NO11G00190, NO11G00190 (gene) Nannochloropsis oceanica

Overview
NameNO11G00190
Unique NameNO11G00190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2152
Alignment locationchr11:78975..81873 -

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal rna methyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:78975..81873 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0016740transferase activity
GO:0008168methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0032259methylation
GO:0032259methylation
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR002877rRNA_MeTrfase_FtsJ_dom
Homology
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BLAST of NO11G00190 vs. NCBI_GenBank
Match: EWM25207.1 (ribosomal rna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 300.8 bits (769), Expect = 5.700e-78
Identity = 179/389 (46.02%), Postives = 222/389 (57.07%), Query Frame = 0 
Query:   10 MAPQSSSPSRTSQHVQP---QPQHHLKHANDD-----DDCDAFATFSTRPITLAPIFPLIWAIEVEPTQLCRISSYLPSAPFP---------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCIANRAKAHSSCLLGATYRMDDQSHLIPPSHQRHISRVFYVPNACGDIGWLAFSPELREALKKAKTSHLXXXXXXXXXXXXXXFCLKISAFPKTMELQIGEVFLTASASSGCRLEEGDLSPSASQATHILHVVHSPDWSPLFYFGLTQSHPSAISSSSLPPSRPPSFPSFAPPTFDK-LHSSSLPPVSRAYYKMKEVWEEYLDEEGREGV---RWKAERKGLDVGASPGGWTQYLR 366
            + P +++  R  QHV+P    P+H                D+ A  ST+PI L P+FP +WA EV  +Q+ R+ SYLP+A FP                                                                    AGCIA+R+  H+SCLLGA YR+DD + LIP  H+R+I+R FYVP AC D+GW+AFSPELR+ALK A++S                FCLKISAFPK ME+ IGE+ LTA  + GCRLEE +LSPSASQA+H+LHVVHSP+WSPLFY+GLTQSH S    +S P   PPSF SF PP+F+K   SSSLPPVSRAY+KM+E+WEE L+E          WK +RK LDVGASPGGWTQYLR
Sbjct:    4 LLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPA-LIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSS------------LSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSH-SLTGPTSAP---PPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGXXXXXXEEMWKKDRKALDVGASPGGWTQYLR 375
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BLAST of NO11G00190 vs. NCBI_GenBank
Match: EWM25206.1 (ribosomal rna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 299.3 bits (765), Expect = 1.600e-77
Identity = 178/388 (45.88%), Postives = 221/388 (56.96%), Query Frame = 0 
Query:   10 MAPQSSSPSRTSQHVQP---QPQHHLKHANDD-----DDCDAFATFSTRPITLAPIFPLIWAIEVEPTQLCRISSYLPSAPFP---------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCIANRAKAHSSCLLGATYRMDDQSHLIPPSHQRHISRVFYVPNACGDIGWLAFSPELREALKKAKTSHLXXXXXXXXXXXXXXFCLKISAFPKTMELQIGEVFLTASASSGCRLEEGDLSPSASQATHILHVVHSPDWSPLFYFGLTQSHPSAISSSSLPPSRPPSFPSFAPPTFDK-LHSSSLPPVSRAYYKMKEVWEEYLDEEGREGV---RWKAERKGLDVGASPGGWTQYL 365
            + P +++  R  QHV+P    P+H                D+ A  ST+PI L P+FP +WA EV  +Q+ R+ SYLP+A FP                                                                    AGCIA+R+  H+SCLLGA YR+DD + LIP  H+R+I+R FYVP AC D+GW+AFSPELR+ALK A++S                FCLKISAFPK ME+ IGE+ LTA  + GCRLEE +LSPSASQA+H+LHVVHSP+WSPLFY+GLTQSH S    +S P   PPSF SF PP+F+K   SSSLPPVSRAY+KM+E+WEE L+E          WK +RK LDVGASPGGWTQYL
Sbjct:    4 LLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPA-LIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSS------------LSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSH-SLTGPTSAP---PPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEXXXXXXXEEMWKKDRKALDVGASPGGWTQYL 374
The following BLAST results are available for this feature:
BLAST of NO11G00190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25207.15.700e-7846.02ribosomal rna methyltransferase [Nannochloropsis g... [more]
EWM25206.11.600e-7745.88ribosomal rna methyltransferase [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL110nonsL110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR081ncniR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00190.3NO11G00190.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G00190.2NO11G00190.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G00190.1NO11G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643355gene_10702Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100311g3gene5294Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00190.3NO11G00190.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G00190.2NO11G00190.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G00190.1NO11G00190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00190 ID=NO11G00190|Name=NO11G00190|organism=Nannochloropsis oceanica|type=gene|length=2152bp
CCAAATGGAAAGACTGAGAGTGTGATAAATCGAAATACTTAATGGATCGT
ATAACGGATTGTGGGGCAGAGAACCTGCCATAGATTTTACGTCCACACGG
AAATGCATTGCCAAGACACGCCCAAAGACACAAGATTCTCCTCACACCTT
CGTGCTTGTTTACACGCTCTACTGATGTATTGATCCCTTACGTATCAATC
ATGTTGATGCAGGGACGGCCAGTGGCAATGGCCCCACAGTCGTCATCGCC
ATCACGGACAAGCCAGCATGTTCAACCGCAACCCCAGCACCATCTCAAGC
ATGCTAACGACGACGACGATTGTGATGCCTTTGCTACTTTCAGCACACGT
CCTATCACCTTGGCCCCGATCTTTCCCTTAATTTGGGCGATTGAGGTGGA
ACCAACGCAGCTATGTCGCATCTCCTCCTACCTGCCGTCTGCTCCTTTCC
CCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCCCCTCC
TCCTCCTCCCACTCATCTACCACCAAAATCACGGATAGCAGCAATCATGC
CCCCTCCTCCTCACCTTTGCCACTACCAAGCACTCTTCCTCTGGCTGGAT
GCATTGCCAACCGCGCGAAAGCCCACTCCAGCTGCCTGTTGGGGGCCACC
TACCGCATGGATGATCAAAGCCACCTCATCCCTCCCTCGCACCAACGACA
CATCAGTCGGGTGTTTTACGTACCGAATGCCTGTGGAGATATTGGCTGGT
TGGCCTTCAGTCCCGAGCTACGGGAGGCGCTTAAGAAGGCGAAGACGAGg
tagggagggagggaagaagggagggaggaaaggatggagggaggaaagga
tggagggaaggagggggacggaagggggaaggaaatgactatcgtttatc
atctcagccgaccttttaacccactctcacactaccctcctttccccgtc
gcctttgatacgcccctttccccgtccctccctccagTCATCTTTCTGCT
TCTTCCGCCTCCTCCTCCCCCTCCTCCTCTCCCTCCTTCTGCCTCAAAAT
CTCCGCCTTCCCCAAAACAATGGAGCTTCAAATCGGTGAAGTGTTTCTCA
CAGCCTCAGCTTCCTCTGGCTGTCGGCTCGAGGAAGGCGACCTTTCTCCT
TCTGCATCCCAAGCCACGCATATACTCCACGTTGTGCATTCGCCCGgtga
ggaggaaggaaggaagggagggagggggcaggggtggctcagcaacgagt
cgtatcgtcacattttctgaatcactcttctaattgcgctttcttccctt
atatccctcctggcccctgaccaatacacacagATTGGAGTCCCTTGTTC
TACTTCGGCCTGACCCAGAGCCACCCCTCGGCGATCTCCTCGTCCTCCCT
CCCTCCCTCCCGCCCGCCCTCCTTCCCTTCCTTCGCACCCCCCACATTCG
ACAAGCTGCACTCCTCCTCCCTTCCTCCCGTCTCTCGCGCGTATTACAAA
ATGAAGGAGGTTTGGGAGGAGTACCTGGATGAGGAAGGGAGGGAGGGCGT
GCGGTGGAAGGCCGAGAGGAAGGGTTTGGATGTGGGGGCATCGCCTGGGG
GATGGACGCAGTACTTGAGGTGAGGGAAGGAAGGAGGGAGGGAGGGAGGG
AGTGTGATAGAGTGTCGTTGCTACCACAGAGAGGGAGAGACGGAGGGAGG
GAGGGACGGAGGGAGGGAGGGACGGAGGGAAAGCAAGAAGCGGGAAGATG
ACGTTAAAAAAAGTGGTTGGGCTGTAGTAACTCAACTGCCTTGTCCCTCC
CTCTCTCCCTCCCTTCCTACCTCACTCCCTCCCTCCTTCCCTCCCCTTCA
ATAGCGACAAGCTATTTCGCGTTATCGCCGTAGACGGAGCCTTCCTTCAC
CCCTCCCTCCCCCCCGCCCTTCCCAACGTCCGGCACGTCATGCACCGGGT
CCAGGCGGAGGAAGCGAGGGAAGTCTTGAAGGAGGAAGGGCCTTTCCACC
TTGTCTGCGTAGATGTGAATCTGTTCCCACAGGTTAGAAGAAGAGGAGGG
AGGGAGGGAGGGAGAGGTGTGCAGTCTTCTGTACGCATTTGGTAATTATA
ATATTTGACGCATCGACTCCCATCTCTCCCTCCTTCTCTTCCTCCTTCTC
TT
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protein sequence of NO11G00190.3

>NO11G00190.3-protein ID=NO11G00190.3-protein|Name=NO11G00190.3|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MLMQGRPVAMAPQSSSPSRTSQHVQPQPQHHLKHANDDDDCDAFATFSTR
PITLAPIFPLIWAIEVEPTQLCRISSYLPSAPFPSSSSSSSSFSSSSSPS
SSSHSSTTKITDSSNHAPSSSPLPLPSTLPLAGCIANRAKAHSSCLLGAT
YRMDDQSHLIPPSHQRHISRVFYVPNACGDIGWLAFSPELREALKKAKTS
HLSASSASSSPSSSPSFCLKISAFPKTMELQIGEVFLTASASSGCRLEEG
DLSPSASQATHILHVVHSPDWSPLFYFGLTQSHPSAISSSSLPPSRPPSF
PSFAPPTFDKLHSSSLPPVSRAYYKMKEVWEEYLDEEGREGVRWKAERKG
LDVGASPGGWTQYLR*
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protein sequence of NO11G00190.2

>NO11G00190.2-protein ID=NO11G00190.2-protein|Name=NO11G00190.2|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MLMQGRPVAMAPQSSSPSRTSQHVQPQPQHHLKHANDDDDCDAFATFSTR
PITLAPIFPLIWAIEVEPTQLCRISSYLPSAPFPSSSSSSSSFSSSSSPS
SSSHSSTTKITDSSNHAPSSSPLPLPSTLPLAGCIANRAKAHSSCLLGAT
YRMDDQSHLIPPSHQRHISRVFYVPNACGDIGWLAFSPELREALKKAKTS
HLSASSASSSPSSSPSFCLKISAFPKTMELQIGEVFLTASASSGCRLEEG
DLSPSASQATHILHVVHSPDWSPLFYFGLTQSHPSAISSSSLPPSRPPSF
PSFAPPTFDKLHSSSLPPVSRAYYKMKEVWEEYLDEEGREGVRWKAERKG
LDVGASPGGWTQYLSDKLFRVIAVDGAFLHPSLPPALPNVRHVMHRVQAE
EAREVLKEEGPFHLVCVDVNLFPQVAADLVLQHVFPFMAHHSLLILTLKF
PRIPTGPRYVGPPSPPACLFCCISCVVFPLFPHFPRSLSPSQ*
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protein sequence of NO11G00190.1

>NO11G00190.1-protein ID=NO11G00190.1-protein|Name=NO11G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MLMQGRPVAMAPQSSSPSRTSQHVQPQPQHHLKHANDDDDCDAFATFSTR
PITLAPIFPLIWAIEVEPTQLCRISSYLPSAPFPSSSSSSSSFSSSSSPS
SSSHSSTTKITDSSNHAPSSSPLPLPSTLPLAGCIANRAKAHSSCLLGAT
YRMDDQSHLIPPSHQRHISRVFYVPNACGDIGWLAFSPELREALKKAKTS
HLSASSASSSPSSSPSFCLKISAFPKTMELQIGEVFLTASASSGCRLEEG
DLSPSASQATHILHVVHSPDWSPLFYFGLTQSHPSAISSSSLPPSRPPSF
PSFAPPTFDKLHSSSLPPVSRAYYKMKEVWEEYLDEEGREGVRWKAERKG
LDVGASPGGWTQYLSDKLFRVIAVDGAFLHPSLPPALPNVRHVMHRVQAE
EAREVLKEEGPFHLVCVDVNLFPQVAADLVLQHVFPFMAHHSLLILTLKF
PRIPTGPRLHKSLRDLERIWAEDPHIYCRASKEEGKEGGKERVMMRLLWL
HANSPKERTVITWVHRR*
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Synonyms
Publications