jgi.p|Nanoce1779_2|643707, mRNA_10885 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|643707
Unique NamemRNA_10885
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length228
Alignment locationscaffold_79:22905..23315 +

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Properties
Property NameValue
TranscriptId643793
TrackFilteredModels2
ProteinId643707
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_79supercontigscaffold_79:22905..23315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643707gene_10885Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643707mRNA_10885-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10885CDS_10885Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10885 ID=mRNA_10885|Name=jgi.p|Nanoce1779_2|643707|organism=Nannochloropsis oceanica|type=mRNA|length=228bp
ATGCGGGAGGCCATGCGACGGCAACTGTGCGGGCCTATCACGATCGACCT
CTTTAGCCCTGGTTTGACGACTGAACAAACATTTAATCTGACGGAGCACT
ACTCGATTGTAAAACATGTGGGGAATGATTCCCCTTCCACCTTTATTTTT
GGCACGATGGACGACTCTGTCGTGCCTTCCGAGAGTTCCATGCGCATGAC
CCAAGTCCTCAGGGATGCGAAGGTGTGA
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protein sequence of jgi.p|Nanoce1779_2|643707

>mRNA_10885-protein ID=mRNA_10885-protein|Name=jgi.p|Nanoce1779_2|643707|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MREAMRRQLCGPITIDLFSPGLTTEQTFNLTEHYSIVKHVGNDSPSTFIF
GTMDDSVVPSESSMRMTQVLRDAKV*
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mRNA from alignment at scaffold_79:22905..23315+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10885 ID=mRNA_10885|Name=jgi.p|Nanoce1779_2|643707|organism=Nannochloropsis oceanica|type=mRNA|length=411bp|location=Sequence derived from alignment at scaffold_79:22905..23315+ (Nannochloropsis oceanica)
ATGCGGGAGGCCATGCGACGGCAACTGTGCGGGCCTATCACGGTGAAGGC
AATATTCATGCTGCAGATCTCATCAAATAGCAGAGATAAGCCCCATGCTG
CAAGTGTCTCTGGTCCATAGCATGATAAAATAAGACCAAACACATACAGT
TCTCGGCCTGACTTTGGTTTGCTTGTCTGTCCCGTCATCACGATGGAGGA
CGGCACAACGCGTTTCCCCTCCAAGATCGACCTCTTTAGCCCTGGTTTGA
CGACTGAACAAACATTTAATCTGACGGAGCACTACTCGATTGTAAAACAT
GTGGGGAATGATTCCCCTTCCACCTTTATTTTTGGCACGATGGACGACTC
TGTCGTGCCTTCCGAGAGTTCCATGCGCATGACCCAAGTCCTCAGGGATG
CGAAGGTGTGA
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Coding sequence (CDS) from alignment at scaffold_79:22905..23315+

>mRNA_10885 ID=mRNA_10885|Name=jgi.p|Nanoce1779_2|643707|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_79:22905..23315+ (Nannochloropsis oceanica)
ATGCGGGAGGCCATGCGACGGCAACTGTGCGGGCCTATCACGATCGACCT
CTTTAGCCCTGGTTTGACGACTGAACAAACATTTAATCTGACGGAGCACT
ACTCGATTGTAAAACATGTGGGGAATGATTCCCCTTCCACCTTTATTTTT
GGCACGATGGACGACTCTGTCGTGCCTTCCGAGAGTTCCATGCGCATGAC
CCAAGTCCTCAGGGATGCGAAGGTGTGAATGCGGGAGGCCATGCGACGGC
AACTGTGCGGGCCTATCACGATCGACCTCTTTAGCCCTGGTTTGACGACT
GAACAAACATTTAATCTGACGGAGCACTACTCGATTGTAAAACATGTGGG
GAATGATTCCCCTTCCACCTTTATTTTTGGCACGATGGACGACTCTGTCG
TGCCTTCCGAGAGTTCCATGCGCATGACCCAAGTCCTCAGGGATGCGAAG
GTGTGA
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Synonyms
Publications