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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:78975..81873 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G00190.1 vs.
Match: EWM25206.1 (ribosomal rna methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 545.8 bits (1405), Expect = 1.400e-151 Identity = 315/544 (57.90%), Postives = 386/544 (70.96%), Query Frame = 0
Query: 10 MAPQSSSPSRTSQHVQPQ---PQHHLKHANDD-----DDCDAFATFSTRPITLAPIFPLIWAIEVEPTQLCRISSYLPSAPFPSSSSSS-----SSFSSSSSPSSSSHSSTTKITDSSNHA--PSSSP--LPLP------------STLPLAGCIANRAKAHSSCLLGATYRMDDQSHLIPPSHQRHISRVFYVPNACGDIGWLAFSPELREALKKAKTSHLSASSASSSPSSSPSFCLKISAFPKTMELQIGEVFLTASASSGCRLEEGDLSPSASQATHILHVVHSPDWSPLFYFGLTQSHPSAISSSSLPPSRPPSFPSFAPPTFDKL-HSSSLPPVSRAYYKMKEVWEEYLDEE---GREGVRWKAERKGLDVGASPGGWTQYLSDKLFRVIAVDGAFLHPSLPPALPNVRHVMHRVQAEEAREVLKEEGPFHLVCVDVNLFPQVAADLVLQHVFPFMAHHSLLILTLKFPRIPTGPRLHKSLRDLERIWAEDPHIYCRAS--KEEGKEGGKER-VMMRLLWLHANSPKERTVITWVHRR 518
+ P +++ R QHV+P P+H D+ A ST+PI L P+FP +WA EV +Q+ R+ SYLP+A FPS+ + + + + +SSP + S + +SN PSS P P+P ST PLAGCIA+R+ H+SCLLGA YR+DD + LIP H+R+I+R FYVP AC D+GW+AFSPELR+ALK A++S S SFCLKISAFPK ME+ IGE+ LTA + GCRLEE +LSPSASQA+H+LHVVHSP+WSPLFY+GLTQSH S +S PP PSF SF PP+F+K SSSLPPVSRAY+KM+E+WEE L+E G E WK +RK LDVGASPGGWTQYLSDKL +V+AVDGA LHPSL P+L NVRHV +R+QAEEA EVLKEEGPFHLVCVD+NLFPQ AADL+LQHVFP +AHH+L+ILTLKFPR PTG RL K+LRDLERIWAEDP IYCR+S +EEG +++ ++RLLWLHANS ERTVITWVHRR
Sbjct: 4 LLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPA-LIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSS------------LSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSH-SLTGPTSAPP---PSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYLSDKLSQVVAVDGASLHPSLLPSLSNVRHVPYRIQAEEATEVLKEEGPFHLVCVDINLFPQGAADLILQHVFPHVAHHALVILTLKFPRKPTGARLQKALRDLERIWAEDPEIYCRSSRKREEGHRDDEDKSEVLRLLWLHANSSHERTVITWVHRR 530
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G00190.1 ID=NO11G00190.1|Name=NO11G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1816bp CCAAATGGAAAGACTGAGAGTGTGATAAATCGAAATACTTAATGGATCGT ATAACGGATTGTGGGGCAGAGAACCTGCCATAGATTTTACGTCCACACGG AAATGCATTGCCAAGACACGCCCAAAGACACAAGATTCTCCTCACACCTT CGTGCTTGTTTACACGCTCTACTGATGTATTGATCCCTTACGTATCAATC ATGTTGATGCAGGGACGGCCAGTGGCAATGGCCCCACAGTCGTCATCGCC ATCACGGACAAGCCAGCATGTTCAACCGCAACCCCAGCACCATCTCAAGC ATGCTAACGACGACGACGATTGTGATGCCTTTGCTACTTTCAGCACACGT CCTATCACCTTGGCCCCGATCTTTCCCTTAATTTGGGCGATTGAGGTGGA ACCAACGCAGCTATGTCGCATCTCCTCCTACCTGCCGTCTGCTCCTTTCC CCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCCCCTCC TCCTCCTCCCACTCATCTACCACCAAAATCACGGATAGCAGCAATCATGC CCCCTCCTCCTCACCTTTGCCACTACCAAGCACTCTTCCTCTGGCTGGAT GCATTGCCAACCGCGCGAAAGCCCACTCCAGCTGCCTGTTGGGGGCCACC TACCGCATGGATGATCAAAGCCACCTCATCCCTCCCTCGCACCAACGACA CATCAGTCGGGTGTTTTACGTACCGAATGCCTGTGGAGATATTGGCTGGT TGGCCTTCAGTCCCGAGCTACGGGAGGCGCTTAAGAAGGCGAAGACGAGT CATCTTTCTGCTTCTTCCGCCTCCTCCTCCCCCTCCTCCTCTCCCTCCTT CTGCCTCAAAATCTCCGCCTTCCCCAAAACAATGGAGCTTCAAATCGGTG AAGTGTTTCTCACAGCCTCAGCTTCCTCTGGCTGTCGGCTCGAGGAAGGC GACCTTTCTCCTTCTGCATCCCAAGCCACGCATATACTCCACGTTGTGCA TTCGCCCGATTGGAGTCCCTTGTTCTACTTCGGCCTGACCCAGAGCCACC CCTCGGCGATCTCCTCGTCCTCCCTCCCTCCCTCCCGCCCGCCCTCCTTC CCTTCCTTCGCACCCCCCACATTCGACAAGCTGCACTCCTCCTCCCTTCC TCCCGTCTCTCGCGCGTATTACAAAATGAAGGAGGTTTGGGAGGAGTACC TGGATGAGGAAGGGAGGGAGGGCGTGCGGTGGAAGGCCGAGAGGAAGGGT TTGGATGTGGGGGCATCGCCTGGGGGATGGACGCAGTACTTGAGCGACAA GCTATTTCGCGTTATCGCCGTAGACGGAGCCTTCCTTCACCCCTCCCTCC CCCCCGCCCTTCCCAACGTCCGGCACGTCATGCACCGGGTCCAGGCGGAG GAAGCGAGGGAAGTCTTGAAGGAGGAAGGGCCTTTCCACCTTGTCTGCGT AGATGTGAATCTGTTCCCACAGGTTGCGGCCGATCTCGTCTTGCAGCACG TCTTCCCCTTCATGGCCCATCACTCCCTTCTCATCCTCACCCTTAAGTTC CCACGCATACCCACGGGCCCTCGCCTTCACAAGAGCCTGCGTGACTTGGA ACGGATCTGGGCAGAAGACCCCCATATCTACTGCCGGGCCAGTAAGGAGG AAGGGAAGGAGGGAGGGAAGGAACGGGTGATGATGCGTTTGTTGTGGCTG CACGCCAACTCACCAAAAGAACGGACGGTTATAACGTGGGTGCATCGCCG GTAGAGGATGCTGGATTCATAAAGAACCAACACTGAAAGTACTCTCTATT TTATCTTTCGTTCATC back to topprotein sequence of NO11G00190.1 >NO11G00190.1-protein ID=NO11G00190.1-protein|Name=NO11G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp MLMQGRPVAMAPQSSSPSRTSQHVQPQPQHHLKHANDDDDCDAFATFSTR PITLAPIFPLIWAIEVEPTQLCRISSYLPSAPFPSSSSSSSSFSSSSSPS SSSHSSTTKITDSSNHAPSSSPLPLPSTLPLAGCIANRAKAHSSCLLGAT YRMDDQSHLIPPSHQRHISRVFYVPNACGDIGWLAFSPELREALKKAKTS HLSASSASSSPSSSPSFCLKISAFPKTMELQIGEVFLTASASSGCRLEEG DLSPSASQATHILHVVHSPDWSPLFYFGLTQSHPSAISSSSLPPSRPPSF PSFAPPTFDKLHSSSLPPVSRAYYKMKEVWEEYLDEEGREGVRWKAERKG LDVGASPGGWTQYLSDKLFRVIAVDGAFLHPSLPPALPNVRHVMHRVQAE EAREVLKEEGPFHLVCVDVNLFPQVAADLVLQHVFPFMAHHSLLILTLKF PRIPTGPRLHKSLRDLERIWAEDPHIYCRASKEEGKEGGKERVMMRLLWL HANSPKERTVITWVHRR* back to topmRNA from alignment at chr11:78975..81873- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G00190.1 ID=NO11G00190.1|Name=NO11G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2899bp|location=Sequence derived from alignment at chr11:78975..81873- (Nannochloropsis oceanica) CCAAATGGAAAGACTGAGAGTGTGATAAATCGAAATACTTAATGGATCGT
ATAACGGATTGTGGGGCAGAGAACCTGCCATAGATTTTACGTCCACACGG
AAATGCATTGCCAAGACACGCCCAAAGACACAAGATTCTCCTCACACCTT
CGTGCTTGTTTACACGCTCTACTGATGTATTGATCCCTTACGTATCAATC
ATGTTGATGCAGGGACGGCCAGTGGCAATGGCCCCACAGTCGTCATCGCC
ATCACGGACAAGCCAGCATGTTCAACCGCAACCCCAGCACCATCTCAAGC
ATGCTAACGACGACGACGATTGTGATGCCTTTGCTACTTTCAGCACACGT
CCTATCACCTTGGCCCCGATCTTTCCCTTAATTTGGGCGATTGAGGTGGA
ACCAACGCAGCTATGTCGCATCTCCTCCTACCTGCCGTCTGCTCCTTTCC
CCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCCCCTCC
TCCTCCTCCCACTCATCTACCACCAAAATCACGGATAGCAGCAATCATGC
CCCCTCCTCCTCACCTTTGCCACTACCAAGCACTCTTCCTCTGGCTGGAT
GCATTGCCAACCGCGCGAAAGCCCACTCCAGCTGCCTGTTGGGGGCCACC
TACCGCATGGATGATCAAAGCCACCTCATCCCTCCCTCGCACCAACGACA
CATCAGTCGGGTGTTTTACGTACCGAATGCCTGTGGAGATATTGGCTGGT
TGGCCTTCAGTCCCGAGCTACGGGAGGCGCTTAAGAAGGCGAAGACGAGG
TAGGGAGGGAGGGAAGAAGGGAGGGAGGAAAGGATGGAGGGAGGAAAGGA
TGGAGGGAAGGAGGGGGACGGAAGGGGGAAGGAAATGACTATCGTTTATC
ATCTCAGCCGACCTTTTAACCCACTCTCACACTACCCTCCTTTCCCCGTC
GCCTTTGATACGCCCCTTTCCCCGTCCCTCCCTCCAGTCATCTTTCTGCT
TCTTCCGCCTCCTCCTCCCCCTCCTCCTCTCCCTCCTTCTGCCTCAAAAT
CTCCGCCTTCCCCAAAACAATGGAGCTTCAAATCGGTGAAGTGTTTCTCA
CAGCCTCAGCTTCCTCTGGCTGTCGGCTCGAGGAAGGCGACCTTTCTCCT
TCTGCATCCCAAGCCACGCATATACTCCACGTTGTGCATTCGCCCGGTGA
GGAGGAAGGAAGGAAGGGAGGGAGGGGGCAGGGGTGGCTCAGCAACGAGT
CGTATCGTCACATTTTCTGAATCACTCTTCTAATTGCGCTTTCTTCCCTT
ATATCCCTCCTGGCCCCTGACCAATACACACAGATTGGAGTCCCTTGTTC
TACTTCGGCCTGACCCAGAGCCACCCCTCGGCGATCTCCTCGTCCTCCCT
CCCTCCCTCCCGCCCGCCCTCCTTCCCTTCCTTCGCACCCCCCACATTCG
ACAAGCTGCACTCCTCCTCCCTTCCTCCCGTCTCTCGCGCGTATTACAAA
ATGAAGGAGGTTTGGGAGGAGTACCTGGATGAGGAAGGGAGGGAGGGCGT
GCGGTGGAAGGCCGAGAGGAAGGGTTTGGATGTGGGGGCATCGCCTGGGG
GATGGACGCAGTACTTGAGGTGAGGGAAGGAAGGAGGGAGGGAGGGAGGG
AGTGTGATAGAGTGTCGTTGCTACCACAGAGAGGGAGAGACGGAGGGAGG
GAGGGACGGAGGGAGGGAGGGACGGAGGGAAAGCAAGAAGCGGGAAGATG
ACGTTAAAAAAAGTGGTTGGGCTGTAGTAACTCAACTGCCTTGTCCCTCC
CTCTCTCCCTCCCTTCCTACCTCACTCCCTCCCTCCTTCCCTCCCCTTCA
ATAGCGACAAGCTATTTCGCGTTATCGCCGTAGACGGAGCCTTCCTTCAC
CCCTCCCTCCCCCCCGCCCTTCCCAACGTCCGGCACGTCATGCACCGGGT
CCAGGCGGAGGAAGCGAGGGAAGTCTTGAAGGAGGAAGGGCCTTTCCACC
TTGTCTGCGTAGATGTGAATCTGTTCCCACAGGTTAGAAGAAGAGGAGGG
AGGGAGGGAGGGAGAGGTGTGCAGTCTTCTGTACGCATTTGGTAATTATA
ATATTTGACGCATCGACTCCCATCTCTCCCTCCTTCTCTTCCTCCTTCTC
TTCCTCCTTCTCTTCCTCCTTCTCTTCCTCCTTCCCTCCCTCCTTCCCTC
CCTTCGACAGGTTGCGGCCGATCTCGTCTTGCAGCACGTCTTCCCCTTCA
TGGCCCATCACTCCCTTCTCATCCTCACCCTTAAGTTCCCACGCATACCC
ACGGGCCCTCGGTACGTCGGTCCTCCCTCCCCCCCTGCCTGCTTGTTTTG
TTGCATTTCTTGTGTTGTCTTTCCTCTTTTCCCTCATTTCCCTCGCTCTC
TCTCTCCCTCACAGTAATAAAGGCCTCGACTTCACTCCTTTCCACGAGTT
CTCCACCTCCTCTCATTCTCCTCACATAAATCCTCTCCCCCCCCCTGTCC
TCCCTCTCTTCCTCCACTCCTCCCTCCAACTCCTCTCATTCTCCCTGAGA
TGATCCCTCCCTCTCCTCCTTTCCTCTCACTCTCCCTCCTCCCCTTCTTT
CATCCTCCCTCACTTAATACATGCCTTCTCTCTTTCCCTCCTTCCGCCTC
ATAAAGCCTTCACAAGAGCCTGCGTGACTTGGAACGGATCTGGGCAGAAG
ACCCCCATATCTACTGCCGGGCCAGTAAGGAGGAAGGGAAGGAGGGAGGG
AAGGAACGGGTGATGATGCGTTTGTTGTGGCTGCACGCCAACTCACCAAA
AGAACGGACGGTTATAACGTGGGTGCATCGCCGGTAGAGGATGCTGGATT
CATAAAGAACCAACACTGAAAGTACTCTCTATTTTATCTTTCGTTCATC back to topCoding sequence (CDS) from alignment at chr11:78975..81873- >NO11G00190.1 ID=NO11G00190.1|Name=NO11G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=1554bp|location=Sequence derived from alignment at chr11:78975..81873- (Nannochloropsis oceanica) ATGTTGATGCAGGGACGGCCAGTGGCAATGGCCCCACAGTCGTCATCGCC ATCACGGACAAGCCAGCATGTTCAACCGCAACCCCAGCACCATCTCAAGC ATGCTAACGACGACGACGATTGTGATGCCTTTGCTACTTTCAGCACACGT CCTATCACCTTGGCCCCGATCTTTCCCTTAATTTGGGCGATTGAGGTGGA ACCAACGCAGCTATGTCGCATCTCCTCCTACCTGCCGTCTGCTCCTTTCC CCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCCCCTCC TCCTCCTCCCACTCATCTACCACCAAAATCACGGATAGCAGCAATCATGC CCCCTCCTCCTCACCTTTGCCACTACCAAGCACTCTTCCTCTGGCTGGAT GCATTGCCAACCGCGCGAAAGCCCACTCCAGCTGCCTGTTGGGGGCCACC TACCGCATGGATGATCAAAGCCACCTCATCCCTCCCTCGCACCAACGACA CATCAGTCGGGTGTTTTACGTACCGAATGCCTGTGGAGATATTGGCTGGT TGGCCTTCAGTCCCGAGCTACGGGAGGCGCTTAAGAAGGCGAAGACGAGT CATCTTTCTGCTTCTTCCGCCTCCTCCTCCCCCTCCTCCTCTCCCTCCTT CTGCCTCAAAATCTCCGCCTTCCCCAAAACAATGGAGCTTCAAATCGGTG AAGTGTTTCTCACAGCCTCAGCTTCCTCTGGCTGTCGGCTCGAGGAAGGC GACCTTTCTCCTTCTGCATCCCAAGCCACGCATATACTCCACGTTGTGCA TTCGCCCGATTGGAGTCCCTTGTTCTACTTCGGCCTGACCCAGAGCCACC CCTCGGCGATCTCCTCGTCCTCCCTCCCTCCCTCCCGCCCGCCCTCCTTC CCTTCCTTCGCACCCCCCACATTCGACAAGCTGCACTCCTCCTCCCTTCC TCCCGTCTCTCGCGCGTATTACAAAATGAAGGAGGTTTGGGAGGAGTACC TGGATGAGGAAGGGAGGGAGGGCGTGCGGTGGAAGGCCGAGAGGAAGGGT TTGGATGTGGGGGCATCGCCTGGGGGATGGACGCAGTACTTGAGCGACAA GCTATTTCGCGTTATCGCCGTAGACGGAGCCTTCCTTCACCCCTCCCTCC CCCCCGCCCTTCCCAACGTCCGGCACGTCATGCACCGGGTCCAGGCGGAG GAAGCGAGGGAAGTCTTGAAGGAGGAAGGGCCTTTCCACCTTGTCTGCGT AGATGTGAATCTGTTCCCACAGGTTGCGGCCGATCTCGTCTTGCAGCACG TCTTCCCCTTCATGGCCCATCACTCCCTTCTCATCCTCACCCTTAAGTTC CCACGCATACCCACGGGCCCTCGCCTTCACAAGAGCCTGCGTGACTTGGA ACGGATCTGGGCAGAAGACCCCCATATCTACTGCCGGGCCAGTAAGGAGG AAGGGAAGGAGGGAGGGAAGGAACGGGTGATGATGCGTTTGTTGTGGCTG CACGCCAACTCACCAAAAGAACGGACGGTTATAACGTGGGTGCATCGCCG GTAG back to top
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