scaffold_79, scaffold_79 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_79
Unique Name	scaffold_79
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	63996
Alignment location	jgi.p\|Nanoce1779_2\|412813:1..1864 -
Alignment location	jgi.p\|Nanoce1779_2\|412813:1..1864 -
Alignment location	CDS_10874:1335..1537 -
Alignment location	CDS_10874:559..836 -
Alignment location	CDS_10874:20..264 -
Alignment location	jgi.p\|Nanoce1779_2\|412832:3039..3707 -
Alignment location	jgi.p\|Nanoce1779_2\|412832:3039..3707 -
Alignment location	CDS_10876:3234..3599 -
Alignment location	jgi.p\|Nanoce1779_2\|413015:19150..21391 -
Alignment location	jgi.p\|Nanoce1779_2\|413015:19150..21391 -
Alignment location	CDS_10884:21013..21353 -
Alignment location	CDS_10884:20673..20781 -
Alignment location	CDS_10884:19450..20497 -
Alignment location	CDS_10884:19191..19309 -
Alignment location	jgi.p\|Nanoce1779_2\|534315:2384..3066 -
Alignment location	jgi.p\|Nanoce1779_2\|534315:2384..3066 -
Alignment location	CDS_10875:3011..3066 -
Alignment location	CDS_10875:2384..2780 -
Alignment location	jgi.p\|Nanoce1779_2\|570179:10632..11069 +
Alignment location	jgi.p\|Nanoce1779_2\|570179:10632..11069 +
Alignment location	CDS_10880:10632..11069 +
Alignment location	jgi.p\|Nanoce1779_2\|613841:11574..13327 -
Alignment location	jgi.p\|Nanoce1779_2\|613841:11574..13327 -
Alignment location	CDS_10881:13257..13306 -
Alignment location	CDS_10881:12860..13128 -
Alignment location	CDS_10881:12629..12779 -
Alignment location	CDS_10881:12467..12557 -
Alignment location	CDS_10881:12293..12396 -
Alignment location	CDS_10881:11953..12208 -
Alignment location	CDS_10881:11686..11844 -
Alignment location	jgi.p\|Nanoce1779_2\|613856:16917..19844 -
Alignment location	jgi.p\|Nanoce1779_2\|613856:16917..19844 -
Alignment location	CDS_10883:18335..18544 -
Alignment location	CDS_10883:17323..18171 -
Alignment location	CDS_10883:17076..17243 -
Alignment location	jgi.p\|Nanoce1779_2\|626456:14625..16802 +
Alignment location	jgi.p\|Nanoce1779_2\|626456:14625..16802 +
Alignment location	CDS_10882:15037..15133 +
Alignment location	CDS_10882:15226..16802 +
Alignment location	jgi.p\|Nanoce1779_2\|634421:3546..6598 +
Alignment location	jgi.p\|Nanoce1779_2\|634421:3546..6598 +
Alignment location	CDS_10877:3815..4123 +
Alignment location	CDS_10877:4287..4514 +
Alignment location	CDS_10877:4697..4849 +
Alignment location	CDS_10877:4999..6291 +
Alignment location	jgi.p\|Nanoce1779_2\|643707:22905..23315 +
Alignment location	jgi.p\|Nanoce1779_2\|643707:22905..23315 +
Alignment location	CDS_10885:22905..22946 +
Alignment location	CDS_10885:23130..23315 +
Alignment location	jgi.p\|Nanoce1779_2\|665154:7147..8835 -
Alignment location	jgi.p\|Nanoce1779_2\|665154:7147..8835 -
Alignment location	CDS_10878:7390..8775 -
Alignment location	jgi.p\|Nanoce1779_2\|675164:21715..33493 +
Alignment location	jgi.p\|Nanoce1779_2\|675164:21715..33493 +
Alignment location	CDS_10886:24015..24189 +
Alignment location	CDS_10886:24288..24473 +
Alignment location	CDS_10886:24645..25171 +
Alignment location	CDS_10886:25826..26126 +
Alignment location	CDS_10886:26436..26894 +
Alignment location	CDS_10886:27111..27557 +
Alignment location	CDS_10886:30520..30699 +
Alignment location	CDS_10886:30750..31265 +
Alignment location	CDS_10886:31352..31575 +
Alignment location	CDS_10886:31758..31907 +
Alignment location	jgi.p\|Nanoce1779_2\|412813:20..1537 -
Alignment location	jgi.p\|Nanoce1779_2\|412832:3234..3599 -
Alignment location	jgi.p\|Nanoce1779_2\|413015:19191..21353 -
Alignment location	jgi.p\|Nanoce1779_2\|534315:2384..3066 -
Alignment location	jgi.p\|Nanoce1779_2\|570179:10632..11069 +
Alignment location	jgi.p\|Nanoce1779_2\|613841:11686..13306 -
Alignment location	jgi.p\|Nanoce1779_2\|613856:17076..18544 -
Alignment location	jgi.p\|Nanoce1779_2\|626456:15037..16802 +
Alignment location	jgi.p\|Nanoce1779_2\|634421:3815..6291 +
Alignment location	jgi.p\|Nanoce1779_2\|643707:22905..23315 +
Alignment location	jgi.p\|Nanoce1779_2\|665154:7390..8775 -
Alignment location	jgi.p\|Nanoce1779_2\|675164:24015..31907 +
Alignment location	ncniL003:2..33493 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|412813	gene	jgi.p\|Nanoce1779_2\|412813:1..1864 -
jgi.p\|Nanoce1779_2\|412813	mRNA	jgi.p\|Nanoce1779_2\|412813:1..1864 -
CDS_10874	CDS	CDS_10874:1335..1537 -
CDS_10874	CDS	CDS_10874:559..836 -
CDS_10874	CDS	CDS_10874:20..264 -
jgi.p\|Nanoce1779_2\|412832	gene	jgi.p\|Nanoce1779_2\|412832:3039..3707 -
jgi.p\|Nanoce1779_2\|412832	mRNA	jgi.p\|Nanoce1779_2\|412832:3039..3707 -
CDS_10876	CDS	CDS_10876:3234..3599 -
jgi.p\|Nanoce1779_2\|413015	gene	jgi.p\|Nanoce1779_2\|413015:19150..21391 -
jgi.p\|Nanoce1779_2\|413015	mRNA	jgi.p\|Nanoce1779_2\|413015:19150..21391 -
CDS_10884	CDS	CDS_10884:21013..21353 -
CDS_10884	CDS	CDS_10884:20673..20781 -
CDS_10884	CDS	CDS_10884:19450..20497 -
CDS_10884	CDS	CDS_10884:19191..19309 -
jgi.p\|Nanoce1779_2\|534315	gene	jgi.p\|Nanoce1779_2\|534315:2384..3066 -
jgi.p\|Nanoce1779_2\|534315	mRNA	jgi.p\|Nanoce1779_2\|534315:2384..3066 -
CDS_10875	CDS	CDS_10875:3011..3066 -
CDS_10875	CDS	CDS_10875:2384..2780 -
jgi.p\|Nanoce1779_2\|570179	gene	jgi.p\|Nanoce1779_2\|570179:10632..11069 +
jgi.p\|Nanoce1779_2\|570179	mRNA	jgi.p\|Nanoce1779_2\|570179:10632..11069 +
CDS_10880	CDS	CDS_10880:10632..11069 +
jgi.p\|Nanoce1779_2\|613841	gene	jgi.p\|Nanoce1779_2\|613841:11574..13327 -
jgi.p\|Nanoce1779_2\|613841	mRNA	jgi.p\|Nanoce1779_2\|613841:11574..13327 -
CDS_10881	CDS	CDS_10881:13257..13306 -
CDS_10881	CDS	CDS_10881:12860..13128 -
CDS_10881	CDS	CDS_10881:12629..12779 -
CDS_10881	CDS	CDS_10881:12467..12557 -
CDS_10881	CDS	CDS_10881:12293..12396 -
CDS_10881	CDS	CDS_10881:11953..12208 -
CDS_10881	CDS	CDS_10881:11686..11844 -
jgi.p\|Nanoce1779_2\|613856	gene	jgi.p\|Nanoce1779_2\|613856:16917..19844 -
jgi.p\|Nanoce1779_2\|613856	mRNA	jgi.p\|Nanoce1779_2\|613856:16917..19844 -
CDS_10883	CDS	CDS_10883:18335..18544 -
CDS_10883	CDS	CDS_10883:17323..18171 -
CDS_10883	CDS	CDS_10883:17076..17243 -
jgi.p\|Nanoce1779_2\|626456	gene	jgi.p\|Nanoce1779_2\|626456:14625..16802 +
jgi.p\|Nanoce1779_2\|626456	mRNA	jgi.p\|Nanoce1779_2\|626456:14625..16802 +
CDS_10882	CDS	CDS_10882:15037..15133 +
CDS_10882	CDS	CDS_10882:15226..16802 +
jgi.p\|Nanoce1779_2\|634421	gene	jgi.p\|Nanoce1779_2\|634421:3546..6598 +
jgi.p\|Nanoce1779_2\|634421	mRNA	jgi.p\|Nanoce1779_2\|634421:3546..6598 +
CDS_10877	CDS	CDS_10877:3815..4123 +
CDS_10877	CDS	CDS_10877:4287..4514 +
CDS_10877	CDS	CDS_10877:4697..4849 +
CDS_10877	CDS	CDS_10877:4999..6291 +
jgi.p\|Nanoce1779_2\|643707	gene	jgi.p\|Nanoce1779_2\|643707:22905..23315 +
jgi.p\|Nanoce1779_2\|643707	mRNA	jgi.p\|Nanoce1779_2\|643707:22905..23315 +
CDS_10885	CDS	CDS_10885:22905..22946 +
CDS_10885	CDS	CDS_10885:23130..23315 +
jgi.p\|Nanoce1779_2\|665154	gene	jgi.p\|Nanoce1779_2\|665154:7147..8835 -
jgi.p\|Nanoce1779_2\|665154	mRNA	jgi.p\|Nanoce1779_2\|665154:7147..8835 -
CDS_10878	CDS	CDS_10878:7390..8775 -
jgi.p\|Nanoce1779_2\|675164	gene	jgi.p\|Nanoce1779_2\|675164:21715..33493 +
jgi.p\|Nanoce1779_2\|675164	mRNA	jgi.p\|Nanoce1779_2\|675164:21715..33493 +
CDS_10886	CDS	CDS_10886:24015..24189 +
CDS_10886	CDS	CDS_10886:24288..24473 +
CDS_10886	CDS	CDS_10886:24645..25171 +
CDS_10886	CDS	CDS_10886:25826..26126 +
CDS_10886	CDS	CDS_10886:26436..26894 +
CDS_10886	CDS	CDS_10886:27111..27557 +
CDS_10886	CDS	CDS_10886:30520..30699 +
CDS_10886	CDS	CDS_10886:30750..31265 +
CDS_10886	CDS	CDS_10886:31352..31575 +
CDS_10886	CDS	CDS_10886:31758..31907 +
jgi.p\|Nanoce1779_2\|412813	polypeptide	jgi.p\|Nanoce1779_2\|412813:20..1537 -
jgi.p\|Nanoce1779_2\|412832	polypeptide	jgi.p\|Nanoce1779_2\|412832:3234..3599 -
jgi.p\|Nanoce1779_2\|413015	polypeptide	jgi.p\|Nanoce1779_2\|413015:19191..21353 -
jgi.p\|Nanoce1779_2\|534315	polypeptide	jgi.p\|Nanoce1779_2\|534315:2384..3066 -
jgi.p\|Nanoce1779_2\|570179	polypeptide	jgi.p\|Nanoce1779_2\|570179:10632..11069 +
jgi.p\|Nanoce1779_2\|613841	polypeptide	jgi.p\|Nanoce1779_2\|613841:11686..13306 -
jgi.p\|Nanoce1779_2\|613856	polypeptide	jgi.p\|Nanoce1779_2\|613856:17076..18544 -
jgi.p\|Nanoce1779_2\|626456	polypeptide	jgi.p\|Nanoce1779_2\|626456:15037..16802 +
jgi.p\|Nanoce1779_2\|634421	polypeptide	jgi.p\|Nanoce1779_2\|634421:3815..6291 +
jgi.p\|Nanoce1779_2\|643707	polypeptide	jgi.p\|Nanoce1779_2\|643707:22905..23315 +
jgi.p\|Nanoce1779_2\|665154	polypeptide	jgi.p\|Nanoce1779_2\|665154:7390..8775 -
jgi.p\|Nanoce1779_2\|675164	polypeptide	jgi.p\|Nanoce1779_2\|675164:24015..31907 +
ncniL003	syntenic_region	ncniL003:2..33493 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications