jgi.p|Nanoce1779_2|412832, mRNA_10876 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|412832
Unique NamemRNA_10876
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length669
Alignment locationscaffold_79:3039..3707 -

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Properties
Property NameValue
TranscriptId412918
TrackFilteredModels2
ProteinId412832
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_79supercontigscaffold_79:3039..3707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|412832gene_10876Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|412832mRNA_10876-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10876CDS_10876Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10876 ID=mRNA_10876|Name=jgi.p|Nanoce1779_2|412832|organism=Nannochloropsis oceanica|type=mRNA|length=669bp
GCATCATCATCCTCCTTTTACAAAATCACTGTCAGGGCTGAAGCACGAAA
TCACCTCACCTGTCTCCGACATCTCTTTCTCTACCTACACATCAACACCA
CATAGGCAATGCGCTCAAGATTAGCGGCGTCTTGCAACGGTGGGCGACAC
TTTTTTTTTGGTGCTACTGCCTGCGCTTCGATGCTGCTGCTTGCGGCGAG
AAGTGCTAGTGCTTTCTTGACCACCACTCGATACGCCGCTGCTACCTGTA
GGTCAGCATTTCCACAATCTAACACGCAGTATTTTATGGCGGCTGGCATC
AGCGGGGGAGGGGAACGGCCACGCGTGTACGAGGAAGGACAGGTAAAGAC
ACGGGGAGCGCGCGCCCGAGAGAGAGAGGAAGGGAGGATCGTTGATGCTG
TCGGCCACGGGCTACAGATTAAAACATGCGGACATAATTTTGAAATAAAT
GCACGTTCTAATCTTGCGATTTAAGTGGGCATGTCTACTGTCCATTTACC
CATCAACAATTCACTCCACTCCCTCCCTCACTCCCTCCTGCCCTCCCTCC
CTCCATTCCACAGGATCCGAAAGAACTCTTCGACCTGTTTGAGCCTCCTA
CCCCCGAGGAATTGGCGGGTGCCATAGTGGAGAACTTAAGGCCATTGGGG
CAGAGGAAAATCCGCTCGC
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protein sequence of jgi.p|Nanoce1779_2|412832

>mRNA_10876-protein ID=mRNA_10876-protein|Name=jgi.p|Nanoce1779_2|412832|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MRSRLAASCNGGRHFFFGATACASMLLLAARSASAFLTTTRYAAATCRSA
FPQSNTQYFMAAGISGGGERPRVYEEGQVKTRGARAREREEGRIVDAVGH
GLQIKTCGHNFEINARSNLAI*
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mRNA from alignment at scaffold_79:3039..3707-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10876 ID=mRNA_10876|Name=jgi.p|Nanoce1779_2|412832|organism=Nannochloropsis oceanica|type=mRNA|length=669bp|location=Sequence derived from alignment at scaffold_79:3039..3707- (Nannochloropsis oceanica)
GCATCATCATCCTCCTTTTACAAAATCACTGTCAGGGCTGAAGCACGAAA
TCACCTCACCTGTCTCCGACATCTCTTTCTCTACCTACACATCAACACCA
CATAGGCAATGCGCTCAAGATTAGCGGCGTCTTGCAACGGTGGGCGACAC
TTTTTTTTTGGTGCTACTGCCTGCGCTTCGATGCTGCTGCTTGCGGCGAG
AAGTGCTAGTGCTTTCTTGACCACCACTCGATACGCCGCTGCTACCTGTA
GGTCAGCATTTCCACAATCTAACACGCAGTATTTTATGGCGGCTGGCATC
AGCGGGGGAGGGGAACGGCCACGCGTGTACGAGGAAGGACAGGTAAAGAC
ACGGGGAGCGCGCGCCCGAGAGAGAGAGGAAGGGAGGATCGTTGATGCTG
TCGGCCACGGGCTACAGATTAAAACATGCGGACATAATTTTGAAATAAAT
GCACGTTCTAATCTTGCGATTTAAGTGGGCATGTCTACTGTCCATTTACC
CATCAACAATTCACTCCACTCCCTCCCTCACTCCCTCCTGCCCTCCCTCC
CTCCATTCCACAGGATCCGAAAGAACTCTTCGACCTGTTTGAGCCTCCTA
CCCCCGAGGAATTGGCGGGTGCCATAGTGGAGAACTTAAGGCCATTGGGG
CAGAGGAAAATCCGCTCGC
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Coding sequence (CDS) from alignment at scaffold_79:3039..3707-

>mRNA_10876 ID=mRNA_10876|Name=jgi.p|Nanoce1779_2|412832|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_79:3039..3707- (Nannochloropsis oceanica)
ATGCGCTCAAGATTAGCGGCGTCTTGCAACGGTGGGCGACACTTTTTTTT
TGGTGCTACTGCCTGCGCTTCGATGCTGCTGCTTGCGGCGAGAAGTGCTA
GTGCTTTCTTGACCACCACTCGATACGCCGCTGCTACCTGTAGGTCAGCA
TTTCCACAATCTAACACGCAGTATTTTATGGCGGCTGGCATCAGCGGGGG
AGGGGAACGGCCACGCGTGTACGAGGAAGGACAGGTAAAGACACGGGGAG
CGCGCGCCCGAGAGAGAGAGGAAGGGAGGATCGTTGATGCTGTCGGCCAC
GGGCTACAGATTAAAACATGCGGACATAATTTTGAAATAAATGCACGTTC
TAATCTTGCGATTTAA
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Synonyms
Publications