Analysis

Name Program Source
BLAST analysis for N. gaditana B-31 blastp NagaB31-proteins
BLASTP analysis of N. oceanica IMET1 genes diamond IMET1v2.protein-noStar.fa
Gene prediction for N. gaditana B-31 GCA_000569095.1_NagaB31_1.0 GCA_000569095.1_NagaB31_1.0
Gene prediction for N. oceanica CCMP1779 JGI Annotation Pipeline Nanoce1779_2
Gene prediction for N. oceanica IMET1 BRAKER1, PASA2 de novo, RNA-seq
Gene prediction for N. salina CCMP1776 (version 2) augustus augustus
Gennome assembly for N. gaditana B-31 Newbler & SCAMPI 454; SOLiD; ~17X
Gennome assembly for N. gaditana CCMP1894 HGAP PacBio, ~288.0X
Gennome assembly for N. gaditana CCMP526 Newbler & Velvet 454 GS FLX Titanium; Illumina GA IIx; ~230X
Gennome assembly for N. gaditana CCMP527 Velvet Illumina GA IIx, ~30X
Gennome assembly for N. granulata CCMP529 Newbler Illumina GAIIx, ~72.0X, ASM433540v1
Gennome assembly for N. limnetica CCMP505 Velvet Illumina GA IIx, ~30X, ASM161422v1
Gennome assembly for N. oceanica BR2 pomoxis, Canu, Flye GCA_009014725.1_ASM901472v1
Gennome assembly for N. oceanica CCMP1779 Falcon PacBio, ~108.51X
Gennome assembly for N. oceanica CCMP531 Newbler Illumina GAIIx, ~70X
Gennome assembly for N. oceanica IMET1 (version 2) PBcR, Quiver, FinisherSC, Hi-C PacBio, Hi-C
Gennome assembly for N. oceanica KB1 pomoxis, Canu, Flye GCA_009014695.1_ASM901469v1
Gennome assembly for N. oceanica LAMB0001 Soapdenovo Illumina GA IIx, ~130X
Gennome assembly for N. oceanica LAMB2011 Canu PacBio Sequel, ~113X
Gennome assembly for N. oculata CCMP525 Newbler Illumina GAIIx, ~56.0X, ASM433545v1