jgi.p|Nanoce1779_2|615607, mRNA_11753 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|615607
Unique NamemRNA_11753
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length761
Alignment locationscaffold_104:25902..27605 +

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Properties
Property NameValue
TranscriptId615693
TrackFilteredModels2
ProteinId615607
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_104supercontigscaffold_104:25902..27605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615607gene_11753Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615607mRNA_11753-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11753CDS_11753Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11753 ID=mRNA_11753|Name=jgi.p|Nanoce1779_2|615607|organism=Nannochloropsis oceanica|type=mRNA|length=761bp
ACGACAGCGGCACCATGGGACGACGACCTGCACGCTGCTATCGCTTCCAT
AAGAAGAAGCCCTATATCAAGTCGCGGTACCTTCGTGGTGTGCCCGACTC
CAAGATCCGCATATTCGACGGTGGCAACAAGCGGGCCGACGTGGGGCTCT
ACCCATGCGTGGTGCACATGGTGTCAGATGAGAAGGAGCAGATCTCGTCC
GAAGCCATGGAGGCTGCGCGCGTGGCGTGCAACAAGTACATGCTCAAGAA
CGCCGGCAAGGATACTTACCACATCCGTGTGCGCATGCACCCTTACCACG
TCCTACGTATGTCAAAGATGCTTTCCTGCGCCGGTGCCGATCGTCTTTCC
CAGGGTATGCGCCACTCCTTCGGCAAGCCCGCGGGCAAGGTGGCGCGTAT
CGAGATTGGGCAGGTGATGATCAGTGTCCGCTGCAAGGACGTGCACCAGC
ACCACGCGATCGAGGCGCTCCGAAGAGCCAAGTTCAAATTCCCCGGCCGA
CAGAAGATCCTGAAGTCCAACAAGTGGGGTTTTACGGAATGGGACAGAGA
GGAGTACGTCCGTCGCAGGCTGGACGGCACGCTCATCGCCGATGGGGTGG
GCGTGAAGTATGTGGCGCAGCACGGGCCCCTGGGCAAGAAGCCGGGTACT
TAATGGGGAAAGGAAGGAAGGAAGGATAGAATGGCAGTGATAGGGAAGAG
AGGACGGAGGAGGAGAAGAGAGGCGTGAGAAGGTTTGGTGTGTGTAGGGG
CGGACGGAGGA
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protein sequence of jgi.p|Nanoce1779_2|615607

>mRNA_11753-protein ID=mRNA_11753-protein|Name=jgi.p|Nanoce1779_2|615607|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKRADVGLYPCVV
HMVSDEKEQISSEAMEAARVACNKYMLKNAGKDTYHIRVRMHPYHVLRMS
KMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQVMISVRCKDVHQHHAIE
ALRRAKFKFPGRQKILKSNKWGFTEWDREEYVRRRLDGTLIADGVGVKYV
AQHGPLGKKPGT*
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mRNA from alignment at scaffold_104:25902..27605+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11753 ID=mRNA_11753|Name=jgi.p|Nanoce1779_2|615607|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp|location=Sequence derived from alignment at scaffold_104:25902..27605+ (Nannochloropsis oceanica)
ACGACAGCGGCACCATGGGACGACGACCTGCACGCTGCTATCGCTTCCAT
AAGAAGAAGCCCTATATCAAGTCGCGGTACCTTCGTGGTGTGCCCGGTAC
GTAGTCGGGAAACGGACCGCGGAAGGGAGAACGTTGGACCAAGGGCGGGG
GGGCCGTGTGCTGGCAGGGGAGAAATGTACCTGGCATCAGGCCAAGCTCT
TTCGCGTCCCTACCACTTTCTAGTGTTAGTATGTGTGTCTGTGCGCGCAG
GTGATGCTGTCGCGGACTAGGACTCTATTCGTGCTCGTGACGGGCCGCTT
TACTCTGTTCTTTCCGGCATGCTCACTCCGTCTGCCATTTTGTCCCTCGT
TCTCTGACTTTAGACTCCAAGATCCGCATATTCGACGGTGGCAACAAGCG
GGCCGACGTGGGGCTCTACCCATGCGTGGTGCACATGGTGTCAGATGAGA
AGGAGCAGATCTCGTCCGAAGCCATGGAGGCTGCGCGCGTGGCGTGCAAC
AAGTACATGCTCAAGAACGCCGGCAAGGTACACGACGATCGGAGATAGGG
AAGGGGAGGGAAGGACGGAGAGAGTTAGAGAGAGAGGAAGTGAAGGAGGG
AAGAAGAGTGATGCATGCTCTCCTTGTTAGTAGTCGTGGTGGCGGAAAGG
TACTTGTTTTGCTGTGTGTACTCGTTAGACCCTTAATTAGACGTTTCCCA
GCCTCGGTCCCTCGGCTCACTCTCAACCCCCCATCCCCCTCCTCTCCCTT
CTTTGCTCCGTCCCCCTTACTCCCCCTTGCATTGTTACAGGATACTTACC
ACATCCGTGTGCGCATGCACCCTTACCACGTCCTACGTATGTCAAAGATG
CTTTCCTGCGCCGGTGCCGATCGTCTTTCCCAGGTAAAGTCGGAGGGAGA
GAGGGAGGAAGGGTAAGGTGGTTACGTTATCTCCCATCTTCTCCAAAATA
TGTGCACCACCAACATCAAAAATGATTCAATTTTGTGCATCTTCCTTCTC
GTCTTGACCCTTCCCGAAGACCACCCACGTACTTTGGATCCACCTCCTCT
CACCCCCTCCACCCTTCCGCCCTCCCCTCCCCCCCTTCCTCGATAGGGTA
TGCGCCACTCCTTCGGCAAGCCCGCGGGCAAGGTGGCGCGTATCGAGATT
GGGCAGGTGATGATCAGTGTCCGCTGCAAGGACGTGCACCAGCACCACGC
GATCGAGGCGCTCCGAAGAGCCAAGTTCAAATTCCCCGGCCGACAGAAGG
TAAGGCTCAGAGCAACCAAGAAAAGTCGTAGAGATAGAGAAGGAAGTTGA
GAAATTGGATAGGAAGAGGGTCATGCGCCTATACGTGCACTTTTCTCTTT
TCCACGCAACGCCCACACGTCCACCGCCCTACCGCCTCCACTTACCCCCC
CCCCCCCCCCCTCTTCCCGAACCTCCCCACCAATTACTAATTTCAATAGA
TCCTGAAGTCCAACAAGTGGGGTTTTACGGAATGGGACAGAGAGGAGTAC
GTCCGTCGCAGGCTGGACGGCACGCTCATCGCCGATGGGGTGGGCGTGAA
GTATGTGGCGCAGCACGGGCCCCTGGGCAAGAAGCCGGGTACTTAATGGG
GAAAGGAAGGAAGGAAGGATAGAATGGCAGTGATAGGGAAGAGAGGACGG
AGGAGGAGAAGAGAGGCGTGAGAAGGTTTGGTGTGTGTAGGGGCGGACGG
AGGA
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Coding sequence (CDS) from alignment at scaffold_104:25902..27605+

>mRNA_11753 ID=mRNA_11753|Name=jgi.p|Nanoce1779_2|615607|organism=Nannochloropsis oceanica|type=CDS|length=3195bp|location=Sequence derived from alignment at scaffold_104:25902..27605+ (Nannochloropsis oceanica)
ATGGGACGACGACCTGCACGCTGCTATCGCTTCCATAAGAAGAAGCCCTA
TATCAAGTCGCGGTACCTTCGTGGTGTGCCCGACTCCAAGATCCGCATAT
TCGACGGTGGCAACAAGCGGGCCGACGTGGGGCTCTACCCATGCGTGGTG
CACATGGTGTCAGATGAGAAGGAGCAGATCTCGTCCGAAGCCATGGAGGC
TGCGCGCGTGGCGTGCAACAAGTACATGCTCAAGAACGCCGGCAAGGATA
CTTACCACATCCGTGTGCGCATGCACCCTTACCACGTCCTACGTATGTCA
AAGATGCTTTCCTGCGCCGGTGCCGATCGTCTTTCCCAGGGTATGCGCCA
CTCCTTCGGCAAGCCCGCGGGCAAGGTGGCGCGTATCGAGATTGGGCAGG
TGATGATCAGTGTCCGCTGCAAGGACGTGCACCAGCACCACGCGATCGAG
GCGCTCCGAAGAGCCAAGTTCAAATTCCCCGGCCGACAGAAGATCCTGAA
GTCCAACAAGTGGGGTTTTACGGAATGGGACAGAGAGGAGTACGTCCGTC
GCAGGCTGGACGGCACGCTCATCGCCGATGGGGTGGGCGTGAAGTATGTG
GCGCAGCACGGGCCCCTGGGCAAGAAGCCGGGTACTTAAATGGGACGACG
ACCTGCACGCTGCTATCGCTTCCATAAGAAGAAGCCCTATATCAAGTCGC
GGTACCTTCGTGGTGTGCCCGACTCCAAGATCCGCATATTCGACGGTGGC
AACAAGCGGGCCGACGTGGGGCTCTACCCATGCGTGGTGCACATGGTGTC
AGATGAGAAGGAGCAGATCTCGTCCGAAGCCATGGAGGCTGCGCGCGTGG
CGTGCAACAAGTACATGCTCAAGAACGCCGGCAAGGATACTTACCACATC
CGTGTGCGCATGCACCCTTACCACGTCCTACGTATGTCAAAGATGCTTTC
CTGCGCCGGTGCCGATCGTCTTTCCCAGGGTATGCGCCACTCCTTCGGCA
AGCCCGCGGGCAAGGTGGCGCGTATCGAGATTGGGCAGGTGATGATCAGT
GTCCGCTGCAAGGACGTGCACCAGCACCACGCGATCGAGGCGCTCCGAAG
AGCCAAGTTCAAATTCCCCGGCCGACAGAAGATCCTGAAGTCCAACAAGT
GGGGTTTTACGGAATGGGACAGAGAGGAGTACGTCCGTCGCAGGCTGGAC
GGCACGCTCATCGCCGATGGGGTGGGCGTGAAGTATGTGGCGCAGCACGG
GCCCCTGGGCAAGAAGCCGGGTACTTAAATGGGACGACGACCTGCACGCT
GCTATCGCTTCCATAAGAAGAAGCCCTATATCAAGTCGCGGTACCTTCGT
GGTGTGCCCGACTCCAAGATCCGCATATTCGACGGTGGCAACAAGCGGGC
CGACGTGGGGCTCTACCCATGCGTGGTGCACATGGTGTCAGATGAGAAGG
AGCAGATCTCGTCCGAAGCCATGGAGGCTGCGCGCGTGGCGTGCAACAAG
TACATGCTCAAGAACGCCGGCAAGGATACTTACCACATCCGTGTGCGCAT
GCACCCTTACCACGTCCTACGTATGTCAAAGATGCTTTCCTGCGCCGGTG
CCGATCGTCTTTCCCAGGGTATGCGCCACTCCTTCGGCAAGCCCGCGGGC
AAGGTGGCGCGTATCGAGATTGGGCAGGTGATGATCAGTGTCCGCTGCAA
GGACGTGCACCAGCACCACGCGATCGAGGCGCTCCGAAGAGCCAAGTTCA
AATTCCCCGGCCGACAGAAGATCCTGAAGTCCAACAAGTGGGGTTTTACG
GAATGGGACAGAGAGGAGTACGTCCGTCGCAGGCTGGACGGCACGCTCAT
CGCCGATGGGGTGGGCGTGAAGTATGTGGCGCAGCACGGGCCCCTGGGCA
AGAAGCCGGGTACTTAAATGGGACGACGACCTGCACGCTGCTATCGCTTC
CATAAGAAGAAGCCCTATATCAAGTCGCGGTACCTTCGTGGTGTGCCCGA
CTCCAAGATCCGCATATTCGACGGTGGCAACAAGCGGGCCGACGTGGGGC
TCTACCCATGCGTGGTGCACATGGTGTCAGATGAGAAGGAGCAGATCTCG
TCCGAAGCCATGGAGGCTGCGCGCGTGGCGTGCAACAAGTACATGCTCAA
GAACGCCGGCAAGGATACTTACCACATCCGTGTGCGCATGCACCCTTACC
ACGTCCTACGTATGTCAAAGATGCTTTCCTGCGCCGGTGCCGATCGTCTT
TCCCAGGGTATGCGCCACTCCTTCGGCAAGCCCGCGGGCAAGGTGGCGCG
TATCGAGATTGGGCAGGTGATGATCAGTGTCCGCTGCAAGGACGTGCACC
AGCACCACGCGATCGAGGCGCTCCGAAGAGCCAAGTTCAAATTCCCCGGC
CGACAGAAGATCCTGAAGTCCAACAAGTGGGGTTTTACGGAATGGGACAG
AGAGGAGTACGTCCGTCGCAGGCTGGACGGCACGCTCATCGCCGATGGGG
TGGGCGTGAAGTATGTGGCGCAGCACGGGCCCCTGGGCAAGAAGCCGGGT
ACTTAAATGGGACGACGACCTGCACGCTGCTATCGCTTCCATAAGAAGAA
GCCCTATATCAAGTCGCGGTACCTTCGTGGTGTGCCCGACTCCAAGATCC
GCATATTCGACGGTGGCAACAAGCGGGCCGACGTGGGGCTCTACCCATGC
GTGGTGCACATGGTGTCAGATGAGAAGGAGCAGATCTCGTCCGAAGCCAT
GGAGGCTGCGCGCGTGGCGTGCAACAAGTACATGCTCAAGAACGCCGGCA
AGGATACTTACCACATCCGTGTGCGCATGCACCCTTACCACGTCCTACGT
ATGTCAAAGATGCTTTCCTGCGCCGGTGCCGATCGTCTTTCCCAGGGTAT
GCGCCACTCCTTCGGCAAGCCCGCGGGCAAGGTGGCGCGTATCGAGATTG
GGCAGGTGATGATCAGTGTCCGCTGCAAGGACGTGCACCAGCACCACGCG
ATCGAGGCGCTCCGAAGAGCCAAGTTCAAATTCCCCGGCCGACAGAAGAT
CCTGAAGTCCAACAAGTGGGGTTTTACGGAATGGGACAGAGAGGAGTACG
TCCGTCGCAGGCTGGACGGCACGCTCATCGCCGATGGGGTGGGCGTGAAG
TATGTGGCGCAGCACGGGCCCCTGGGCAAGAAGCCGGGTACTTAA
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Synonyms
Publications