|
Gennome assembly for N. oceanica IMET1 (version 2) |
PBcR, Quiver, FinisherSC, Hi-C |
PacBio, Hi-C |
|
Gennome assembly for N. oceanica KB1 |
pomoxis, Canu, Flye |
GCA_009014695.1_ASM901469v1 |
|
Gennome assembly for N. oceanica LAMB0001 |
Soapdenovo |
Illumina GA IIx, ~130X |
|
Gennome assembly for N. oceanica LAMB2011 |
Canu |
PacBio Sequel, ~113X |
|
Gennome assembly for N. oculata CCMP525 |
Newbler |
Illumina GAIIx, ~56.0X, ASM433545v1 |
|
Gennome assembly for N. salina CCMP1776 |
Velvet |
Illumina GA IIx, ~30X, ASM161424v1 |
|
Gennome assembly for N. salina CCMP537 |
Newbler |
Illumina GAIIx, ~108.0X, ASM433546v1 |
|
Gennome assembly for Vischeria sp. C74 |
unpublished |
Vischeria_C74_genome_v1.fasta |
|
Genome assembly for N. salina CCMP1776 (version 2) |
HGAP3, SSPACE |
PacBio Sequel 100x 4G, illumina PE |
|
GO annotation for IMET1v2 genes |
BLAST2GO |
IMET1v2_genes.gaf |
|
GO annotation for N. gaditana B31 |
Blast2GO |
NgB31_proteins |
|
GO annotation for N. oceanica CCMP1779 v2 |
JGI Nanoce1779_2 |
JGI Nanoce1779_2 |
|
GO annotation for N. salina CCMP1776 v2 |
BLAST2GO, InterProScan |
Gene model of N. salina CCMP1776 v2 |
|
GSE139615 |
nf-core/rnaseq |
RNA-seq, Red/Blue/White, GSE139615 |
|
GSE149904 |
nfcore/rnaseq |
RNA-seq, phosphate deprivation, GSE149904 |
|
GSE164714 |
nfcore/rnaseq |
RNA-seq, blue/red light |
|
GSE178672 |
nf-core/rnaseq |
RNA-seq, NO06G02500/NO08G00280 knockout mutant |
|
Homology annotation for N. oceanica IMET1 |
diamond blastp |
IMET1v2.protein.fa |
|
InterPro analysis for N. gaditana B-31 |
InterProScan |
NgB31_proteins |
|
InterPro analysis for N. oceanica IMET1 |
interproscan |
IMET1v2.protein-noStar.fa |