jgi.p|Nanoce1779_2|634641, mRNA_11751 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|634641
Unique Name	mRNA_11751
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	901
Alignment location	scaffold_104:17948..19553 -

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Properties


Property Name	Value
TranscriptId	634727
Track	FilteredModels2
ProteinId	634641

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_104	supercontig	scaffold_104:17948..19553 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634641	gene_11751	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634641	mRNA_11751-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11751	CDS_11751	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_104:17948..19553-
coding sequence from alignment at scaffold_104:17948..19553-

mRNA sequence

>mRNA_11751 ID=mRNA_11751|Name=jgi.p|Nanoce1779_2|634641|organism=Nannochloropsis oceanica|type=mRNA|length=901bp
ACAGACCTTCAAATGCCGAGCAACAGTCCCATAAAACCCTCGGCTCCTTC
CTCGGCTGACAGAGTCAGTCGTGTCCTTCTCCCAGCCATCACCACGTGTC
AACATGTTTCACCCACCCCTCCTGCGCATTGTGTCTTGATTCCCACAAGA
AAAGCCACCACCAAAATCAGCACTTCCAAGGTCTCCAAGCAGAGGTATAC
TCCCGCCCCTCGAGGAGAGATGAAAAGCAGAAGCAGCACTGGCAACGCGC
AGGCCTGCGTGACCTCTTACATTGTCCTGCCCGTTGGAGAGAAAGCAGAA
TTATCTGCCAGGAGCAGCCGCATCAGCAGTGCCACTGCCTTGCTAGGCGG
CGATGCCCAACCTACCAGCATTGGCGCACGGGAAGGTGCGCCCAAATCGA
AGAAGGCCGCAGATGGAGCTGAGGAAGAAAGACACGAAACCAACGAAGAA
GACCAAGAAGACGAAGAAGAGGAAGAAGAGGAGGAAGATGCCAGGTCGGA
AAATGAGGGGGAGGAAGGAGAGGAGGAGGATGAGGGGGAGGAGGAGGGGG
AGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAAGAGGAGGAGGAGGCAAAG
AAGATCGAGGAGGAGAGGAGGGAGACAGTGCCAAGGGAAGATAGGGATAT
CGCTATTGAGAGCAAGCAGCAGAAGCAGCAGCAGCAGCATAACGCATCTC
GCCCTCTGGGCATCAAAGCTCCGGCTGCCGGCCCTCCTCCTCGCCCTTCC
CTCCTATCCCCCTCCATGGCCTCCCCCACTACCACCGTGGCCTCCACATG
CCCCTCAACACCCTCCAACCCCTCCAGCCCGTCCCCTTTCACCTCCTCCT
CTTCTTTCTCATCCTTTTCCTCGGCCTCCACTTCCTCCCCCGCCCCTATC
C

protein sequence of jgi.p|Nanoce1779_2|634641

>mRNA_11751-protein ID=mRNA_11751-protein|Name=jgi.p|Nanoce1779_2|634641|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MPSNSPIKPSAPSSADRVSRVLLPAITTCQHVSPTPPAHCVLIPTRKATT
KISTSKVSKQRYTPAPRGEMKSRSSTGNAQACVTSYIVLPVGEKAELSAR
SSRISSATALLGGDAQPTSIGAREGAPKSKKAADGAEEERHETNEEDQED
EEEEEEEEDARSENEGEEGEEEDEGEEEGEEEEEEEEEEEEEEEAKKIEE
ERRETVPREDRDIAIESKQQKQQQQHNASRPLGIKAPAAGPPPRPSLLSP
SMASPTTTVASTCPSTPSNPSSPSPFTSSSSFSSFSSASTSSPAPI

mRNA from alignment at scaffold_104:17948..19553-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11751 ID=mRNA_11751|Name=jgi.p|Nanoce1779_2|634641|organism=Nannochloropsis oceanica|type=mRNA|length=1606bp|location=Sequence derived from alignment at scaffold_104:17948..19553- (Nannochloropsis oceanica)
ACAGACCTTCAAATGCCGAGCAACAGTCCCATAAAACCCTCGGCTCCTTC
CTCGGCTGACAGAGTCAGTCGTGTCCTTCTCCCAGCCATCACCACGTGTC
AACATGTTTCACCCACCCCTCCTGCGCATTGTGTCTTGATTCCCACAAGA
AAAGCCACCACCAAAATCAGCACTTCCAAGGTCTCCAAGCAGAGGTATAC
TCCCGCCCCTCGAGGAGAGATGAAAAGCAGAAGCAGGTACGTCGACAAGA
CTTCCATGGCTCACTATACCGACTTTCTCTCACCTATGTCCCGCTTTTTC
TCCTTCCAATCCGCACCTACACAAAGCACTGGCAACGCGCAGGCCTGCGT
GACCTCTTACATTGTCCTGCCCGTTGGAGAGAAAGCAGAATTATCTGCCA
GGAGCAGCCGCATCAGCAGTGCCACTGCCTTGCTAGGCGGCGATGCCCAA
CCTACCAGCATTGGCGCACGGGAAGGTGCGCCCAAATCGAAGGTAGGAGG
GGCTGGGAGTAAGGGAGGATGGGAAGGAGAGAAGGAGGGAGGACTGGCAC
GTACATGGCACACCCCATTGATTTCTGAGGAGGAGCGAAGAAGAAAAACA
AGACAAAGGAAGAGAAATCTTTCGTGTGCGGGTGCAAAGTGATCAGCGCC
TCAGATAGAATAGTGTCGGTGAATTGGCGAAGGATGAGAAGAGGGAGAGC
GCGGGTTGTACCTTTTACAGCAATACTTGTAATATTGTGTACTCTCACAA
ACTGCTACTCATACAGAAGGCCGCAGATGGAGCTGAGGAAGAAAGACACG
AAACCAACGAAGAAGACCAAGAAGACGAAGAAGAGGAAGAAGAGGAGGAA
GATGCCAGGTCGGAAAATGAGGGGGAGGAAGGAGAGGAGGAGGATGAGGG
GGAGGAGGAGGGGGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAAGAGG
AGGAGGAGGCAAAGAAGATCGAGGAGGAGAGGAGGGAGACAGTGCCAAGG
GAAGATAGGGATATCGCTATTGAGAGGTAAAGATTTGAGGTTGGGATTGT
GTATATTTTTCGATTCATGTGTGTATTACCACTTGTGAGATGAGAAAGTA
GGATGAGGAATTGTCGCGCTGCCGCATCCTCCCTCCCTTCTTCCCTCCCT
CCTTCCCTGCCTCCCTCTTCCCCTCCCTTGAGTAGTAGGGCGCGCATACT
AGCGCTCATGTTTTCCTCTATCTCAACTTCCTCCTCTTCCTCCCTCCTTC
CCTCGAGTGGCGGGGCATGCAAAGTATCCACATGTGCCTACTCGCCAGTC
ATACAAGGAATGTCAGGCCAGCGCAGCTCTAACCTCCGCCCGCTCTTTTC
TTTCTTCCCACCCACAGCAAGCAGCAGAAGCAGCAGCAGCAGCATAACGC
ATCTCGCCCTCTGGGCATCAAAGCTCCGGCTGCCGGCCCTCCTCCTCGCC
CTTCCCTCCTATCCCCCTCCATGGCCTCCCCCACTACCACCGTGGCCTCC
ACATGCCCCTCAACACCCTCCAACCCCTCCAGCCCGTCCCCTTTCACCTC
CTCCTCTTCTTTCTCATCCTTTTCCTCGGCCTCCACTTCCTCCCCCGCCC
CTATCC

Coding sequence (CDS) from alignment at scaffold_104:17948..19553-

>mRNA_11751 ID=mRNA_11751|Name=jgi.p|Nanoce1779_2|634641|organism=Nannochloropsis oceanica|type=CDS|length=3552bp|location=Sequence derived from alignment at scaffold_104:17948..19553- (Nannochloropsis oceanica)
CAAGCAGCAGAAGCAGCAGCAGCAGCATAACGCATCTCGCCCTCTGGGCA
TCAAAGCTCCGGCTGCCGGCCCTCCTCCTCGCCCTTCCCTCCTATCCCCC
TCCATGGCCTCCCCCACTACCACCGTGGCCTCCACATGCCCCTCAACACC
CTCCAACCCCTCCAGCCCGTCCCCTTTCACCTCCTCCTCTTCTTTCTCAT
CCTTTTCCTCGGCCTCCACTTCCTCCCCCGCCCCTATCAAGGCCGCAGAT
GGAGCTGAGGAAGAAAGACACGAAACCAACGAAGAAGACCAAGAAGACGA
AGAAGAGGAAGAAGAGGAGGAAGATGCCAGGTCGGAAAATGAGGGGGAGG
AAGGAGAGGAGGAGGATGAGGGGGAGGAGGAGGGGGAGGAGGAGGAGGAG
GAAGAAGAGGAGGAGGAAGAGGAGGAGGAGGCAAAGAAGATCGAGGAGGA
GAGGAGGGAGACAGTGCCAAGGGAAGATAGGGATATCGCTATTGAGAGCA
CTGGCAACGCGCAGGCCTGCGTGACCTCTTACATTGTCCTGCCCGTTGGA
GAGAAAGCAGAATTATCTGCCAGGAGCAGCCGCATCAGCAGTGCCACTGC
CTTGCTAGGCGGCGATGCCCAACCTACCAGCATTGGCGCACGGGAAGGTG
CGCCCAAATCGAAGATGCCGAGCAACAGTCCCATAAAACCCTCGGCTCCT
TCCTCGGCTGACAGAGTCAGTCGTGTCCTTCTCCCAGCCATCACCACGTG
TCAACATGTTTCACCCACCCCTCCTGCGCATTGTGTCTTGATTCCCACAA
GAAAAGCCACCACCAAAATCAGCACTTCCAAGGTCTCCAAGCAGAGGTAT
ACTCCCGCCCCTCGAGGAGAGATGAAAAGCAGAAGCAGCAAGCAGCAGAA
GCAGCAGCAGCAGCATAACGCATCTCGCCCTCTGGGCATCAAAGCTCCGG
CTGCCGGCCCTCCTCCTCGCCCTTCCCTCCTATCCCCCTCCATGGCCTCC
CCCACTACCACCGTGGCCTCCACATGCCCCTCAACACCCTCCAACCCCTC
CAGCCCGTCCCCTTTCACCTCCTCCTCTTCTTTCTCATCCTTTTCCTCGG
CCTCCACTTCCTCCCCCGCCCCTATCAAGGCCGCAGATGGAGCTGAGGAA
GAAAGACACGAAACCAACGAAGAAGACCAAGAAGACGAAGAAGAGGAAGA
AGAGGAGGAAGATGCCAGGTCGGAAAATGAGGGGGAGGAAGGAGAGGAGG
AGGATGAGGGGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAAGAAGAGGAG
GAGGAAGAGGAGGAGGAGGCAAAGAAGATCGAGGAGGAGAGGAGGGAGAC
AGTGCCAAGGGAAGATAGGGATATCGCTATTGAGAGCACTGGCAACGCGC
AGGCCTGCGTGACCTCTTACATTGTCCTGCCCGTTGGAGAGAAAGCAGAA
TTATCTGCCAGGAGCAGCCGCATCAGCAGTGCCACTGCCTTGCTAGGCGG
CGATGCCCAACCTACCAGCATTGGCGCACGGGAAGGTGCGCCCAAATCGA
AGATGCCGAGCAACAGTCCCATAAAACCCTCGGCTCCTTCCTCGGCTGAC
AGAGTCAGTCGTGTCCTTCTCCCAGCCATCACCACGTGTCAACATGTTTC
ACCCACCCCTCCTGCGCATTGTGTCTTGATTCCCACAAGAAAAGCCACCA
CCAAAATCAGCACTTCCAAGGTCTCCAAGCAGAGGTATACTCCCGCCCCT
CGAGGAGAGATGAAAAGCAGAAGCAGCAAGCAGCAGAAGCAGCAGCAGCA
GCATAACGCATCTCGCCCTCTGGGCATCAAAGCTCCGGCTGCCGGCCCTC
CTCCTCGCCCTTCCCTCCTATCCCCCTCCATGGCCTCCCCCACTACCACC
GTGGCCTCCACATGCCCCTCAACACCCTCCAACCCCTCCAGCCCGTCCCC
TTTCACCTCCTCCTCTTCTTTCTCATCCTTTTCCTCGGCCTCCACTTCCT
CCCCCGCCCCTATCAAGGCCGCAGATGGAGCTGAGGAAGAAAGACACGAA
ACCAACGAAGAAGACCAAGAAGACGAAGAAGAGGAAGAAGAGGAGGAAGA
TGCCAGGTCGGAAAATGAGGGGGAGGAAGGAGAGGAGGAGGATGAGGGGG
AGGAGGAGGGGGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAAGAGGAG
GAGGAGGCAAAGAAGATCGAGGAGGAGAGGAGGGAGACAGTGCCAAGGGA
AGATAGGGATATCGCTATTGAGAGCACTGGCAACGCGCAGGCCTGCGTGA
CCTCTTACATTGTCCTGCCCGTTGGAGAGAAAGCAGAATTATCTGCCAGG
AGCAGCCGCATCAGCAGTGCCACTGCCTTGCTAGGCGGCGATGCCCAACC
TACCAGCATTGGCGCACGGGAAGGTGCGCCCAAATCGAAGATGCCGAGCA
ACAGTCCCATAAAACCCTCGGCTCCTTCCTCGGCTGACAGAGTCAGTCGT
GTCCTTCTCCCAGCCATCACCACGTGTCAACATGTTTCACCCACCCCTCC
TGCGCATTGTGTCTTGATTCCCACAAGAAAAGCCACCACCAAAATCAGCA
CTTCCAAGGTCTCCAAGCAGAGGTATACTCCCGCCCCTCGAGGAGAGATG
AAAAGCAGAAGCAGCAAGCAGCAGAAGCAGCAGCAGCAGCATAACGCATC
TCGCCCTCTGGGCATCAAAGCTCCGGCTGCCGGCCCTCCTCCTCGCCCTT
CCCTCCTATCCCCCTCCATGGCCTCCCCCACTACCACCGTGGCCTCCACA
TGCCCCTCAACACCCTCCAACCCCTCCAGCCCGTCCCCTTTCACCTCCTC
CTCTTCTTTCTCATCCTTTTCCTCGGCCTCCACTTCCTCCCCCGCCCCTA
TCAAGGCCGCAGATGGAGCTGAGGAAGAAAGACACGAAACCAACGAAGAA
GACCAAGAAGACGAAGAAGAGGAAGAAGAGGAGGAAGATGCCAGGTCGGA
AAATGAGGGGGAGGAAGGAGAGGAGGAGGATGAGGGGGAGGAGGAGGGGG
AGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAAGAGGAGGAGGAGGCAAAG
AAGATCGAGGAGGAGAGGAGGGAGACAGTGCCAAGGGAAGATAGGGATAT
CGCTATTGAGAGCACTGGCAACGCGCAGGCCTGCGTGACCTCTTACATTG
TCCTGCCCGTTGGAGAGAAAGCAGAATTATCTGCCAGGAGCAGCCGCATC
AGCAGTGCCACTGCCTTGCTAGGCGGCGATGCCCAACCTACCAGCATTGG
CGCACGGGAAGGTGCGCCCAAATCGAAGATGCCGAGCAACAGTCCCATAA
AACCCTCGGCTCCTTCCTCGGCTGACAGAGTCAGTCGTGTCCTTCTCCCA
GCCATCACCACGTGTCAACATGTTTCACCCACCCCTCCTGCGCATTGTGT
CTTGATTCCCACAAGAAAAGCCACCACCAAAATCAGCACTTCCAAGGTCT
CCAAGCAGAGGTATACTCCCGCCCCTCGAGGAGAGATGAAAAGCAGAAGC
AG

Synonyms

Publications