jgi.p|Nanoce1779_2|29390, mRNA_11746 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|29390
Unique NamemRNA_11746
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1183
Alignment locationscaffold_104:1..1418 -

Link to JBrowse

Properties
Property NameValue
TranscriptId29476
TrackFilteredModels2
ProteinId29390
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_104supercontigscaffold_104:1..1418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|29390gene_11746Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|29390mRNA_11746-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11746CDS_11746Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11746 ID=mRNA_11746|Name=jgi.p|Nanoce1779_2|29390|organism=Nannochloropsis oceanica|type=mRNA|length=1183bp
CGTGTGAGTGCCGTGTGGATGTGTCAAGCGGAAGAGGGGATGTGTGGTAG
GTGGCAGACGAACGAAGCGACCAAGTGAAGTAAATACGGCGAAAGACCCA
TCGCCAATACGCCACCATCATGGCAACCTTCACAAGGTAGGGGCCTACTG
CTCTGTCTGCGCCAGTGACACACAGTGTATGTAGGCGTAATTGTCTAAGC
TACGCGGGGCAACCTTAGCTTGTTTCTCTTCCTCTGGCCGAGAACACCGT
TGCAACTGAAGCCTTCAAGGCGTGGGTGCTCTCGTGCATCCTCGGGGAGG
GCTTTCTGGCGCGTTCCGAAGCATATCGACACTGTACCGTGCAGATATTG
CATCCAGATGATCACATTTTATGCATTTCATCCATCTCAGACTTGTGCAG
CTTTAGTTGTCAAGTTCTATGCCCTTCCGGGCATCCAGGCGACCTCCTCC
CCATCCTCTTACCCACTTCCCACATCACTATATACCCGCAGGCACGAATC
CCGTTCCTCAGGCAAATAAGGAAACGGTTGCTGCTATGACCGGGGCAGAG
GAAGGTACGTGCAAATGCGGATTATGCCGCTCGTATCAACTCCTCTCCAA
GAACCTCCCCACCATCCCCACAGGAGTCCGATCCCACGCCCTATTCGGCG
GTGCCATCACATTCACCCTGCCCGCCTCGTTTGCAAACGTCAGCGAGATT
CGCCAGGTACCAGACAATCAAGAAGTCTTTGTAGACCAAAGTTCGGACGC
GTCACTTATCCTAGAATTGCTGGAGCTGGAGCGGGGCAAGGAGGGCCTTG
AGGTATGTGTCTGTAAGGCCGCAAAATACTTTTTCTGTGACCTTGCCGAG
CACAACGAAGCCCAGGCCGCGAACATTCAGTTTCAAGCGGACATGAGCAA
AACCGGGGTCGTGCCGCATTTAGATGCCTACCCAACCTACTGTCTTATCG
GCACACAAAGTATCTCCAAGTTCCACACGCCCAGTGCGGCACATCAATCT
GTGCGTATCTATCTTGTCAATGTGCGCTTGCAACAGACGGGCACGGACCT
CGTTCTAACCCTCAACTTGCCCCCATCGGCACAAGCACCCGCCGCCGCCG
AATTTAGCCAGACCTTGTTCATCCAGGTAGGTAAGTCTCTTGAGAGATGA
AGGAATCGGGAGCGACATATCTGGTGGGCATAT
back to top

protein sequence of jgi.p|Nanoce1779_2|29390

>mRNA_11746-protein ID=mRNA_11746-protein|Name=jgi.p|Nanoce1779_2|29390|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MPFRASRRPPPHPLTHFPHHYIPAGTNPVPQANKETVAAMTGAEEGTCKC
GLCRSYQLLSKNLPTIPTGVRSHALFGGAITFTLPASFANVSEIRQVPDN
QEVFVDQSSDASLILELLELERGKEGLEVCVCKAAKYFFCDLAEHNEAQA
ANIQFQADMSKTGVVPHLDAYPTYCLIGTQSISKFHTPSAAHQSVRIYLV
NVRLQQTGTDLVLTLNLPPSAQAPAAAEFSQTLFIQVGKSLER*
back to top

mRNA from alignment at scaffold_104:1..1418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11746 ID=mRNA_11746|Name=jgi.p|Nanoce1779_2|29390|organism=Nannochloropsis oceanica|type=mRNA|length=1418bp|location=Sequence derived from alignment at scaffold_104:1..1418- (Nannochloropsis oceanica)
CGTGTGAGTGCCGTGTGGATGTGTCAAGCGGAAGAGGGGATGTGTGGTAG
GTGGCAGACGAACGAAGCGACCAAGTGAAGTAAATACGGCGAAAGACCCA
TCGCCAATACGCCACCATCATGGCAACCTTCACAAGGTAGGGGCCTACTG
CTCTGTCTGCGCCAGTGACACACAGTGTATGTAGGCGTAATTGTCTAAGC
TACGCGGGGCAACCTTAGCTTGTTTCTCTTCCTCTGGCCGAGAACACCGT
TGCAACTGAAGCCTTCAAGGCGTGGGTGCTCTCGTGCATCCTCGGGGAGG
GCTTTCTGGCGCGTTCCGAAGCATATCGACACTGTACCGTGCAGATATTG
CATCCAGATGATCACATTTTATGCATTTCATCCATCTCAGACTTGTGCAG
CTTTAGTTGTCAAGTTCTATGCCCTTCCGGGCATCCAGGCGACCTCCTCC
CCATCCTCTTACCCACTTCCCACATCACTATATACCCGCAGGCACGAATC
CCGTTCCTCAGGCAAATAAGGAAACGGTTGCTGCTATGACCGGGGCAGAG
GAAGGTACGTGCAAATGCGGATTATGCCGCTCGTATCAACTCCTCTCCAA
GAACCTCCCCACCATCCCCACAGGAGTCCGATCCCACGCCCTATTCGGCG
GTGCCATCACATTCACCCTGCCCGCCTCGTTTGCAAACGTCAGGTAAGTA
AATTTTACCTGTTAGTTGTGGTCTTCGCACTTCGTGCTCTCTTCCTGGTA
CAATCTAAGGGCTAGGGTGACAGACTCGTAGGCCCCTCCCTGACAGTCAC
ACATAATATATACCATCCCTTTTGCAGCGAGATTCGCCAGGTACCAGACA
ATCAAGAAGTCTTTGTAGACCAAAGTTCGGACGCGTCACTTATCCTAGAA
TTGCTGGAGCTGGAGCGGGGCAAGGAGGGCCTTGAGGTATGTGTCTGTAA
GGTACCGAACAGGGAGGGAGTGTAGTGGCGTATGCGTGATTTCACTGCCT
GTGAGTCCTCCACCTCGAGCCTCTACACAATTAATCCTTATCCATTAAAT
AGGCCGCAAAATACTTTTTCTGTGACCTTGCCGAGCACAACGAAGCCCAG
GCCGCGAACATTCAGTTTCAAGCGGACATGAGCAAAACCGGGGTCGTGCC
GCATTTAGATGCCTACCCAACCTACTGTCTTATCGGCACACAAAGTATCT
CCAAGTTCCACACGCCCAGTGCGGCACATCAATCTGTGCGTATCTATCTT
GTCAATGTGCGCTTGCAACAGACGGGCACGGACCTCGTTCTAACCCTCAA
CTTGCCCCCATCGGCACAAGCACCCGCCGCCGCCGAATTTAGCCAGACCT
TGTTCATCCAGGTAGGTAAGTCTCTTGAGAGATGAAGGAATCGGGAGCGA
CATATCTGGTGGGCATAT
back to top

Coding sequence (CDS) from alignment at scaffold_104:1..1418-

>mRNA_11746 ID=mRNA_11746|Name=jgi.p|Nanoce1779_2|29390|organism=Nannochloropsis oceanica|type=CDS|length=2196bp|location=Sequence derived from alignment at scaffold_104:1..1418- (Nannochloropsis oceanica)
GCCGCAAAATACTTTTTCTGTGACCTTGCCGAGCACAACGAAGCCCAGGC
CGCGAACATTCAGTTTCAAGCGGACATGAGCAAAACCGGGGTCGTGCCGC
ATTTAGATGCCTACCCAACCTACTGTCTTATCGGCACACAAAGTATCTCC
AAGTTCCACACGCCCAGTGCGGCACATCAATCTGTGCGTATCTATCTTGT
CAATGTGCGCTTGCAACAGACGGGCACGGACCTCGTTCTAACCCTCAACT
TGCCCCCATCGGCACAAGCACCCGCCGCCGCCGAATTTAGCCAGACCTTG
TTCATCCAGGTAGGTAAGTCTCTTGAGAGATGACGAGATTCGCCAGGTAC
CAGACAATCAAGAAGTCTTTGTAGACCAAAGTTCGGACGCGTCACTTATC
CTAGAATTGCTGGAGCTGGAGCGGGGCAAGGAGGGCCTTGAGGTATGTGT
CTGTAAGATGCCCTTCCGGGCATCCAGGCGACCTCCTCCCCATCCTCTTA
CCCACTTCCCACATCACTATATACCCGCAGGCACGAATCCCGTTCCTCAG
GCAAATAAGGAAACGGTTGCTGCTATGACCGGGGCAGAGGAAGGTACGTG
CAAATGCGGATTATGCCGCTCGTATCAACTCCTCTCCAAGAACCTCCCCA
CCATCCCCACAGGAGTCCGATCCCACGCCCTATTCGGCGGTGCCATCACA
TTCACCCTGCCCGCCTCGTTTGCAAACGTCAGGCCGCAAAATACTTTTTC
TGTGACCTTGCCGAGCACAACGAAGCCCAGGCCGCGAACATTCAGTTTCA
AGCGGACATGAGCAAAACCGGGGTCGTGCCGCATTTAGATGCCTACCCAA
CCTACTGTCTTATCGGCACACAAAGTATCTCCAAGTTCCACACGCCCAGT
GCGGCACATCAATCTGTGCGTATCTATCTTGTCAATGTGCGCTTGCAACA
GACGGGCACGGACCTCGTTCTAACCCTCAACTTGCCCCCATCGGCACAAG
CACCCGCCGCCGCCGAATTTAGCCAGACCTTGTTCATCCAGGTAGGTAAG
TCTCTTGAGAGATGACGAGATTCGCCAGGTACCAGACAATCAAGAAGTCT
TTGTAGACCAAAGTTCGGACGCGTCACTTATCCTAGAATTGCTGGAGCTG
GAGCGGGGCAAGGAGGGCCTTGAGGTATGTGTCTGTAAGATGCCCTTCCG
GGCATCCAGGCGACCTCCTCCCCATCCTCTTACCCACTTCCCACATCACT
ATATACCCGCAGGCACGAATCCCGTTCCTCAGGCAAATAAGGAAACGGTT
GCTGCTATGACCGGGGCAGAGGAAGGTACGTGCAAATGCGGATTATGCCG
CTCGTATCAACTCCTCTCCAAGAACCTCCCCACCATCCCCACAGGAGTCC
GATCCCACGCCCTATTCGGCGGTGCCATCACATTCACCCTGCCCGCCTCG
TTTGCAAACGTCAGGCCGCAAAATACTTTTTCTGTGACCTTGCCGAGCAC
AACGAAGCCCAGGCCGCGAACATTCAGTTTCAAGCGGACATGAGCAAAAC
CGGGGTCGTGCCGCATTTAGATGCCTACCCAACCTACTGTCTTATCGGCA
CACAAAGTATCTCCAAGTTCCACACGCCCAGTGCGGCACATCAATCTGTG
CGTATCTATCTTGTCAATGTGCGCTTGCAACAGACGGGCACGGACCTCGT
TCTAACCCTCAACTTGCCCCCATCGGCACAAGCACCCGCCGCCGCCGAAT
TTAGCCAGACCTTGTTCATCCAGGTAGGTAAGTCTCTTGAGAGATGACGA
GATTCGCCAGGTACCAGACAATCAAGAAGTCTTTGTAGACCAAAGTTCGG
ACGCGTCACTTATCCTAGAATTGCTGGAGCTGGAGCGGGGCAAGGAGGGC
CTTGAGGTATGTGTCTGTAAGATGCCCTTCCGGGCATCCAGGCGACCTCC
TCCCCATCCTCTTACCCACTTCCCACATCACTATATACCCGCAGGCACGA
ATCCCGTTCCTCAGGCAAATAAGGAAACGGTTGCTGCTATGACCGGGGCA
GAGGAAGGTACGTGCAAATGCGGATTATGCCGCTCGTATCAACTCCTCTC
CAAGAACCTCCCCACCATCCCCACAGGAGTCCGATCCCACGCCCTATTCG
GCGGTGCCATCACATTCACCCTGCCCGCCTCGTTTGCAAACGTCAG
back to top
Synonyms
Publications