NO11G00190.1, NO11G00190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00190.1
Unique NameNO11G00190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1816
Alignment locationchr11:78975..81873 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:78975..81873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G00190.1 vs.
Match: EWM25206.1 (ribosomal rna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 545.8 bits (1405), Expect = 1.400e-151
Identity = 315/544 (57.90%), Postives = 386/544 (70.96%), Query Frame = 0
Query:   10 MAPQSSSPSRTSQHVQPQ---PQHHLKHANDD-----DDCDAFATFSTRPITLAPIFPLIWAIEVEPTQLCRISSYLPSAPFPSSSSSS-----SSFSSSSSPSSSSHSSTTKITDSSNHA--PSSSP--LPLP------------STLPLAGCIANRAKAHSSCLLGATYRMDDQSHLIPPSHQRHISRVFYVPNACGDIGWLAFSPELREALKKAKTSHLSASSASSSPSSSPSFCLKISAFPKTMELQIGEVFLTASASSGCRLEEGDLSPSASQATHILHVVHSPDWSPLFYFGLTQSHPSAISSSSLPPSRPPSFPSFAPPTFDKL-HSSSLPPVSRAYYKMKEVWEEYLDEE---GREGVRWKAERKGLDVGASPGGWTQYLSDKLFRVIAVDGAFLHPSLPPALPNVRHVMHRVQAEEAREVLKEEGPFHLVCVDVNLFPQVAADLVLQHVFPFMAHHSLLILTLKFPRIPTGPRLHKSLRDLERIWAEDPHIYCRAS--KEEGKEGGKER-VMMRLLWLHANSPKERTVITWVHRR 518
            + P +++  R  QHV+P    P+H                D+ A  ST+PI L P+FP +WA EV  +Q+ R+ SYLP+A FPS+ + +     +  + +SSP   + S +     +SN    PSS P   P+P            ST PLAGCIA+R+  H+SCLLGA YR+DD + LIP  H+R+I+R FYVP AC D+GW+AFSPELR+ALK A++S             S SFCLKISAFPK ME+ IGE+ LTA  + GCRLEE +LSPSASQA+H+LHVVHSP+WSPLFY+GLTQSH S    +S PP   PSF SF PP+F+K   SSSLPPVSRAY+KM+E+WEE L+E    G E   WK +RK LDVGASPGGWTQYLSDKL +V+AVDGA LHPSL P+L NVRHV +R+QAEEA EVLKEEGPFHLVCVD+NLFPQ AADL+LQHVFP +AHH+L+ILTLKFPR PTG RL K+LRDLERIWAEDP IYCR+S  +EEG    +++  ++RLLWLHANS  ERTVITWVHRR
Sbjct:    4 LLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPA-LIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSS------------LSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSH-SLTGPTSAPP---PSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYLSDKLSQVVAVDGASLHPSLLPSLSNVRHVPYRIQAEEATEVLKEEGPFHLVCVDINLFPQGAADLILQHVFPHVAHHALVILTLKFPRKPTGARLQKALRDLERIWAEDPEIYCRSSRKREEGHRDDEDKSEVLRLLWLHANSSHERTVITWVHRR 530          
The following BLAST results are available for this feature:
BLAST of NO11G00190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25206.11.400e-15157.90ribosomal rna methyltransferase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00190NO11G00190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00190.1NO11G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00190.1.cds1NO11G00190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00190.1.cds2NO11G00190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00190.1.cds3NO11G00190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00190.1.cds4NO11G00190.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00190.1.cds5NO11G00190.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00190.1.cds6NO11G00190.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00190.1 ID=NO11G00190.1|Name=NO11G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1816bp
CCAAATGGAAAGACTGAGAGTGTGATAAATCGAAATACTTAATGGATCGT
ATAACGGATTGTGGGGCAGAGAACCTGCCATAGATTTTACGTCCACACGG
AAATGCATTGCCAAGACACGCCCAAAGACACAAGATTCTCCTCACACCTT
CGTGCTTGTTTACACGCTCTACTGATGTATTGATCCCTTACGTATCAATC
ATGTTGATGCAGGGACGGCCAGTGGCAATGGCCCCACAGTCGTCATCGCC
ATCACGGACAAGCCAGCATGTTCAACCGCAACCCCAGCACCATCTCAAGC
ATGCTAACGACGACGACGATTGTGATGCCTTTGCTACTTTCAGCACACGT
CCTATCACCTTGGCCCCGATCTTTCCCTTAATTTGGGCGATTGAGGTGGA
ACCAACGCAGCTATGTCGCATCTCCTCCTACCTGCCGTCTGCTCCTTTCC
CCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCCCCTCC
TCCTCCTCCCACTCATCTACCACCAAAATCACGGATAGCAGCAATCATGC
CCCCTCCTCCTCACCTTTGCCACTACCAAGCACTCTTCCTCTGGCTGGAT
GCATTGCCAACCGCGCGAAAGCCCACTCCAGCTGCCTGTTGGGGGCCACC
TACCGCATGGATGATCAAAGCCACCTCATCCCTCCCTCGCACCAACGACA
CATCAGTCGGGTGTTTTACGTACCGAATGCCTGTGGAGATATTGGCTGGT
TGGCCTTCAGTCCCGAGCTACGGGAGGCGCTTAAGAAGGCGAAGACGAGT
CATCTTTCTGCTTCTTCCGCCTCCTCCTCCCCCTCCTCCTCTCCCTCCTT
CTGCCTCAAAATCTCCGCCTTCCCCAAAACAATGGAGCTTCAAATCGGTG
AAGTGTTTCTCACAGCCTCAGCTTCCTCTGGCTGTCGGCTCGAGGAAGGC
GACCTTTCTCCTTCTGCATCCCAAGCCACGCATATACTCCACGTTGTGCA
TTCGCCCGATTGGAGTCCCTTGTTCTACTTCGGCCTGACCCAGAGCCACC
CCTCGGCGATCTCCTCGTCCTCCCTCCCTCCCTCCCGCCCGCCCTCCTTC
CCTTCCTTCGCACCCCCCACATTCGACAAGCTGCACTCCTCCTCCCTTCC
TCCCGTCTCTCGCGCGTATTACAAAATGAAGGAGGTTTGGGAGGAGTACC
TGGATGAGGAAGGGAGGGAGGGCGTGCGGTGGAAGGCCGAGAGGAAGGGT
TTGGATGTGGGGGCATCGCCTGGGGGATGGACGCAGTACTTGAGCGACAA
GCTATTTCGCGTTATCGCCGTAGACGGAGCCTTCCTTCACCCCTCCCTCC
CCCCCGCCCTTCCCAACGTCCGGCACGTCATGCACCGGGTCCAGGCGGAG
GAAGCGAGGGAAGTCTTGAAGGAGGAAGGGCCTTTCCACCTTGTCTGCGT
AGATGTGAATCTGTTCCCACAGGTTGCGGCCGATCTCGTCTTGCAGCACG
TCTTCCCCTTCATGGCCCATCACTCCCTTCTCATCCTCACCCTTAAGTTC
CCACGCATACCCACGGGCCCTCGCCTTCACAAGAGCCTGCGTGACTTGGA
ACGGATCTGGGCAGAAGACCCCCATATCTACTGCCGGGCCAGTAAGGAGG
AAGGGAAGGAGGGAGGGAAGGAACGGGTGATGATGCGTTTGTTGTGGCTG
CACGCCAACTCACCAAAAGAACGGACGGTTATAACGTGGGTGCATCGCCG
GTAGAGGATGCTGGATTCATAAAGAACCAACACTGAAAGTACTCTCTATT
TTATCTTTCGTTCATC
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protein sequence of NO11G00190.1

>NO11G00190.1-protein ID=NO11G00190.1-protein|Name=NO11G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MLMQGRPVAMAPQSSSPSRTSQHVQPQPQHHLKHANDDDDCDAFATFSTR
PITLAPIFPLIWAIEVEPTQLCRISSYLPSAPFPSSSSSSSSFSSSSSPS
SSSHSSTTKITDSSNHAPSSSPLPLPSTLPLAGCIANRAKAHSSCLLGAT
YRMDDQSHLIPPSHQRHISRVFYVPNACGDIGWLAFSPELREALKKAKTS
HLSASSASSSPSSSPSFCLKISAFPKTMELQIGEVFLTASASSGCRLEEG
DLSPSASQATHILHVVHSPDWSPLFYFGLTQSHPSAISSSSLPPSRPPSF
PSFAPPTFDKLHSSSLPPVSRAYYKMKEVWEEYLDEEGREGVRWKAERKG
LDVGASPGGWTQYLSDKLFRVIAVDGAFLHPSLPPALPNVRHVMHRVQAE
EAREVLKEEGPFHLVCVDVNLFPQVAADLVLQHVFPFMAHHSLLILTLKF
PRIPTGPRLHKSLRDLERIWAEDPHIYCRASKEEGKEGGKERVMMRLLWL
HANSPKERTVITWVHRR*
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mRNA from alignment at chr11:78975..81873-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00190.1 ID=NO11G00190.1|Name=NO11G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2899bp|location=Sequence derived from alignment at chr11:78975..81873- (Nannochloropsis oceanica)
CCAAATGGAAAGACTGAGAGTGTGATAAATCGAAATACTTAATGGATCGT ATAACGGATTGTGGGGCAGAGAACCTGCCATAGATTTTACGTCCACACGG AAATGCATTGCCAAGACACGCCCAAAGACACAAGATTCTCCTCACACCTT CGTGCTTGTTTACACGCTCTACTGATGTATTGATCCCTTACGTATCAATC ATGTTGATGCAGGGACGGCCAGTGGCAATGGCCCCACAGTCGTCATCGCC ATCACGGACAAGCCAGCATGTTCAACCGCAACCCCAGCACCATCTCAAGC ATGCTAACGACGACGACGATTGTGATGCCTTTGCTACTTTCAGCACACGT CCTATCACCTTGGCCCCGATCTTTCCCTTAATTTGGGCGATTGAGGTGGA ACCAACGCAGCTATGTCGCATCTCCTCCTACCTGCCGTCTGCTCCTTTCC CCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCCCCTCC TCCTCCTCCCACTCATCTACCACCAAAATCACGGATAGCAGCAATCATGC CCCCTCCTCCTCACCTTTGCCACTACCAAGCACTCTTCCTCTGGCTGGAT GCATTGCCAACCGCGCGAAAGCCCACTCCAGCTGCCTGTTGGGGGCCACC TACCGCATGGATGATCAAAGCCACCTCATCCCTCCCTCGCACCAACGACA CATCAGTCGGGTGTTTTACGTACCGAATGCCTGTGGAGATATTGGCTGGT TGGCCTTCAGTCCCGAGCTACGGGAGGCGCTTAAGAAGGCGAAGACGAGG TAGGGAGGGAGGGAAGAAGGGAGGGAGGAAAGGATGGAGGGAGGAAAGGA TGGAGGGAAGGAGGGGGACGGAAGGGGGAAGGAAATGACTATCGTTTATC ATCTCAGCCGACCTTTTAACCCACTCTCACACTACCCTCCTTTCCCCGTC GCCTTTGATACGCCCCTTTCCCCGTCCCTCCCTCCAGTCATCTTTCTGCT TCTTCCGCCTCCTCCTCCCCCTCCTCCTCTCCCTCCTTCTGCCTCAAAAT CTCCGCCTTCCCCAAAACAATGGAGCTTCAAATCGGTGAAGTGTTTCTCA CAGCCTCAGCTTCCTCTGGCTGTCGGCTCGAGGAAGGCGACCTTTCTCCT TCTGCATCCCAAGCCACGCATATACTCCACGTTGTGCATTCGCCCGGTGA GGAGGAAGGAAGGAAGGGAGGGAGGGGGCAGGGGTGGCTCAGCAACGAGT CGTATCGTCACATTTTCTGAATCACTCTTCTAATTGCGCTTTCTTCCCTT ATATCCCTCCTGGCCCCTGACCAATACACACAGATTGGAGTCCCTTGTTC TACTTCGGCCTGACCCAGAGCCACCCCTCGGCGATCTCCTCGTCCTCCCT CCCTCCCTCCCGCCCGCCCTCCTTCCCTTCCTTCGCACCCCCCACATTCG ACAAGCTGCACTCCTCCTCCCTTCCTCCCGTCTCTCGCGCGTATTACAAA ATGAAGGAGGTTTGGGAGGAGTACCTGGATGAGGAAGGGAGGGAGGGCGT GCGGTGGAAGGCCGAGAGGAAGGGTTTGGATGTGGGGGCATCGCCTGGGG GATGGACGCAGTACTTGAGGTGAGGGAAGGAAGGAGGGAGGGAGGGAGGG AGTGTGATAGAGTGTCGTTGCTACCACAGAGAGGGAGAGACGGAGGGAGG GAGGGACGGAGGGAGGGAGGGACGGAGGGAAAGCAAGAAGCGGGAAGATG ACGTTAAAAAAAGTGGTTGGGCTGTAGTAACTCAACTGCCTTGTCCCTCC CTCTCTCCCTCCCTTCCTACCTCACTCCCTCCCTCCTTCCCTCCCCTTCA ATAGCGACAAGCTATTTCGCGTTATCGCCGTAGACGGAGCCTTCCTTCAC CCCTCCCTCCCCCCCGCCCTTCCCAACGTCCGGCACGTCATGCACCGGGT CCAGGCGGAGGAAGCGAGGGAAGTCTTGAAGGAGGAAGGGCCTTTCCACC TTGTCTGCGTAGATGTGAATCTGTTCCCACAGGTTAGAAGAAGAGGAGGG AGGGAGGGAGGGAGAGGTGTGCAGTCTTCTGTACGCATTTGGTAATTATA ATATTTGACGCATCGACTCCCATCTCTCCCTCCTTCTCTTCCTCCTTCTC TTCCTCCTTCTCTTCCTCCTTCTCTTCCTCCTTCCCTCCCTCCTTCCCTC CCTTCGACAGGTTGCGGCCGATCTCGTCTTGCAGCACGTCTTCCCCTTCA TGGCCCATCACTCCCTTCTCATCCTCACCCTTAAGTTCCCACGCATACCC ACGGGCCCTCGGTACGTCGGTCCTCCCTCCCCCCCTGCCTGCTTGTTTTG TTGCATTTCTTGTGTTGTCTTTCCTCTTTTCCCTCATTTCCCTCGCTCTC TCTCTCCCTCACAGTAATAAAGGCCTCGACTTCACTCCTTTCCACGAGTT CTCCACCTCCTCTCATTCTCCTCACATAAATCCTCTCCCCCCCCCTGTCC TCCCTCTCTTCCTCCACTCCTCCCTCCAACTCCTCTCATTCTCCCTGAGA TGATCCCTCCCTCTCCTCCTTTCCTCTCACTCTCCCTCCTCCCCTTCTTT CATCCTCCCTCACTTAATACATGCCTTCTCTCTTTCCCTCCTTCCGCCTC ATAAAGCCTTCACAAGAGCCTGCGTGACTTGGAACGGATCTGGGCAGAAG ACCCCCATATCTACTGCCGGGCCAGTAAGGAGGAAGGGAAGGAGGGAGGG AAGGAACGGGTGATGATGCGTTTGTTGTGGCTGCACGCCAACTCACCAAA AGAACGGACGGTTATAACGTGGGTGCATCGCCGGTAGAGGATGCTGGATT CATAAAGAACCAACACTGAAAGTACTCTCTATTTTATCTTTCGTTCATC
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Coding sequence (CDS) from alignment at chr11:78975..81873-

>NO11G00190.1 ID=NO11G00190.1|Name=NO11G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=1554bp|location=Sequence derived from alignment at chr11:78975..81873- (Nannochloropsis oceanica)
ATGTTGATGCAGGGACGGCCAGTGGCAATGGCCCCACAGTCGTCATCGCC
ATCACGGACAAGCCAGCATGTTCAACCGCAACCCCAGCACCATCTCAAGC
ATGCTAACGACGACGACGATTGTGATGCCTTTGCTACTTTCAGCACACGT
CCTATCACCTTGGCCCCGATCTTTCCCTTAATTTGGGCGATTGAGGTGGA
ACCAACGCAGCTATGTCGCATCTCCTCCTACCTGCCGTCTGCTCCTTTCC
CCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCCCCTCC
TCCTCCTCCCACTCATCTACCACCAAAATCACGGATAGCAGCAATCATGC
CCCCTCCTCCTCACCTTTGCCACTACCAAGCACTCTTCCTCTGGCTGGAT
GCATTGCCAACCGCGCGAAAGCCCACTCCAGCTGCCTGTTGGGGGCCACC
TACCGCATGGATGATCAAAGCCACCTCATCCCTCCCTCGCACCAACGACA
CATCAGTCGGGTGTTTTACGTACCGAATGCCTGTGGAGATATTGGCTGGT
TGGCCTTCAGTCCCGAGCTACGGGAGGCGCTTAAGAAGGCGAAGACGAGT
CATCTTTCTGCTTCTTCCGCCTCCTCCTCCCCCTCCTCCTCTCCCTCCTT
CTGCCTCAAAATCTCCGCCTTCCCCAAAACAATGGAGCTTCAAATCGGTG
AAGTGTTTCTCACAGCCTCAGCTTCCTCTGGCTGTCGGCTCGAGGAAGGC
GACCTTTCTCCTTCTGCATCCCAAGCCACGCATATACTCCACGTTGTGCA
TTCGCCCGATTGGAGTCCCTTGTTCTACTTCGGCCTGACCCAGAGCCACC
CCTCGGCGATCTCCTCGTCCTCCCTCCCTCCCTCCCGCCCGCCCTCCTTC
CCTTCCTTCGCACCCCCCACATTCGACAAGCTGCACTCCTCCTCCCTTCC
TCCCGTCTCTCGCGCGTATTACAAAATGAAGGAGGTTTGGGAGGAGTACC
TGGATGAGGAAGGGAGGGAGGGCGTGCGGTGGAAGGCCGAGAGGAAGGGT
TTGGATGTGGGGGCATCGCCTGGGGGATGGACGCAGTACTTGAGCGACAA
GCTATTTCGCGTTATCGCCGTAGACGGAGCCTTCCTTCACCCCTCCCTCC
CCCCCGCCCTTCCCAACGTCCGGCACGTCATGCACCGGGTCCAGGCGGAG
GAAGCGAGGGAAGTCTTGAAGGAGGAAGGGCCTTTCCACCTTGTCTGCGT
AGATGTGAATCTGTTCCCACAGGTTGCGGCCGATCTCGTCTTGCAGCACG
TCTTCCCCTTCATGGCCCATCACTCCCTTCTCATCCTCACCCTTAAGTTC
CCACGCATACCCACGGGCCCTCGCCTTCACAAGAGCCTGCGTGACTTGGA
ACGGATCTGGGCAGAAGACCCCCATATCTACTGCCGGGCCAGTAAGGAGG
AAGGGAAGGAGGGAGGGAAGGAACGGGTGATGATGCGTTTGTTGTGGCTG
CACGCCAACTCACCAAAAGAACGGACGGTTATAACGTGGGTGCATCGCCG
GTAG
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Synonyms
Publications