scaffold_104, scaffold_104 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_104
Unique Name	scaffold_104
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	42318
Alignment location	jgi.p\|Nanoce1779_2\|29390:1..1418 -
Alignment location	jgi.p\|Nanoce1779_2\|29390:1..1418 -
Alignment location	CDS_11746:726..1000 -
Alignment location	CDS_11746:468..591 -
Alignment location	CDS_11746:34..366 -
Alignment location	jgi.p\|Nanoce1779_2\|29411:4101..4513 -
Alignment location	jgi.p\|Nanoce1779_2\|29411:4101..4513 -
Alignment location	CDS_11748:4168..4389 -
Alignment location	jgi.p\|Nanoce1779_2\|29491:7294..9564 -
Alignment location	jgi.p\|Nanoce1779_2\|29491:7294..9564 -
Alignment location	CDS_11749:9240..9242 -
Alignment location	CDS_11749:8459..8538 -
Alignment location	CDS_11749:8302..8356 -
Alignment location	CDS_11749:8071..8134 -
Alignment location	CDS_11749:7841..7905 -
Alignment location	CDS_11749:7600..7689 -
Alignment location	CDS_11749:7349..7465 -
Alignment location	jgi.p\|Nanoce1779_2\|29987:38027..39535 -
Alignment location	jgi.p\|Nanoce1779_2\|29987:38027..39535 -
Alignment location	CDS_11756:39096..39417 -
Alignment location	CDS_11756:38853..38899 -
Alignment location	CDS_11756:38704..38772 -
Alignment location	CDS_11756:38323..38511 -
Alignment location	jgi.p\|Nanoce1779_2\|615584:1437..5057 +
Alignment location	jgi.p\|Nanoce1779_2\|615584:1437..5057 +
Alignment location	CDS_11747:1467..1895 +
Alignment location	CDS_11747:2127..2311 +
Alignment location	CDS_11747:2508..2585 +
Alignment location	CDS_11747:2741..3038 +
Alignment location	CDS_11747:3190..3266 +
Alignment location	CDS_11747:3468..3618 +
Alignment location	CDS_11747:3761..3857 +
Alignment location	CDS_11747:4003..4121 +
Alignment location	jgi.p\|Nanoce1779_2\|615593:10473..12770 -
Alignment location	jgi.p\|Nanoce1779_2\|615593:10473..12770 -
Alignment location	CDS_11750:12589..12663 -
Alignment location	CDS_11750:12259..12351 -
Alignment location	CDS_11750:12020..12106 -
Alignment location	CDS_11750:11590..11700 -
Alignment location	CDS_11750:11276..11363 -
Alignment location	CDS_11750:10722..11074 -
Alignment location	jgi.p\|Nanoce1779_2\|615602:20960..22978 -
Alignment location	jgi.p\|Nanoce1779_2\|615602:20960..22978 -
Alignment location	CDS_11752:22823..22954 -
Alignment location	CDS_11752:22404..22735 -
Alignment location	CDS_11752:22168..22243 -
Alignment location	CDS_11752:21859..22009 -
Alignment location	CDS_11752:21452..21559 -
Alignment location	CDS_11752:21014..21264 -
Alignment location	jgi.p\|Nanoce1779_2\|615607:25902..27605 +
Alignment location	jgi.p\|Nanoce1779_2\|615607:25902..27605 +
Alignment location	CDS_11753:25916..25997 +
Alignment location	CDS_11753:26265..26428 +
Alignment location	CDS_11753:26692..26784 +
Alignment location	CDS_11753:26998..27150 +
Alignment location	CDS_11753:27351..27497 +
Alignment location	jgi.p\|Nanoce1779_2\|615612:27811..30588 -
Alignment location	jgi.p\|Nanoce1779_2\|615612:27811..30588 -
Alignment location	CDS_11754:30353..30433 -
Alignment location	CDS_11754:30032..30166 -
Alignment location	CDS_11754:29693..29782 -
Alignment location	CDS_11754:29360..29520 -
Alignment location	CDS_11754:29123..29194 -
Alignment location	CDS_11754:28774..28885 -
Alignment location	CDS_11754:28461..28572 -
Alignment location	CDS_11754:28186..28274 -
Alignment location	jgi.p\|Nanoce1779_2\|615622:31453..38397 -
Alignment location	jgi.p\|Nanoce1779_2\|615622:31453..38397 -
Alignment location	CDS_11755:37598..37709 -
Alignment location	CDS_11755:37308..37439 -
Alignment location	CDS_11755:36972..37051 -
Alignment location	CDS_11755:36732..36806 -
Alignment location	CDS_11755:36367..36507 -
Alignment location	CDS_11755:36062..36164 -
Alignment location	CDS_11755:35809..35919 -
Alignment location	CDS_11755:35549..35686 -
Alignment location	CDS_11755:35241..35349 -
Alignment location	CDS_11755:34895..34994 -
Alignment location	CDS_11755:34490..34562 -
Alignment location	CDS_11755:34218..34312 -
Alignment location	CDS_11755:33894..33996 -
Alignment location	CDS_11755:33573..33684 -
Alignment location	CDS_11755:33340..33409 -
Alignment location	CDS_11755:33049..33159 -
Alignment location	CDS_11755:32629..32790 -
Alignment location	CDS_11755:32210..32383 -
Alignment location	jgi.p\|Nanoce1779_2\|615637:40174..41641 -
Alignment location	jgi.p\|Nanoce1779_2\|615637:40174..41641 -
Alignment location	CDS_11757:41530..41621 -
Alignment location	CDS_11757:41204..41265 -
Alignment location	CDS_11757:40957..41063 -
Alignment location	jgi.p\|Nanoce1779_2\|634641:17948..19553 -
Alignment location	jgi.p\|Nanoce1779_2\|634641:17948..19553 -
Alignment location	CDS_11751:19318..19541 -
Alignment location	CDS_11751:19062..19227 -
Alignment location	CDS_11751:18528..18787 -
Alignment location	CDS_11751:17949..18186 -
Alignment location	jgi.p\|Nanoce1779_2\|29390:34..1000 -
Alignment location	jgi.p\|Nanoce1779_2\|29411:4168..4389 -
Alignment location	jgi.p\|Nanoce1779_2\|29491:7349..9242 -
Alignment location	jgi.p\|Nanoce1779_2\|29987:38323..39417 -
Alignment location	jgi.p\|Nanoce1779_2\|615584:1467..4121 +
Alignment location	jgi.p\|Nanoce1779_2\|615593:10722..12663 -
Alignment location	jgi.p\|Nanoce1779_2\|615602:21014..22954 -
Alignment location	jgi.p\|Nanoce1779_2\|615607:25916..27497 +
Alignment location	jgi.p\|Nanoce1779_2\|615612:28186..30433 -
Alignment location	jgi.p\|Nanoce1779_2\|615622:32210..37709 -
Alignment location	jgi.p\|Nanoce1779_2\|615637:40957..41621 -
Alignment location	jgi.p\|Nanoce1779_2\|634641:17949..19541 -
Alignment location	ncniL041:2..41641 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|29390	gene	jgi.p\|Nanoce1779_2\|29390:1..1418 -
jgi.p\|Nanoce1779_2\|29390	mRNA	jgi.p\|Nanoce1779_2\|29390:1..1418 -
CDS_11746	CDS	CDS_11746:726..1000 -
CDS_11746	CDS	CDS_11746:468..591 -
CDS_11746	CDS	CDS_11746:34..366 -
jgi.p\|Nanoce1779_2\|29411	gene	jgi.p\|Nanoce1779_2\|29411:4101..4513 -
jgi.p\|Nanoce1779_2\|29411	mRNA	jgi.p\|Nanoce1779_2\|29411:4101..4513 -
CDS_11748	CDS	CDS_11748:4168..4389 -
jgi.p\|Nanoce1779_2\|29491	gene	jgi.p\|Nanoce1779_2\|29491:7294..9564 -
jgi.p\|Nanoce1779_2\|29491	mRNA	jgi.p\|Nanoce1779_2\|29491:7294..9564 -
CDS_11749	CDS	CDS_11749:9240..9242 -
CDS_11749	CDS	CDS_11749:8459..8538 -
CDS_11749	CDS	CDS_11749:8302..8356 -
CDS_11749	CDS	CDS_11749:8071..8134 -
CDS_11749	CDS	CDS_11749:7841..7905 -
CDS_11749	CDS	CDS_11749:7600..7689 -
CDS_11749	CDS	CDS_11749:7349..7465 -
jgi.p\|Nanoce1779_2\|29987	gene	jgi.p\|Nanoce1779_2\|29987:38027..39535 -
jgi.p\|Nanoce1779_2\|29987	mRNA	jgi.p\|Nanoce1779_2\|29987:38027..39535 -
CDS_11756	CDS	CDS_11756:39096..39417 -
CDS_11756	CDS	CDS_11756:38853..38899 -
CDS_11756	CDS	CDS_11756:38704..38772 -
CDS_11756	CDS	CDS_11756:38323..38511 -
jgi.p\|Nanoce1779_2\|615584	gene	jgi.p\|Nanoce1779_2\|615584:1437..5057 +
jgi.p\|Nanoce1779_2\|615584	mRNA	jgi.p\|Nanoce1779_2\|615584:1437..5057 +
CDS_11747	CDS	CDS_11747:1467..1895 +
CDS_11747	CDS	CDS_11747:2127..2311 +
CDS_11747	CDS	CDS_11747:2508..2585 +
CDS_11747	CDS	CDS_11747:2741..3038 +
CDS_11747	CDS	CDS_11747:3190..3266 +
CDS_11747	CDS	CDS_11747:3468..3618 +
CDS_11747	CDS	CDS_11747:3761..3857 +
CDS_11747	CDS	CDS_11747:4003..4121 +
jgi.p\|Nanoce1779_2\|615593	gene	jgi.p\|Nanoce1779_2\|615593:10473..12770 -
jgi.p\|Nanoce1779_2\|615593	mRNA	jgi.p\|Nanoce1779_2\|615593:10473..12770 -
CDS_11750	CDS	CDS_11750:12589..12663 -
CDS_11750	CDS	CDS_11750:12259..12351 -
CDS_11750	CDS	CDS_11750:12020..12106 -
CDS_11750	CDS	CDS_11750:11590..11700 -
CDS_11750	CDS	CDS_11750:11276..11363 -
CDS_11750	CDS	CDS_11750:10722..11074 -
jgi.p\|Nanoce1779_2\|615602	gene	jgi.p\|Nanoce1779_2\|615602:20960..22978 -
jgi.p\|Nanoce1779_2\|615602	mRNA	jgi.p\|Nanoce1779_2\|615602:20960..22978 -
CDS_11752	CDS	CDS_11752:22823..22954 -
CDS_11752	CDS	CDS_11752:22404..22735 -
CDS_11752	CDS	CDS_11752:22168..22243 -
CDS_11752	CDS	CDS_11752:21859..22009 -
CDS_11752	CDS	CDS_11752:21452..21559 -
CDS_11752	CDS	CDS_11752:21014..21264 -
jgi.p\|Nanoce1779_2\|615607	gene	jgi.p\|Nanoce1779_2\|615607:25902..27605 +
jgi.p\|Nanoce1779_2\|615607	mRNA	jgi.p\|Nanoce1779_2\|615607:25902..27605 +
CDS_11753	CDS	CDS_11753:25916..25997 +
CDS_11753	CDS	CDS_11753:26265..26428 +
CDS_11753	CDS	CDS_11753:26692..26784 +
CDS_11753	CDS	CDS_11753:26998..27150 +
CDS_11753	CDS	CDS_11753:27351..27497 +
jgi.p\|Nanoce1779_2\|615612	gene	jgi.p\|Nanoce1779_2\|615612:27811..30588 -
jgi.p\|Nanoce1779_2\|615612	mRNA	jgi.p\|Nanoce1779_2\|615612:27811..30588 -
CDS_11754	CDS	CDS_11754:30353..30433 -
CDS_11754	CDS	CDS_11754:30032..30166 -
CDS_11754	CDS	CDS_11754:29693..29782 -
CDS_11754	CDS	CDS_11754:29360..29520 -
CDS_11754	CDS	CDS_11754:29123..29194 -
CDS_11754	CDS	CDS_11754:28774..28885 -
CDS_11754	CDS	CDS_11754:28461..28572 -
CDS_11754	CDS	CDS_11754:28186..28274 -
jgi.p\|Nanoce1779_2\|615622	gene	jgi.p\|Nanoce1779_2\|615622:31453..38397 -
jgi.p\|Nanoce1779_2\|615622	mRNA	jgi.p\|Nanoce1779_2\|615622:31453..38397 -
CDS_11755	CDS	CDS_11755:37598..37709 -
CDS_11755	CDS	CDS_11755:37308..37439 -
CDS_11755	CDS	CDS_11755:36972..37051 -
CDS_11755	CDS	CDS_11755:36732..36806 -
CDS_11755	CDS	CDS_11755:36367..36507 -
CDS_11755	CDS	CDS_11755:36062..36164 -
CDS_11755	CDS	CDS_11755:35809..35919 -
CDS_11755	CDS	CDS_11755:35549..35686 -
CDS_11755	CDS	CDS_11755:35241..35349 -
CDS_11755	CDS	CDS_11755:34895..34994 -
CDS_11755	CDS	CDS_11755:34490..34562 -
CDS_11755	CDS	CDS_11755:34218..34312 -
CDS_11755	CDS	CDS_11755:33894..33996 -
CDS_11755	CDS	CDS_11755:33573..33684 -
CDS_11755	CDS	CDS_11755:33340..33409 -
CDS_11755	CDS	CDS_11755:33049..33159 -
CDS_11755	CDS	CDS_11755:32629..32790 -
CDS_11755	CDS	CDS_11755:32210..32383 -
jgi.p\|Nanoce1779_2\|615637	gene	jgi.p\|Nanoce1779_2\|615637:40174..41641 -
jgi.p\|Nanoce1779_2\|615637	mRNA	jgi.p\|Nanoce1779_2\|615637:40174..41641 -
CDS_11757	CDS	CDS_11757:41530..41621 -
CDS_11757	CDS	CDS_11757:41204..41265 -
CDS_11757	CDS	CDS_11757:40957..41063 -
jgi.p\|Nanoce1779_2\|634641	gene	jgi.p\|Nanoce1779_2\|634641:17948..19553 -
jgi.p\|Nanoce1779_2\|634641	mRNA	jgi.p\|Nanoce1779_2\|634641:17948..19553 -
CDS_11751	CDS	CDS_11751:19318..19541 -
CDS_11751	CDS	CDS_11751:19062..19227 -
CDS_11751	CDS	CDS_11751:18528..18787 -
CDS_11751	CDS	CDS_11751:17949..18186 -
jgi.p\|Nanoce1779_2\|29390	polypeptide	jgi.p\|Nanoce1779_2\|29390:34..1000 -
jgi.p\|Nanoce1779_2\|29411	polypeptide	jgi.p\|Nanoce1779_2\|29411:4168..4389 -
jgi.p\|Nanoce1779_2\|29491	polypeptide	jgi.p\|Nanoce1779_2\|29491:7349..9242 -
jgi.p\|Nanoce1779_2\|29987	polypeptide	jgi.p\|Nanoce1779_2\|29987:38323..39417 -
jgi.p\|Nanoce1779_2\|615584	polypeptide	jgi.p\|Nanoce1779_2\|615584:1467..4121 +
jgi.p\|Nanoce1779_2\|615593	polypeptide	jgi.p\|Nanoce1779_2\|615593:10722..12663 -
jgi.p\|Nanoce1779_2\|615602	polypeptide	jgi.p\|Nanoce1779_2\|615602:21014..22954 -
jgi.p\|Nanoce1779_2\|615607	polypeptide	jgi.p\|Nanoce1779_2\|615607:25916..27497 +
jgi.p\|Nanoce1779_2\|615612	polypeptide	jgi.p\|Nanoce1779_2\|615612:28186..30433 -
jgi.p\|Nanoce1779_2\|615622	polypeptide	jgi.p\|Nanoce1779_2\|615622:32210..37709 -
jgi.p\|Nanoce1779_2\|615637	polypeptide	jgi.p\|Nanoce1779_2\|615637:40957..41621 -
jgi.p\|Nanoce1779_2\|634641	polypeptide	jgi.p\|Nanoce1779_2\|634641:17949..19541 -
ncniL041	syntenic_region	ncniL041:2..41641 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications