jgi.p|Nanoce1779_2|615637, mRNA_11757 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|615637
Unique NamemRNA_11757
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1064
Alignment locationscaffold_104:40174..41641 -

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Properties
Property NameValue
TranscriptId615723
TrackFilteredModels2
ProteinId615637
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_104supercontigscaffold_104:40174..41641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615637gene_11757Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615637mRNA_11757-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11757CDS_11757Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11757 ID=mRNA_11757|Name=jgi.p|Nanoce1779_2|615637|organism=Nannochloropsis oceanica|type=mRNA|length=1064bp
ACAGAGTATACAGTCGTCAGATGACACAAGACGCGGTTACAACTCCCAGC
ATGGCGGAAAAGGTGCCAAGCGAGCTGTATATCTCCGAGAAGTGGGACAG
GTGCTTGGAGCGGAGCGTGGTGAATATTGCAAGCGGTGCAGTTCTTGGTC
TCTTCTCGGGCTTCGTCCTCGCCCGAACAGGCCATGGTCGAAGCCTGGTG
GCGGCGATGGGGTTGGGGTGTGGGGTGGGCGCCTCCTGGGTTCGGTGTGC
AAACGACTTTGAGGACGAGAAGAGAAAGTGAGGGGAGGAAGTGCATGGGA
TCTATACATAGAAGATTGCAAGAATAGAGGGCGAAGAAGGGAAGAGGGGG
AGAGGCGGTGGAGGAAAGGGAGGGATGACGAGAAGATGTACTTGTTGAGG
TAAGGGAGGCGAAGTTGGGGGAGGAGGGAGTAGAGGGCGGTTGTCGCTAT
TCCTCTTCTGTGTATGAGCATGCAAGTGCTGTTGAATGTTAAACGAGACA
GATGGGTTCTGGGAGGAGGGCATAACCGCTCAGGCAAAAGGACGAGAGTG
GTGAGAAAGCGACTTACCCATCCTTTTTCTGTACGACGCGCACCACGCCG
AGCGTGAGCACACCCAACGGTGAACAAAGGTGCAGGACCGTTTGGAACGA
CCTTTATTGAAGAGAAGATTGATTGGAAGAAACACGAGACATGCATTTTT
TTGCATCTTCCGCACTTCTCTCCGAGCTCTATTCGTTTCTTCACCCAACG
CATAGAAAAATAGAGGCAACAAAACCACTCATTATGCCCATCATCATACA
ACTGGCACACTAGCGAAACACAAGCTTGCGAAACTTTATATGAATACTCT
TTAGCGTTGTGGCTTTTATAACGTGGTGTGGGTTGGTTGCTTTTTTTAAA
GTCTTGGCTTGAGTGTCCAACCAAAATCACTGCACTGGTTGAAACCTGGT
CAGTGGGACTGGGTGAGGCGGTCGCGGAGGCGGAGGCGGAGGAGGAGGAG
GAGGTCACGTGCGGGCCATCCGAGGACTGTACAGGTGTGACATCTGTGAA
CAATTCGTGTCCCG
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protein sequence of jgi.p|Nanoce1779_2|615637

>mRNA_11757-protein ID=mRNA_11757-protein|Name=jgi.p|Nanoce1779_2|615637|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MTQDAVTTPSMAEKVPSELYISEKWDRCLERSVVNIASGAVLGLFSGFVL
ARTGHGRSLVAAMGLGCGVGASWVRCANDFEDEKRK*
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mRNA from alignment at scaffold_104:40174..41641-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11757 ID=mRNA_11757|Name=jgi.p|Nanoce1779_2|615637|organism=Nannochloropsis oceanica|type=mRNA|length=1468bp|location=Sequence derived from alignment at scaffold_104:40174..41641- (Nannochloropsis oceanica)
ACAGAGTATACAGTCGTCAGATGACACAAGACGCGGTTACAACTCCCAGC
ATGGCGGAAAAGGTGCCAAGCGAGCTGTATATCTCCGAGAAGTGGGACAG
GTGCTTGGAGCGGTAAGAAAAAAATGAGAGTAGCGGCTGAGCTGCAGTAA
CGTTCTTGTGGCGCTGGACAGTGAAGCACGAGGCGTAAGCAATGACGATA
GAGAGAGAAATACCGAGTCCGGGAAAGGGAGAAGTGAAATTGGTTTGAGA
AGGGCCGCCAGATGTCTTGCTGCTTCGTCTGAGGTGTGTCCCGCCTGACG
CGTAGGGGGACGAAAAACGCACAGCTTTACAAGCATCTTTCGTGACTCAT
CATTCTCTCCCTTCCCTCAAAAAAAGGAGCGTGGTGAATATTGCAAGCGG
TGCAGTTCTTGGTCTCTTCTCGGGCTTCGTCCTCGCCCGTACGTCCCCCC
CCCCCACCCCATCCTTTCTTGCTCTCCCATGCTTCCTCCCTCCCTTGCCC
AACCATTGACTCACTCTCCTCCAATCAACTAATCCTCTATGACTCTTTTT
GAATTACTATGCTTCAACCCGCGCACAGGAACAGGCCATGGTCGAAGCCT
GGTGGCGGCGATGGGGTTGGGGTGTGGGGTGGGCGCCTCCTGGGTTCGGT
GTGCAAACGACTTTGAGGACGAGAAGAGAAAGTGAGGGGAGGAAGTGCAT
GGGATCTATACATAGAAGATTGCAAGAATAGAGGGCGAAGAAGGGAAGAG
GGGGAGAGGCGGTGGAGGAAAGGGAGGGATGACGAGAAGATGTACTTGTT
GAGGTAAGGGAGGCGAAGTTGGGGGAGGAGGGAGTAGAGGGCGGTTGTCG
CTATTCCTCTTCTGTGTATGAGCATGCAAGTGCTGTTGAATGTTAAACGA
GACAGATGGGTTCTGGGAGGAGGGCATAACCGCTCAGGCAAAAGGACGAG
AGTGGTGAGAAAGCGACTTACCCATCCTTTTTCTGTACGACGCGCACCAC
GCCGAGCGTGAGCACACCCAACGGTGAACAAAGGTGCAGGACCGTTTGGA
ACGACCTTTATTGAAGAGAAGATTGATTGGAAGAAACACGAGACATGCAT
TTTTTTGCATCTTCCGCACTTCTCTCCGAGCTCTATTCGTTTCTTCACCC
AACGCATAGAAAAATAGAGGCAACAAAACCACTCATTATGCCCATCATCA
TACAACTGGCACACTAGCGAAACACAAGCTTGCGAAACTTTATATGAATA
CTCTTTAGCGTTGTGGCTTTTATAACGTGGTGTGGGTTGGTTGCTTTTTT
TAAAGTCTTGGCTTGAGTGTCCAACCAAAATCACTGCACTGGTTGAAACC
TGGTCAGTGGGACTGGGTGAGGCGGTCGCGGAGGCGGAGGCGGAGGAGGA
GGAGGAGGTCACGTGCGGGCCATCCGAGGACTGTACAGGTGTGACATCTG
TGAACAATTCGTGTCCCG
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Coding sequence (CDS) from alignment at scaffold_104:40174..41641-

>mRNA_11757 ID=mRNA_11757|Name=jgi.p|Nanoce1779_2|615637|organism=Nannochloropsis oceanica|type=CDS|length=783bp|location=Sequence derived from alignment at scaffold_104:40174..41641- (Nannochloropsis oceanica)
GAACAGGCCATGGTCGAAGCCTGGTGGCGGCGATGGGGTTGGGGTGTGGG
GTGGGCGCCTCCTGGGTTCGGTGTGCAAACGACTTTGAGGACGAGAAGAG
AAAGTGAGAGCGTGGTGAATATTGCAAGCGGTGCAGTTCTTGGTCTCTTC
TCGGGCTTCGTCCTCGCCCATGACACAAGACGCGGTTACAACTCCCAGCA
TGGCGGAAAAGGTGCCAAGCGAGCTGTATATCTCCGAGAAGTGGGACAGG
TGCTTGGAGCGGAACAGGCCATGGTCGAAGCCTGGTGGCGGCGATGGGGT
TGGGGTGTGGGGTGGGCGCCTCCTGGGTTCGGTGTGCAAACGACTTTGAG
GACGAGAAGAGAAAGTGAGAGCGTGGTGAATATTGCAAGCGGTGCAGTTC
TTGGTCTCTTCTCGGGCTTCGTCCTCGCCCATGACACAAGACGCGGTTAC
AACTCCCAGCATGGCGGAAAAGGTGCCAAGCGAGCTGTATATCTCCGAGA
AGTGGGACAGGTGCTTGGAGCGGAACAGGCCATGGTCGAAGCCTGGTGGC
GGCGATGGGGTTGGGGTGTGGGGTGGGCGCCTCCTGGGTTCGGTGTGCAA
ACGACTTTGAGGACGAGAAGAGAAAGTGAGAGCGTGGTGAATATTGCAAG
CGGTGCAGTTCTTGGTCTCTTCTCGGGCTTCGTCCTCGCCCATGACACAA
GACGCGGTTACAACTCCCAGCATGGCGGAAAAGGTGCCAAGCGAGCTGTA
TATCTCCGAGAAGTGGGACAGGTGCTTGGAGCG
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Synonyms
Publications