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Properties
| Property Name | Value |
|---|
| TranscriptId | 29577 |
| Track | FilteredModels2 |
| ProteinId | 29491 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_104 | supercontig | scaffold_104:7294..9564 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11749 ID=mRNA_11749|Name=jgi.p|Nanoce1779_2|29491|organism=Nannochloropsis oceanica|type=mRNA|length=667bp
GGTGGCTGGGGTCTATCTTCGGAAGGAAGGATAAGCAGCAGGCGGCGACC
GTAACCCAAGGTTGCGCGAGCGTCGAGATGTGCGAAGCGGTGCTGCTGGC
GGGCAGCAACAGCGAAGGGAAGGAGCAGGAGGCTGTCGATGATAAGTGCC
GACACCTTTCGGTGCGAAATGGCGCCAATACAATTCTTTTCCGCCTCCAT
CATTCCCGTCATCGACATCAGACTTGAAGTCGATGCAAAGGCGGGCACCG
CAATTATCCACGCGGTATCGGGCAAGATCAAACGGAGCGACCAGCCAGTG
AACCTCGAAGAAGCGCGTGCAAATGGCTACGTACATACAGGCTCGGGTCA
CTTCGATGAAATGTCCTTCAAGATGAACACCATCAATAACGTCCGCTGGC
AACAGATCGACGAGAAGACGATCAAGATCAGCTCGGAGCTGCAGATGGAG
GTCAGCATGGACAAGCCCGGGTGGCTTTTGGTACCGTCCTCGATGATGAA
TCGCGTGGGCTCTCTCATTTTGCAGCGAGTCGTTAAAAAGACGTTACCCG
AGTTCTTGCAACGGATCCAAAATGGCTATGCACTGTGGGCAGGAGGAGAG
GTGGTGGTATAAGGAGATGCACGGAAAGGAGGGGGACGAGAGGAGGGAGA
GAGAAGGGAATGTGGAT back to topprotein sequence of jgi.p|Nanoce1779_2|29491 >mRNA_11749-protein ID=mRNA_11749-protein|Name=jgi.p|Nanoce1779_2|29491|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MISADTFRCEMAPIQFFSASIIPVIDIRLEVDAKAGTAIIHAVSGKIKRS
DQPVNLEEARANGYVHTGSGHFDEMSFKMNTINNVRWQQIDEKTIKISSE
LQMEVSMDKPGWLLVPSSMMNRVGSLILQRVVKKTLPEFLQRIQNGYALW
AGGEVVV* back to topmRNA from alignment at scaffold_104:7294..9564- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11749 ID=mRNA_11749|Name=jgi.p|Nanoce1779_2|29491|organism=Nannochloropsis oceanica|type=mRNA|length=2271bp|location=Sequence derived from alignment at scaffold_104:7294..9564- (Nannochloropsis oceanica)
GGTGGCTGGGGTCTATCTTCGGAAGGAAGGATAAGCAGCAGGTATGGTGG
GAAGGAAGGATGAGAGGGTGTGTGTCGGCAGCTTCGGGGAGCGAGCTTGG
CCGGAAAGCTAGAAGGGAGGGAGGAAGGACCGTAAAGTAATATGAATATT
TATAAATGTATGTGGCCCACCTGTCATCCAACGACATGCCATGCCACTTC
TCATCCAAAACGATGCATGCTACAGGCGGCGACCGTAACCCAAGGTTGCG
CGAGCGTCGAGATGTGCGAAGCGGTGCTGCTGGCGGGCAGCAACAGCGAA
GGGAAGGAGCAGGAGGCTGTCGATGGTAAGGGACGAGGAAGGGGATGAGG
AGGGAAGGAAGGGGGCGAGAGGAACAGACGGAAGGAGGGCAGGAAGGGCG
TATGAAAGAAGACTCAGAATGTCACCGTCAACGTGGATAAAGATGACGTG
AAGGGAAAGTAGCTAGTGAACGGAGGGGGGGGAAAGGAGGGAGGGAGGGA
GGGGTCAAAACTTCGACCCCGGCGATGGACACAGTCTCACTCTTCCTTTC
TCGTCCCTGCCCTCCCCCTTTCTTTCCGACCCAGCGGAAAGCAAGCTCTT
GTCCCCGTCTGTGCGCACCGTTTTTAAGGCGAAGCAGACGCAGTCAATCC
AAGTCCAGGGTAAAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGAGGTTGACGAGATGTGGGATTGATGGAATTCTGCATTTTCGAGCGTT
CTTTCAGTCTGGATTCCCTGCTTGTGTTTCACGAACCGACCTTCCCTCCC
TCCCTCCCTCCCCCCCCTCCCCCCTTCCCTCAGTCCATGGAAGCAAGAGG
GCCCTCCATGACTACTTCCTCTCTCTCGACGCCCGACCCCATATCCTCAA
TGCCGACAATTTCGAGCAGGTACATACCGTCGTGCCCTCCCTCCCTCCCT
CCCTCCCCCTCTCCCACCCTAGATGGCTGTTGTGCTCTCTAACTTGACCA
CTCACCCCCCCCCCCTCCCCCCGCAGATAAGTGCCGACACCTTTCGGTGC
GAAATGGCGCCAATACAATTCTTTTCCGCCTCCATCATTCCCGTCATCGA
CATCAGGCAAGTCTTCGTCCCTCCCTCCCTCCCTCTCTCCCTGTTTTCCC
CCCACTATCATGGCTTGCTCACCTCCCGCCCTTCTTCCCTCCCTCCCTCC
TCTCTTAGACTTGAAGTCGATGCAAAGGCGGGCACCGCAATTATCCACGC
GGTATCGGGCAAGGTAACACCCTGTCTCCCTCCCTTCTTCCCTCCCTCTC
TCTCTCCTTTCCTCTCTCCCTCCCTTCCCCCACTTCATGCAGTATGCTCA
TCCTTCCTTTTTCTCCCTCCCTCCATCCCTCCCTCCCTCCTTTTTCTCTC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCAGATCAAACGGAGCGACCAGCC
AGTGAACCTCGAAGAAGCGCGTGCAAATGGCTACGTACATACAGGTGCCC
TCCCTTTCTCTCTTCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTTTTTC
TTGTCCAGCAACTCACCCCTCGTTCCCCATCCCTCCCTTCTTTAGTCCCT
GTTCTAGACCCACCTACTTATCCCTCCCTCCCTCCCTCCCTCCCTCTCTT
TCTCGACAGGCTCGGGTCACTTCGATGAAATGTCCTTCAAGATGAACACC
ATCAATAACGTCCGCTGGCAACAGGTGAGTGCCCTCCCACCCGCCCTCCC
TCCCTCCTTCCCTTCCTCCCTCCCTCTCTCCTTCCCTCTCCGATCTTCTC
GCTCCGCCTGAAGGGTCTCACCTCATCCTCCCTCCCTCCCTCTTTCCTTC
CCTCCCTCCCTCCTCCCTCCCGTAGATCGACGAGAAGACGATCAAGATCA
GCTCGGAGCTGCAGATGGAGGTCAGCATGGACAAGCCCGGGTGGCTTTTG
GTACCGTCCTCGATGGTAGGGAGGAAAGGAGGGAGGGAGAGATGGAGGGA
AAGAGAGGAAGGTATTCTTGTCTCCTCTTTCGCGTCGGGCACCATGACAC
ATCCACCAACAAACATTCTTCTTCCCTCCCTTCCTCTCTCCCTGTGCAGA
TGAATCGCGTGGGCTCTCTCATTTTGCAGCGAGTCGTTAAAAAGACGTTA
CCCGAGTTCTTGCAACGGATCCAAAATGGCTATGCACTGTGGGCAGGAGG
AGAGGTGGTGGTATAAGGAGATGCACGGAAAGGAGGGGGACGAGAGGAGG
GAGAGAGAAGGGAATGTGGAT back to topCoding sequence (CDS) from alignment at scaffold_104:7294..9564- >mRNA_11749 ID=mRNA_11749|Name=jgi.p|Nanoce1779_2|29491|organism=Nannochloropsis oceanica|type=CDS|length=3318bp|location=Sequence derived from alignment at scaffold_104:7294..9564- (Nannochloropsis oceanica)
ATGAATCGCGTGGGCTCTCTCATTTTGCAGCGAGTCGTTAAAAAGACGTT
ACCCGAGTTCTTGCAACGGATCCAAAATGGCTATGCACTGTGGGCAGGAG
GAGAGGTGGTGGTATAAATCGACGAGAAGACGATCAAGATCAGCTCGGAG
CTGCAGATGGAGGTCAGCATGGACAAGCCCGGGTGGCTTTTGGTACCGTC
CTCGATGGCTCGGGTCACTTCGATGAAATGTCCTTCAAGATGAACACCAT
CAATAACGTCCGCTGGCAACAGATCAAACGGAGCGACCAGCCAGTGAACC
TCGAAGAAGCGCGTGCAAATGGCTACGTACATACAGACTTGAAGTCGATG
CAAAGGCGGGCACCGCAATTATCCACGCGGTATCGGGCAAGATAAGTGCC
GACACCTTTCGGTGCGAAATGGCGCCAATACAATTCTTTTCCGCCTCCAT
CATTCCCGTCATCGACATCAGATGATGAATCGCGTGGGCTCTCTCATTTT
GCAGCGAGTCGTTAAAAAGACGTTACCCGAGTTCTTGCAACGGATCCAAA
ATGGCTATGCACTGTGGGCAGGAGGAGAGGTGGTGGTATAAATCGACGAG
AAGACGATCAAGATCAGCTCGGAGCTGCAGATGGAGGTCAGCATGGACAA
GCCCGGGTGGCTTTTGGTACCGTCCTCGATGGCTCGGGTCACTTCGATGA
AATGTCCTTCAAGATGAACACCATCAATAACGTCCGCTGGCAACAGATCA
AACGGAGCGACCAGCCAGTGAACCTCGAAGAAGCGCGTGCAAATGGCTAC
GTACATACAGACTTGAAGTCGATGCAAAGGCGGGCACCGCAATTATCCAC
GCGGTATCGGGCAAGATAAGTGCCGACACCTTTCGGTGCGAAATGGCGCC
AATACAATTCTTTTCCGCCTCCATCATTCCCGTCATCGACATCAGATGAT
GAATCGCGTGGGCTCTCTCATTTTGCAGCGAGTCGTTAAAAAGACGTTAC
CCGAGTTCTTGCAACGGATCCAAAATGGCTATGCACTGTGGGCAGGAGGA
GAGGTGGTGGTATAAATCGACGAGAAGACGATCAAGATCAGCTCGGAGCT
GCAGATGGAGGTCAGCATGGACAAGCCCGGGTGGCTTTTGGTACCGTCCT
CGATGGCTCGGGTCACTTCGATGAAATGTCCTTCAAGATGAACACCATCA
ATAACGTCCGCTGGCAACAGATCAAACGGAGCGACCAGCCAGTGAACCTC
GAAGAAGCGCGTGCAAATGGCTACGTACATACAGACTTGAAGTCGATGCA
AAGGCGGGCACCGCAATTATCCACGCGGTATCGGGCAAGATAAGTGCCGA
CACCTTTCGGTGCGAAATGGCGCCAATACAATTCTTTTCCGCCTCCATCA
TTCCCGTCATCGACATCAGATGATGAATCGCGTGGGCTCTCTCATTTTGC
AGCGAGTCGTTAAAAAGACGTTACCCGAGTTCTTGCAACGGATCCAAAAT
GGCTATGCACTGTGGGCAGGAGGAGAGGTGGTGGTATAAATCGACGAGAA
GACGATCAAGATCAGCTCGGAGCTGCAGATGGAGGTCAGCATGGACAAGC
CCGGGTGGCTTTTGGTACCGTCCTCGATGGCTCGGGTCACTTCGATGAAA
TGTCCTTCAAGATGAACACCATCAATAACGTCCGCTGGCAACAGATCAAA
CGGAGCGACCAGCCAGTGAACCTCGAAGAAGCGCGTGCAAATGGCTACGT
ACATACAGACTTGAAGTCGATGCAAAGGCGGGCACCGCAATTATCCACGC
GGTATCGGGCAAGATAAGTGCCGACACCTTTCGGTGCGAAATGGCGCCAA
TACAATTCTTTTCCGCCTCCATCATTCCCGTCATCGACATCAGATGATGA
ATCGCGTGGGCTCTCTCATTTTGCAGCGAGTCGTTAAAAAGACGTTACCC
GAGTTCTTGCAACGGATCCAAAATGGCTATGCACTGTGGGCAGGAGGAGA
GGTGGTGGTATAAATCGACGAGAAGACGATCAAGATCAGCTCGGAGCTGC
AGATGGAGGTCAGCATGGACAAGCCCGGGTGGCTTTTGGTACCGTCCTCG
ATGGCTCGGGTCACTTCGATGAAATGTCCTTCAAGATGAACACCATCAAT
AACGTCCGCTGGCAACAGATCAAACGGAGCGACCAGCCAGTGAACCTCGA
AGAAGCGCGTGCAAATGGCTACGTACATACAGACTTGAAGTCGATGCAAA
GGCGGGCACCGCAATTATCCACGCGGTATCGGGCAAGATAAGTGCCGACA
CCTTTCGGTGCGAAATGGCGCCAATACAATTCTTTTCCGCCTCCATCATT
CCCGTCATCGACATCAGATGATGAATCGCGTGGGCTCTCTCATTTTGCAG
CGAGTCGTTAAAAAGACGTTACCCGAGTTCTTGCAACGGATCCAAAATGG
CTATGCACTGTGGGCAGGAGGAGAGGTGGTGGTATAAATCGACGAGAAGA
CGATCAAGATCAGCTCGGAGCTGCAGATGGAGGTCAGCATGGACAAGCCC
GGGTGGCTTTTGGTACCGTCCTCGATGGCTCGGGTCACTTCGATGAAATG
TCCTTCAAGATGAACACCATCAATAACGTCCGCTGGCAACAGATCAAACG
GAGCGACCAGCCAGTGAACCTCGAAGAAGCGCGTGCAAATGGCTACGTAC
ATACAGACTTGAAGTCGATGCAAAGGCGGGCACCGCAATTATCCACGCGG
TATCGGGCAAGATAAGTGCCGACACCTTTCGGTGCGAAATGGCGCCAATA
CAATTCTTTTCCGCCTCCATCATTCCCGTCATCGACATCAGATGATGAAT
CGCGTGGGCTCTCTCATTTTGCAGCGAGTCGTTAAAAAGACGTTACCCGA
GTTCTTGCAACGGATCCAAAATGGCTATGCACTGTGGGCAGGAGGAGAGG
TGGTGGTATAAATCGACGAGAAGACGATCAAGATCAGCTCGGAGCTGCAG
ATGGAGGTCAGCATGGACAAGCCCGGGTGGCTTTTGGTACCGTCCTCGAT
GGCTCGGGTCACTTCGATGAAATGTCCTTCAAGATGAACACCATCAATAA
CGTCCGCTGGCAACAGATCAAACGGAGCGACCAGCCAGTGAACCTCGAAG
AAGCGCGTGCAAATGGCTACGTACATACAGACTTGAAGTCGATGCAAAGG
CGGGCACCGCAATTATCCACGCGGTATCGGGCAAGATAAGTGCCGACACC
TTTCGGTGCGAAATGGCGCCAATACAATTCTTTTCCGCCTCCATCATTCC
CGTCATCGACATCAGATG back to top
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