jgi.p|Nanoce1779_2|611052, mRNA_10570 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611052
Unique NamemRNA_10570
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1659
Alignment locationscaffold_53:105774..107526 -

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Properties
Property NameValue
TranscriptId611138
TrackFilteredModels2
ProteinId611052
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_53supercontigscaffold_53:105774..107526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611052gene_10570Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611052mRNA_10570-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10570CDS_10570Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10570 ID=mRNA_10570|Name=jgi.p|Nanoce1779_2|611052|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp
ACAGGGCTTTTTGTTGAGCGTGTGGCGGACTTCTTTGTCATCGTCACCAT
CGCCGAATTCTAACGTTCCTGAGTCAAGTCCATGGGACCTCATCAGAATC
CTAACAGAGTGAAGCGCCCTCCGACGGAAGAAGAATCGATGGCGGACCGA
GACCGAAGAATTCAGTCTGGGGATCGAATTTCCAAAGCAGTGCGGGAGTA
TGCGTCCAGGCTACGATATGGTACTAACGTTGTGATCAAGGAACTGCATG
CGAAAGGAACTGCGGATGAATGCAAGACGCCACAAGCGAACAGTGTGTTG
GCTGAGAGATGGGTTGAATCTGGACTGGGTAGTTTCATCCAAGCCTGCAA
AAGAGGTGAATTCGTCGATCTAGGGATTTTCACCCGTGAGGCCCCCTTGG
ATGCTTTGCAACTGAGAAGGAAAGTGGCTTATATCTCGGCCATTTTTTTT
TTATACATGGTCACGCTAAGACGACACTTGTTGGCGCTTGAACCACATTT
GACAAGCACGACCTTGACACAAAAGGAAGGAGCCGAGGTGGCCAAGCGTT
TGTGTTCAACTTTGAGAAGTTGGGTGGAAGGAAAGAAAGACACGGAGTGG
CCTGAGGCAATAAGGACCATGAGGTTGAGGGCGAACGCGAAGGAACGAAA
GCCAGAGGCGGAGGAAAGAGTCCGATCAATACCGTTGCCTGGTGCAGGGC
TCATGACAATAATTGGGTTGCAGAAAGAGCTTCTTGTTGAGAACACGGAA
CGGGCCGCAGAAGACGAGGGCTCGGATCGGTCAGCTACGGATACTGATGA
AAATCATGATGAGGAGGAGAGTGCAGCTAATGAAGAAGAGGAGGAGGGAG
AGCAGGAAAAGGAGGTGGAACCAGACCGATTGACCGTGGAGTACTTGTCC
AGGTGTATCACTGCAAGCGAGAAGGCAGTGGTAAAAAATTCGAGAAAGAT
GTTGAAATATGATAAGACAGCGCTACGTTTGGTGTTGCGTTCTATGAAAC
AACTGGTCCGACACTATAAAGATACTATGACAGAGCTGTGTGACTGCAAT
AACATCGGGTATGGACTTTTTCAATCATTGAACAAGGCACACAAGGTGGA
TATTAAGAAAGAGGCAGCAAGAAAACGGAAAAAGAACACAGCAAGAAAAC
GAAGACAAGAAGTGGCAAGAAAGAAAAAGAGCAAGCAGCCCCAAAAATGA
GAGAACGCAGGAGGATGGAAAACGAAGGAGAGGAAGCATACGGGGAACAA
AATGAAATACGTCAATATAACGTGGGAGAACAAGAACAAGAAGAAGAAAG
AGATGATGAGCAAGAAGAAGAAGAAGATGATGAGCAAGAAGTGCAAGAGG
AAACACGACAATACGATGTGGCGGAGAAACTAGAACAAGAGAGTGAAGCA
GAAGAAGTACAACGACAGCAAGAAGCAGAAGACGATTATGACAGTGAATG
AGAAAAAGTAGCGAAAATGAAGAGACGTCCCAGAAAAATAGCAGAAAACA
CAGAAGCATCACAGCTGGAGACAATAGTGTCTGCGGGATCAGCGTTTTAC
CCTGGACCAATGGAGCTTGTGACACCACCTGCAGGACACACTGGCTTGAT
CCCCCCAAAAAAGAAAAGAAAGAAAACGTCGGGGTCGGAGAAAGTCAGGA
GAAAGCAGA
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protein sequence of jgi.p|Nanoce1779_2|611052

>mRNA_10570-protein ID=mRNA_10570-protein|Name=jgi.p|Nanoce1779_2|611052|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MGPHQNPNRVKRPPTEEESMADRDRRIQSGDRISKAVREYASRLRYGTNV
VIKELHAKGTADECKTPQANSVLAERWVESGLGSFIQACKRGEFVDLGIF
TREAPLDALQLRRKVAYISAIFFLYMVTLRRHLLALEPHLTSTTLTQKEG
AEVAKRLCSTLRSWVEGKKDTEWPEAIRTMRLRANAKERKPEAEERVRSI
PLPGAGLMTIIGLQKELLVENTERAAEDEGSDRSATDTDENHDEEESAAN
EEEEEGEQEKEVEPDRLTVEYLSRCITASEKAVVKNSRKMLKYDKTALRL
VLRSMKQLVRHYKDTMTELCDCNNIGYGLFQSLNKAHKVDIKKEAARKRK
KNTARKRRQEVARKKKSKQPQK*
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mRNA from alignment at scaffold_53:105774..107526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10570 ID=mRNA_10570|Name=jgi.p|Nanoce1779_2|611052|organism=Nannochloropsis oceanica|type=mRNA|length=1753bp|location=Sequence derived from alignment at scaffold_53:105774..107526- (Nannochloropsis oceanica)
ACAGGGCTTTTTGTTGAGCGTGTGGCGGACTTCTTTGTCATCGTCACCAT
CGCCGAATTCTAACGTTCCTGAGTCAAGTCCATGGGACCTCATCAGAATC
CTAACAGAGTGAAGCGCCCTCCGACGGAAGAAGAATCGATGGCGGACCGA
GACCGAAGAATTCAGTCTGGGGATCGAATTTCCAAAGCAGTGCGGGAGTA
TGCGTCCAGGCTACGATATGGTACTAACGTTGTGATCAAGGAACTGCATG
CGAAAGGAACTGCGGATGAATGCAAGGTACTGGTAGAGTGATATTGCGTC
GGGGGGATGGACAGCCATGTGCATCCGCACCCACCGCCTCGAACACTCAC
ATATATAAACACCCACAAAGACGCCACAAGCGAACAGTGTGTTGGCTGAG
AGATGGGTTGAATCTGGACTGGGTAGTTTCATCCAAGCCTGCAAAAGAGG
TGAATTCGTCGATCTAGGGATTTTCACCCGTGAGGCCCCCTTGGATGCTT
TGCAACTGAGAAGGAAAGTGGCTTATATCTCGGCCATTTTTTTTTTATAC
ATGGTCACGCTAAGACGACACTTGTTGGCGCTTGAACCACATTTGACAAG
CACGACCTTGACACAAAAGGAAGGAGCCGAGGTGGCCAAGCGTTTGTGTT
CAACTTTGAGAAGTTGGGTGGAAGGAAAGAAAGACACGGAGTGGCCTGAG
GCAATAAGGACCATGAGGTTGAGGGCGAACGCGAAGGAACGAAAGCCAGA
GGCGGAGGAAAGAGTCCGATCAATACCGTTGCCTGGTGCAGGGCTCATGA
CAATAATTGGGTTGCAGAAAGAGCTTCTTGTTGAGAACACGGAACGGGCC
GCAGAAGACGAGGGCTCGGATCGGTCAGCTACGGATACTGATGAAAATCA
TGATGAGGAGGAGAGTGCAGCTAATGAAGAAGAGGAGGAGGGAGAGCAGG
AAAAGGAGGTGGAACCAGACCGATTGACCGTGGAGTACTTGTCCAGGTGT
ATCACTGCAAGCGAGAAGGCAGTGGTAAAAAATTCGAGAAAGATGTTGAA
ATATGATAAGACAGCGCTACGTTTGGTGTTGCGTTCTATGAAACAACTGG
TCCGACACTATAAAGATACTATGACAGAGCTGTGTGACTGCAATAACATC
GGGTATGGACTTTTTCAATCATTGAACAAGGCACACAAGGTGGATATTAA
GAAAGAGGCAGCAAGAAAACGGAAAAAGAACACAGCAAGAAAACGAAGAC
AAGAAGTGGCAAGAAAGAAAAAGAGCAAGCAGCCCCAAAAATGAGAGAAC
GCAGGAGGATGGAAAACGAAGGAGAGGAAGCATACGGGGAACAAAATGAA
ATACGTCAATATAACGTGGGAGAACAAGAACAAGAAGAAGAAAGAGATGA
TGAGCAAGAAGAAGAAGAAGATGATGAGCAAGAAGTGCAAGAGGAAACAC
GACAATACGATGTGGCGGAGAAACTAGAACAAGAGAGTGAAGCAGAAGAA
GTACAACGACAGCAAGAAGCAGAAGACGATTATGACAGTGAATGAGAAAA
AGTAGCGAAAATGAAGAGACGTCCCAGAAAAATAGCAGAAAACACAGAAG
CATCACAGCTGGAGACAATAGTGTCTGCGGGATCAGCGTTTTACCCTGGA
CCAATGGAGCTTGTGACACCACCTGCAGGACACACTGGCTTGATCCCCCC
AAAAAAGAAAAGAAAGAAAACGTCGGGGTCGGAGAAAGTCAGGAGAAAGC
AGA
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Coding sequence (CDS) from alignment at scaffold_53:105774..107526-

>mRNA_10570 ID=mRNA_10570|Name=jgi.p|Nanoce1779_2|611052|organism=Nannochloropsis oceanica|type=CDS|length=2238bp|location=Sequence derived from alignment at scaffold_53:105774..107526- (Nannochloropsis oceanica)
ACGCCACAAGCGAACAGTGTGTTGGCTGAGAGATGGGTTGAATCTGGACT
GGGTAGTTTCATCCAAGCCTGCAAAAGAGGTGAATTCGTCGATCTAGGGA
TTTTCACCCGTGAGGCCCCCTTGGATGCTTTGCAACTGAGAAGGAAAGTG
GCTTATATCTCGGCCATTTTTTTTTTATACATGGTCACGCTAAGACGACA
CTTGTTGGCGCTTGAACCACATTTGACAAGCACGACCTTGACACAAAAGG
AAGGAGCCGAGGTGGCCAAGCGTTTGTGTTCAACTTTGAGAAGTTGGGTG
GAAGGAAAGAAAGACACGGAGTGGCCTGAGGCAATAAGGACCATGAGGTT
GAGGGCGAACGCGAAGGAACGAAAGCCAGAGGCGGAGGAAAGAGTCCGAT
CAATACCGTTGCCTGGTGCAGGGCTCATGACAATAATTGGGTTGCAGAAA
GAGCTTCTTGTTGAGAACACGGAACGGGCCGCAGAAGACGAGGGCTCGGA
TCGGTCAGCTACGGATACTGATGAAAATCATGATGAGGAGGAGAGTGCAG
CTAATGAAGAAGAGGAGGAGGGAGAGCAGGAAAAGGAGGTGGAACCAGAC
CGATTGACCGTGGAGTACTTGTCCAGGTGTATCACTGCAAGCGAGAAGGC
AGTGGTAAAAAATTCGAGAAAGATGTTGAAATATGATAAGACAGCGCTAC
GTTTGGTGTTGCGTTCTATGAAACAACTGGTCCGACACTATAAAGATACT
ATGACAGAGCTGTGTGACTGCAATAACATCGGGTATGGACTTTTTCAATC
ATTGAACAAGGCACACAAGGTGGATATTAAGAAAGAGGCAGCAAGAAAAC
GGAAAAAGAACACAGCAAGAAAACGAAGACAAGAAGTGGCAAGAAAGAAA
AAGAGCAAGCAGCCCCAAAAATGAATGGGACCTCATCAGAATCCTAACAG
AGTGAAGCGCCCTCCGACGGAAGAAGAATCGATGGCGGACCGAGACCGAA
GAATTCAGTCTGGGGATCGAATTTCCAAAGCAGTGCGGGAGTATGCGTCC
AGGCTACGATATGGTACTAACGTTGTGATCAAGGAACTGCATGCGAAAGG
AACTGCGGATGAATGCAAGACGCCACAAGCGAACAGTGTGTTGGCTGAGA
GATGGGTTGAATCTGGACTGGGTAGTTTCATCCAAGCCTGCAAAAGAGGT
GAATTCGTCGATCTAGGGATTTTCACCCGTGAGGCCCCCTTGGATGCTTT
GCAACTGAGAAGGAAAGTGGCTTATATCTCGGCCATTTTTTTTTTATACA
TGGTCACGCTAAGACGACACTTGTTGGCGCTTGAACCACATTTGACAAGC
ACGACCTTGACACAAAAGGAAGGAGCCGAGGTGGCCAAGCGTTTGTGTTC
AACTTTGAGAAGTTGGGTGGAAGGAAAGAAAGACACGGAGTGGCCTGAGG
CAATAAGGACCATGAGGTTGAGGGCGAACGCGAAGGAACGAAAGCCAGAG
GCGGAGGAAAGAGTCCGATCAATACCGTTGCCTGGTGCAGGGCTCATGAC
AATAATTGGGTTGCAGAAAGAGCTTCTTGTTGAGAACACGGAACGGGCCG
CAGAAGACGAGGGCTCGGATCGGTCAGCTACGGATACTGATGAAAATCAT
GATGAGGAGGAGAGTGCAGCTAATGAAGAAGAGGAGGAGGGAGAGCAGGA
AAAGGAGGTGGAACCAGACCGATTGACCGTGGAGTACTTGTCCAGGTGTA
TCACTGCAAGCGAGAAGGCAGTGGTAAAAAATTCGAGAAAGATGTTGAAA
TATGATAAGACAGCGCTACGTTTGGTGTTGCGTTCTATGAAACAACTGGT
CCGACACTATAAAGATACTATGACAGAGCTGTGTGACTGCAATAACATCG
GGTATGGACTTTTTCAATCATTGAACAAGGCACACAAGGTGGATATTAAG
AAAGAGGCAGCAAGAAAACGGAAAAAGAACACAGCAAGAAAACGAAGACA
AGAAGTGGCAAGAAAGAAAAAGAGCAAGCAGCCCCAAAAATGAATGGGAC
CTCATCAGAATCCTAACAGAGTGAAGCGCCCTCCGACGGAAGAAGAATCG
ATGGCGGACCGAGACCGAAGAATTCAGTCTGGGGATCGAATTTCCAAAGC
AGTGCGGGAGTATGCGTCCAGGCTACGATATGGTACTAACGTTGTGATCA
AGGAACTGCATGCGAAAGGAACTGCGGATGAATGCAAG
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Synonyms
Publications