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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:79722..81873 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G00190.3 vs.
Match: EWM25207.1 (ribosomal rna methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 315.5 bits (807), Expect = 2.200e-82 Identity = 200/389 (51.41%), Postives = 253/389 (65.04%), Query Frame = 0
Query: 10 MAPQSSSPSRTSQHVQPQ---PQHHLKHANDD-----DDCDAFATFSTRPITLAPIFPLIWAIEVEPTQLCRISSYLPSAPFPSSSSSS-----SSFSSSSSPSSSSHSSTTKITDSSNHA--PSSSP--LPLP------------STLPLAGCIANRAKAHSSCLLGATYRMDDQSHLIPPSHQRHISRVFYVPNACGDIGWLAFSPELREALKKAKTSHLSASSASSSPSSSPSFCLKISAFPKTMELQIGEVFLTASASSGCRLEEGDLSPSASQATHILHVVHSPDWSPLFYFGLTQSHPSAISSSSLPPSRPPSFPSFAPPTFDK-LHSSSLPPVSRAYYKMKEVWEEYLD---EEGREGVRWKAERKGLDVGASPGGWTQYLR 366
+ P +++ R QHV+P P+H D+ A ST+PI L P+FP +WA EV +Q+ R+ SYLP+A FPS+ + + + + +SSP + S + +SN PSS P P+P ST PLAGCIA+R+ H+SCLLGA YR+DD + LIP H+R+I+R FYVP AC D+GW+AFSPELR+ALK A++S S SFCLKISAFPK ME+ IGE+ LTA + GCRLEE +LSPSASQA+H+LHVVHSP+WSPLFY+GLTQSH S +S P PPSF SF PP+F+K SSSLPPVSRAY+KM+E+WEE L+ E G E WK +RK LDVGASPGGWTQYLR
Sbjct: 4 LLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPA-LIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSS------------LSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSH-SLTGPTSAP---PPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYLR 375
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G00190.3 ID=NO11G00190.3|Name=NO11G00190.3|organism=Nannochloropsis oceanica|type=mRNA|length=1827bp CCAAATGGAAAGACTGAGAGTGTGATAAATCGAAATACTTAATGGATCGT ATAACGGATTGTGGGGCAGAGAACCTGCCATAGATTTTACGTCCACACGG AAATGCATTGCCAAGACACGCCCAAAGACACAAGATTCTCCTCACACCTT CGTGCTTGTTTACACGCTCTACTGATGTATTGATCCCTTACGTATCAATC ATGTTGATGCAGGGACGGCCAGTGGCAATGGCCCCACAGTCGTCATCGCC ATCACGGACAAGCCAGCATGTTCAACCGCAACCCCAGCACCATCTCAAGC ATGCTAACGACGACGACGATTGTGATGCCTTTGCTACTTTCAGCACACGT CCTATCACCTTGGCCCCGATCTTTCCCTTAATTTGGGCGATTGAGGTGGA ACCAACGCAGCTATGTCGCATCTCCTCCTACCTGCCGTCTGCTCCTTTCC CCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCCCCTCC TCCTCCTCCCACTCATCTACCACCAAAATCACGGATAGCAGCAATCATGC CCCCTCCTCCTCACCTTTGCCACTACCAAGCACTCTTCCTCTGGCTGGAT GCATTGCCAACCGCGCGAAAGCCCACTCCAGCTGCCTGTTGGGGGCCACC TACCGCATGGATGATCAAAGCCACCTCATCCCTCCCTCGCACCAACGACA CATCAGTCGGGTGTTTTACGTACCGAATGCCTGTGGAGATATTGGCTGGT TGGCCTTCAGTCCCGAGCTACGGGAGGCGCTTAAGAAGGCGAAGACGAGT CATCTTTCTGCTTCTTCCGCCTCCTCCTCCCCCTCCTCCTCTCCCTCCTT CTGCCTCAAAATCTCCGCCTTCCCCAAAACAATGGAGCTTCAAATCGGTG AAGTGTTTCTCACAGCCTCAGCTTCCTCTGGCTGTCGGCTCGAGGAAGGC GACCTTTCTCCTTCTGCATCCCAAGCCACGCATATACTCCACGTTGTGCA TTCGCCCGATTGGAGTCCCTTGTTCTACTTCGGCCTGACCCAGAGCCACC CCTCGGCGATCTCCTCGTCCTCCCTCCCTCCCTCCCGCCCGCCCTCCTTC CCTTCCTTCGCACCCCCCACATTCGACAAGCTGCACTCCTCCTCCCTTCC TCCCGTCTCTCGCGCGTATTACAAAATGAAGGAGGTTTGGGAGGAGTACC TGGATGAGGAAGGGAGGGAGGGCGTGCGGTGGAAGGCCGAGAGGAAGGGT TTGGATGTGGGGGCATCGCCTGGGGGATGGACGCAGTACTTGAGGTGAGG GAAGGAAGGAGGGAGGGAGGGAGGGAGTGTGATAGAGTGTCGTTGCTACC ACAGAGAGGGAGAGACGGAGGGAGGGAGGGACGGAGGGAGGGAGGGACGG AGGGAAAGCAAGAAGCGGGAAGATGACGTTAAAAAAAGTGGTTGGGCTGT AGTAACTCAACTGCCTTGTCCCTCCCTCTCTCCCTCCCTTCCTACCTCAC TCCCTCCCTCCTTCCCTCCCCTTCAATAGCGACAAGCTATTTCGCGTTAT CGCCGTAGACGGAGCCTTCCTTCACCCCTCCCTCCCCCCCGCCCTTCCCA ACGTCCGGCACGTCATGCACCGGGTCCAGGCGGAGGAAGCGAGGGAAGTC TTGAAGGAGGAAGGGCCTTTCCACCTTGTCTGCGTAGATGTGAATCTGTT CCCACAGGTTAGAAGAAGAGGAGGGAGGGAGGGAGGGAGAGGTGTGCAGT CTTCTGTACGCATTTGGTAATTATAATATTTGACGCATCGACTCCCATCT CTCCCTCCTTCTCTTCCTCCTTCTCTT back to topprotein sequence of NO11G00190.3 >NO11G00190.3-protein ID=NO11G00190.3-protein|Name=NO11G00190.3|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp MLMQGRPVAMAPQSSSPSRTSQHVQPQPQHHLKHANDDDDCDAFATFSTR PITLAPIFPLIWAIEVEPTQLCRISSYLPSAPFPSSSSSSSSFSSSSSPS SSSHSSTTKITDSSNHAPSSSPLPLPSTLPLAGCIANRAKAHSSCLLGAT YRMDDQSHLIPPSHQRHISRVFYVPNACGDIGWLAFSPELREALKKAKTS HLSASSASSSPSSSPSFCLKISAFPKTMELQIGEVFLTASASSGCRLEEG DLSPSASQATHILHVVHSPDWSPLFYFGLTQSHPSAISSSSLPPSRPPSF PSFAPPTFDKLHSSSLPPVSRAYYKMKEVWEEYLDEEGREGVRWKAERKG LDVGASPGGWTQYLR* back to topmRNA from alignment at chr11:79722..81873- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G00190.3 ID=NO11G00190.3|Name=NO11G00190.3|organism=Nannochloropsis oceanica|type=mRNA|length=2152bp|location=Sequence derived from alignment at chr11:79722..81873- (Nannochloropsis oceanica) CCAAATGGAAAGACTGAGAGTGTGATAAATCGAAATACTTAATGGATCGT
ATAACGGATTGTGGGGCAGAGAACCTGCCATAGATTTTACGTCCACACGG
AAATGCATTGCCAAGACACGCCCAAAGACACAAGATTCTCCTCACACCTT
CGTGCTTGTTTACACGCTCTACTGATGTATTGATCCCTTACGTATCAATC
ATGTTGATGCAGGGACGGCCAGTGGCAATGGCCCCACAGTCGTCATCGCC
ATCACGGACAAGCCAGCATGTTCAACCGCAACCCCAGCACCATCTCAAGC
ATGCTAACGACGACGACGATTGTGATGCCTTTGCTACTTTCAGCACACGT
CCTATCACCTTGGCCCCGATCTTTCCCTTAATTTGGGCGATTGAGGTGGA
ACCAACGCAGCTATGTCGCATCTCCTCCTACCTGCCGTCTGCTCCTTTCC
CCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCCCCTCC
TCCTCCTCCCACTCATCTACCACCAAAATCACGGATAGCAGCAATCATGC
CCCCTCCTCCTCACCTTTGCCACTACCAAGCACTCTTCCTCTGGCTGGAT
GCATTGCCAACCGCGCGAAAGCCCACTCCAGCTGCCTGTTGGGGGCCACC
TACCGCATGGATGATCAAAGCCACCTCATCCCTCCCTCGCACCAACGACA
CATCAGTCGGGTGTTTTACGTACCGAATGCCTGTGGAGATATTGGCTGGT
TGGCCTTCAGTCCCGAGCTACGGGAGGCGCTTAAGAAGGCGAAGACGAGG
TAGGGAGGGAGGGAAGAAGGGAGGGAGGAAAGGATGGAGGGAGGAAAGGA
TGGAGGGAAGGAGGGGGACGGAAGGGGGAAGGAAATGACTATCGTTTATC
ATCTCAGCCGACCTTTTAACCCACTCTCACACTACCCTCCTTTCCCCGTC
GCCTTTGATACGCCCCTTTCCCCGTCCCTCCCTCCAGTCATCTTTCTGCT
TCTTCCGCCTCCTCCTCCCCCTCCTCCTCTCCCTCCTTCTGCCTCAAAAT
CTCCGCCTTCCCCAAAACAATGGAGCTTCAAATCGGTGAAGTGTTTCTCA
CAGCCTCAGCTTCCTCTGGCTGTCGGCTCGAGGAAGGCGACCTTTCTCCT
TCTGCATCCCAAGCCACGCATATACTCCACGTTGTGCATTCGCCCGGTGA
GGAGGAAGGAAGGAAGGGAGGGAGGGGGCAGGGGTGGCTCAGCAACGAGT
CGTATCGTCACATTTTCTGAATCACTCTTCTAATTGCGCTTTCTTCCCTT
ATATCCCTCCTGGCCCCTGACCAATACACACAGATTGGAGTCCCTTGTTC
TACTTCGGCCTGACCCAGAGCCACCCCTCGGCGATCTCCTCGTCCTCCCT
CCCTCCCTCCCGCCCGCCCTCCTTCCCTTCCTTCGCACCCCCCACATTCG
ACAAGCTGCACTCCTCCTCCCTTCCTCCCGTCTCTCGCGCGTATTACAAA
ATGAAGGAGGTTTGGGAGGAGTACCTGGATGAGGAAGGGAGGGAGGGCGT
GCGGTGGAAGGCCGAGAGGAAGGGTTTGGATGTGGGGGCATCGCCTGGGG
GATGGACGCAGTACTTGAGGTGAGGGAAGGAAGGAGGGAGGGAGGGAGGG
AGTGTGATAGAGTGTCGTTGCTACCACAGAGAGGGAGAGACGGAGGGAGG
GAGGGACGGAGGGAGGGAGGGACGGAGGGAAAGCAAGAAGCGGGAAGATG
ACGTTAAAAAAAGTGGTTGGGCTGTAGTAACTCAACTGCCTTGTCCCTCC
CTCTCTCCCTCCCTTCCTACCTCACTCCCTCCCTCCTTCCCTCCCCTTCA
ATAGCGACAAGCTATTTCGCGTTATCGCCGTAGACGGAGCCTTCCTTCAC
CCCTCCCTCCCCCCCGCCCTTCCCAACGTCCGGCACGTCATGCACCGGGT
CCAGGCGGAGGAAGCGAGGGAAGTCTTGAAGGAGGAAGGGCCTTTCCACC
TTGTCTGCGTAGATGTGAATCTGTTCCCACAGGTTAGAAGAAGAGGAGGG
AGGGAGGGAGGGAGAGGTGTGCAGTCTTCTGTACGCATTTGGTAATTATA
ATATTTGACGCATCGACTCCCATCTCTCCCTCCTTCTCTTCCTCCTTCTC
TT back to topCoding sequence (CDS) from alignment at chr11:79722..81873- >NO11G00190.3 ID=NO11G00190.3|Name=NO11G00190.3|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr11:79722..81873- (Nannochloropsis oceanica) ATGTTGATGCAGGGACGGCCAGTGGCAATGGCCCCACAGTCGTCATCGCC ATCACGGACAAGCCAGCATGTTCAACCGCAACCCCAGCACCATCTCAAGC ATGCTAACGACGACGACGATTGTGATGCCTTTGCTACTTTCAGCACACGT CCTATCACCTTGGCCCCGATCTTTCCCTTAATTTGGGCGATTGAGGTGGA ACCAACGCAGCTATGTCGCATCTCCTCCTACCTGCCGTCTGCTCCTTTCC CCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCCCCTCC TCCTCCTCCCACTCATCTACCACCAAAATCACGGATAGCAGCAATCATGC CCCCTCCTCCTCACCTTTGCCACTACCAAGCACTCTTCCTCTGGCTGGAT GCATTGCCAACCGCGCGAAAGCCCACTCCAGCTGCCTGTTGGGGGCCACC TACCGCATGGATGATCAAAGCCACCTCATCCCTCCCTCGCACCAACGACA CATCAGTCGGGTGTTTTACGTACCGAATGCCTGTGGAGATATTGGCTGGT TGGCCTTCAGTCCCGAGCTACGGGAGGCGCTTAAGAAGGCGAAGACGAGT CATCTTTCTGCTTCTTCCGCCTCCTCCTCCCCCTCCTCCTCTCCCTCCTT CTGCCTCAAAATCTCCGCCTTCCCCAAAACAATGGAGCTTCAAATCGGTG AAGTGTTTCTCACAGCCTCAGCTTCCTCTGGCTGTCGGCTCGAGGAAGGC GACCTTTCTCCTTCTGCATCCCAAGCCACGCATATACTCCACGTTGTGCA TTCGCCCGATTGGAGTCCCTTGTTCTACTTCGGCCTGACCCAGAGCCACC CCTCGGCGATCTCCTCGTCCTCCCTCCCTCCCTCCCGCCCGCCCTCCTTC CCTTCCTTCGCACCCCCCACATTCGACAAGCTGCACTCCTCCTCCCTTCC TCCCGTCTCTCGCGCGTATTACAAAATGAAGGAGGTTTGGGAGGAGTACC TGGATGAGGAAGGGAGGGAGGGCGTGCGGTGGAAGGCCGAGAGGAAGGGT TTGGATGTGGGGGCATCGCCTGGGGGATGGACGCAGTACTTGAGGTGA back to top
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