTTGTATCGATCTATGTTCTGCTCTT
GTGGGAGTCATGGAGCATTGAAGTGATGTGTGTCCAATAGCAAGTCGTCC
ACACTACTGCACGCTTACTCAACTGATGGCCACTCTCAGATAAAGCACTT
ATTTATCTTCCTCTCATGTACACCTTACCTTGCACCATCACAGCAAACAA
GACTTCTCCGTTACACAACATGCGTTGCGCGGTTTCTCTGCTTGCCCTCG
GCATCACCCTCGCCGTTACGGTGGCTGAGCCGGATGACCCGACCTTAATC
CTCACCTCCATCAAGG back to topprotein sequence of jgi.p|Nanoce1779_2|611054 >mRNA_10571-protein ID=mRNA_10571-protein|Name=jgi.p|Nanoce1779_2|611054|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MAFASQFLSVCTIEGQDRSVTDSLPHTIFQSRHPLQTIRQSRIENIASMC
VLWCRLPAKNDIRGRAKAQSAYSNDNSRLSQCTPSDMVIRVVHTLIHISF
SPFSSPLPPSFLASSSSPLLVLPPSLFLSLSSFFALSLLSSSPFPSFPSS
FLFFFSLSSFYLSSSPLFPFPLFLFPPKTPSCSPFPLLPASPPPVSPLLL
CIIPFAFSVLHPPFPSSPILLFSLLCSSPCPPHAHFHSFTAPSCFRLVLF
SASGILPFLSFPLPFLPLPRPPCTPPV* back to topmRNA from alignment at scaffold_53:107715..109230+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10571 ID=mRNA_10571|Name=jgi.p|Nanoce1779_2|611054|organism=Nannochloropsis oceanica|type=mRNA|length=1516bp|location=Sequence derived from alignment at scaffold_53:107715..109230+ (Nannochloropsis oceanica)
CGGGAAGAAACCACAAATCAAAAACGACAAACCAAAAACAAAATGTCGAA
AATCAGAAACGATACAAAACCAAAAGTAGTCAATCCCTCATCGTCGAACA
TGTATTTTTTTGTGTATGCAAGTTTGGTTTCCCTCCCTCTCTCTTGAGTT
TGCAAAAGTTTGTGGTTGGCCTTTTGGCTTCCAACGCCTTACCTTGCTAG
ACGCGACATACTAGGCGACGTCATGGGCCCGTGTAGCCGCCGCGCGCGCC
CGTCAGAGCGTGACCCCTATTCCTCTTTGGCCCTATTGCCTCTGAGACAC
CGAGCTTTGCATATACACGAGCCAGGAAGAGAGCTCTAACTGCCCCTTTT
GCCCCTGGCCACCAGCTGGCAGAGGCGATGGCATTTGCGTCTCAATTCTT
GTCTGTGTGCACAATCGAAGGTCAGGACAGATCTGTAACTGACTCCTTAC
CTCATACCATATTTCAGTCGCGACATCCTCTCCAAACAATTAGACAATCT
CGTATTGAAAACATTGCTTCGATGTGCGTACTTTGGTGCCGCCTACCCGC
AAAGAACGATATCAGGGGCAGAGCGAAGGCACAATCAGCATACTCAAACG
ACAATAGCAGGCTATCGCAATGCACCCCTTCAGACATGGTGATTCGTGTC
GTGCACACACTAATTCACATATCTTTTTCTCCATTCTCCTCCCCCCTCCC
CCCTTCCTTCCTTGCCTCTTCCTCCTCTCCTCTTCTTGTTCTCCCCCCCT
CCCTGTTCCTTTCTCTTTCATCCTTCTTCGCCCTTTCCCTTCTGTCCTCT
TCCCCCTTCCCATCTTTCCCCTCATCTTTTCTTTTCTTTTTCTCCCTCTC
TTCTTTTTACCTTTCCTCCTCTCCTCTTTTTCCTTTTCCTCTTTTCCTCT
TCCCCCCGAAAACCCCCTCCTGCTCCCCTTTTCCCCTCCTCCCTGCCTCC
CCTCCCCCTGTGTCACCTCTTCTCCTCTGCATTATTCCTTTCGCTTTCTC
TGTTCTCCATCCCCCTTTCCCTTCTTCCCCTATCCTTCTGTTCTCGCTCC
TCTGCTCCTCCCCCTGTCCTCCTCATGCCCATTTCCACTCCTTTACTGCT
CCGTCATGTTTCCGCCTCGTCCTTTTTTCCGCTTCCGGCATTCTCCCTTT
TCTCTCTTTCCCCCTCCCGTTTCTACCGCTTCCTCGCCCTCCATGTACTC
CTCCTGTGTAGGCGGGGCGGTCTAGTTGTATCGATCTATGTTCTGCTCTT
GTGGGAGTCATGGAGCATTGAAGTGATGTGTGTCCAATAGCAAGTCGTCC
ACACTACTGCACGCTTACTCAACTGATGGCCACTCTCAGATAAAGCACTT
ATTTATCTTCCTCTCATGTACACCTTACCTTGCACCATCACAGCAAACAA
GACTTCTCCGTTACACAACATGCGTTGCGCGGTTTCTCTGCTTGCCCTCG
GCATCACCCTCGCCGTTACGGTGGCTGAGCCGGATGACCCGACCTTAATC
CTCACCTCCATCAAGG back to topCoding sequence (CDS) from alignment at scaffold_53:107715..109230+ >mRNA_10571 ID=mRNA_10571|Name=jgi.p|Nanoce1779_2|611054|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_53:107715..109230+ (Nannochloropsis oceanica)
ATGGCATTTGCGTCTCAATTCTTGTCTGTGTGCACAATCGAAGGTCAGGA
CAGATCTGTAACTGACTCCTTACCTCATACCATATTTCAGTCGCGACATC
CTCTCCAAACAATTAGACAATCTCGTATTGAAAACATTGCTTCGATGTGC
GTACTTTGGTGCCGCCTACCCGCAAAGAACGATATCAGGGGCAGAGCGAA
GGCACAATCAGCATACTCAAACGACAATAGCAGGCTATCGCAATGCACCC
CTTCAGACATGGTGATTCGTGTCGTGCACACACTAATTCACATATCTTTT
TCTCCATTCTCCTCCCCCCTCCCCCCTTCCTTCCTTGCCTCTTCCTCCTC
TCCTCTTCTTGTTCTCCCCCCCTCCCTGTTCCTTTCTCTTTCATCCTTCT
TCGCCCTTTCCCTTCTGTCCTCTTCCCCCTTCCCATCTTTCCCCTCATCT
TTTCTTTTCTTTTTCTCCCTCTCTTCTTTTTACCTTTCCTCCTCTCCTCT
TTTTCCTTTTCCTCTTTTCCTCTTCCCCCCGAAAACCCCCTCCTGCTCCC
CTTTTCCCCTCCTCCCTGCCTCCCCTCCCCCTGTGTCACCTCTTCTCCTC
TGCATTATTCCTTTCGCTTTCTCTGTTCTCCATCCCCCTTTCCCTTCTTC
CCCTATCCTTCTGTTCTCGCTCCTCTGCTCCTCCCCCTGTCCTCCTCATG
CCCATTTCCACTCCTTTACTGCTCCGTCATGTTTCCGCCTCGTCCTTTTT
TCCGCTTCCGGCATTCTCCCTTTTCTCTCTTTCCCCCTCCCGTTTCTACC
GCTTCCTCGCCCTCCATGTACTCCTCCTGTGTAG back to top
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