jgi.p|Nanoce1779_2|534315, mRNA_10875 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|534315
Unique NamemRNA_10875
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length453
Alignment locationscaffold_79:2384..3066 -

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Properties
Property NameValue
TranscriptId534401
TrackFilteredModels2
ProteinId534315
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_79supercontigscaffold_79:2384..3066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|534315gene_10875Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|534315mRNA_10875-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10875CDS_10875Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10875 ID=mRNA_10875|Name=jgi.p|Nanoce1779_2|534315|organism=Nannochloropsis oceanica|type=mRNA|length=453bp
CCATTGGGGCAGAGGAAAATCCGCTCGCGGGTACACGCAGAGGGGGATTG
GCATCGCGCGGTTCATATCTGGCTGGCTGACGACCATGGCGGGGTACTCC
TCCAAAAGCGTTCGGAATTCAAAGACACGTTTCCCGGTCGTTGGGACGTC
TCTTGCGGCGGTCATATCGAATCGGGCGATGAGGCCTTCCCTACAGCTGT
AAGGGAGCTGGAGGAAGAATTGGGTTTGCCCGCAGCAGTAGCCGAGAAGG
TGGAGAAGCTGTACACAATTGCATGCACAAACAAGGGTACGACGGAGAGA
CACGGTGAATTTACGTGTCGTGAGTTTCAGGATTTCTTCCTACTGAGAGT
CGGGAAGAGGCATGACTTGAGTATGTATAAGTACCCGCCGGGGGAGGTGA
CTGAGGTAAGGAGGGGAGGGGACAGGCAGAGAGGAAGGGAGAGAAGAGAA
TAG
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protein sequence of jgi.p|Nanoce1779_2|534315

>mRNA_10875-protein ID=mRNA_10875-protein|Name=jgi.p|Nanoce1779_2|534315|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
PLGQRKIRSRVHAEGDWHRAVHIWLADDHGGVLLQKRSEFKDTFPGRWDV
SCGGHIESGDEAFPTAVRELEEELGLPAAVAEKVEKLYTIACTNKGTTER
HGEFTCREFQDFFLLRVGKRHDLSMYKYPPGEVTEVRRGGDRQRGRERRE
*
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mRNA from alignment at scaffold_79:2384..3066-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10875 ID=mRNA_10875|Name=jgi.p|Nanoce1779_2|534315|organism=Nannochloropsis oceanica|type=mRNA|length=683bp|location=Sequence derived from alignment at scaffold_79:2384..3066- (Nannochloropsis oceanica)
CCATTGGGGCAGAGGAAAATCCGCTCGCGGGTACACGCAGAGGGGGATTG
GCATCGGTAGATTGGGTTTAGGGGTTTGAGGGAGAGGGGGGGAAAGGGGG
GAAAGGGAATGGCGAGGAGAGCGGTGTCGATAAGAAGAGGGTTAGCTCCT
AGTTAGGTGTCGAAGGGAGAAAAATCGCCCTCTGACAAGTTCCAATAGGC
TTGTAATCACATCCGTCCTTCTCCCTAGAGCTCACCATTTTCTCTCCCTT
TCCTCCCCTTCCTCCTTTCCTTCCCTCCTCTCTCAGCGCGGTTCATATCT
GGCTGGCTGACGACCATGGCGGGGTACTCCTCCAAAAGCGTTCGGAATTC
AAAGACACGTTTCCCGGTCGTTGGGACGTCTCTTGCGGCGGTCATATCGA
ATCGGGCGATGAGGCCTTCCCTACAGCTGTAAGGGAGCTGGAGGAAGAAT
TGGGTTTGCCCGCAGCAGTAGCCGAGAAGGTGGAGAAGCTGTACACAATT
GCATGCACAAACAAGGGTACGACGGAGAGACACGGTGAATTTACGTGTCG
TGAGTTTCAGGATTTCTTCCTACTGAGAGTCGGGAAGAGGCATGACTTGA
GTATGTATAAGTACCCGCCGGGGGAGGTGACTGAGGTAAGGAGGGGAGGG
GACAGGCAGAGAGGAAGGGAGAGAAGAGAATAG
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Coding sequence (CDS) from alignment at scaffold_79:2384..3066-

>mRNA_10875 ID=mRNA_10875|Name=jgi.p|Nanoce1779_2|534315|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_79:2384..3066- (Nannochloropsis oceanica)
CGCGGTTCATATCTGGCTGGCTGACGACCATGGCGGGGTACTCCTCCAAA
AGCGTTCGGAATTCAAAGACACGTTTCCCGGTCGTTGGGACGTCTCTTGC
GGCGGTCATATCGAATCGGGCGATGAGGCCTTCCCTACAGCTGTAAGGGA
GCTGGAGGAAGAATTGGGTTTGCCCGCAGCAGTAGCCGAGAAGGTGGAGA
AGCTGTACACAATTGCATGCACAAACAAGGGTACGACGGAGAGACACGGT
GAATTTACGTGTCGTGAGTTTCAGGATTTCTTCCTACTGAGAGTCGGGAA
GAGGCATGACTTGAGTATGTATAAGTACCCGCCGGGGGAGGTGACTGAGG
TAAGGAGGGGAGGGGACAGGCAGAGAGGAAGGGAGAGAAGAGAATAGCCA
TTGGGGCAGAGGAAAATCCGCTCGCGGGTACACGCAGAGGGGGATTGGCA
TCGCGCGGTTCATATCTGGCTGGCTGACGACCATGGCGGGGTACTCCTCC
AAAAGCGTTCGGAATTCAAAGACACGTTTCCCGGTCGTTGGGACGTCTCT
TGCGGCGGTCATATCGAATCGGGCGATGAGGCCTTCCCTACAGCTGTAAG
GGAGCTGGAGGAAGAATTGGGTTTGCCCGCAGCAGTAGCCGAGAAGGTGG
AGAAGCTGTACACAATTGCATGCACAAACAAGGGTACGACGGAGAGACAC
GGTGAATTTACGTGTCGTGAGTTTCAGGATTTCTTCCTACTGAGAGTCGG
GAAGAGGCATGACTTGAGTATGTATAAGTACCCGCCGGGGGAGGTGACTG
AGGTAAGGAGGGGAGGGGACAGGCAGAGAGGAAGGGAGAGAAGAGAATAG
CCATTGGGGCAGAGGAAAATCCGCTCGCGGGTACACGCAGAGGGGGATTG
GCATCG
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Synonyms
Publications