jgi.p|Nanoce1779_2|665154, mRNA_10878 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|665154
Unique NamemRNA_10878
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1689
Alignment locationscaffold_79:7147..8835 -

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Properties
Property NameValue
TranscriptId665240
TrackFilteredModels2
ProteinId665154
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_79supercontigscaffold_79:7147..8835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|665154gene_10878Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|665154mRNA_10878-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10878CDS_10878Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10878 ID=mRNA_10878|Name=jgi.p|Nanoce1779_2|665154|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp
TCACTATTTTCATCCTCCACCTACAGCACCAAACGTAGTCCCAAACCCCA
GAAAACAGCGATGGCCGCTATGTTTGCCGCCTTCAAGAACAACGGGGGCA
ACGAGGAAGCGGAGGAGGAGGTTCAACCCCTAAATCGCTTTCGCACCATG
ACTCGGCCGCAGGTCAACCACACCACTAGCGACGACGAAGATGACGATAA
CGACCTCTACGAGCTGAGATTGGACATGCCGCCCATGCCGATCGTGGGCA
AGCTCCCCGCCATTCACGCGGAGCAGCAGCAGCAGCAGCAGCAGCCATTC
CCCTCATCCTCCCCCTTTTCGCCTTCCTTCTTCCTTGCCCCTGCTATCCC
GCGTCCGCAGCGCCGCAACGAGCCTATGAGCTCGGCAAAAATCAATGAGG
CGGAAGAGGAAGGCCAGGCCAGCAAGCGCGTCCGTGGCATGATAGTAGAA
CATGAGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAAGTGCCGGT
GGAGATGGGAAAGACCAGGATCAGGAAAGAGCTGCCATGATGGTAGCGGA
AGGCGAAAGGGACGAGGGTATGGAACAGGAGGAAGATACTCAGGAGGAAG
ACTCGCCGGAGGAGGAAGGAATGGAGAAGGAGGGAGAGGAGGAAGAGAAG
ATGGAAGTGTCCAAGACCCGAATGGAGGAGGGGTCAGATCCGATCTCCGC
TCCTTCGGCTTTGGCTACTTTGAGTAGGAAAGAGGGATGGAAGGAGGGAT
TGAAGGAGGGAGGAAAGGTAGAAGTTGTGGCCCGGGTTGCACCTCAGCAG
CAGTATCAGCAAATCGAGAAGCGAAAAGAGGAGGAGAAAGAATGGGTTGG
AGGAGAACAGACACAGCACCAGCAGTACCAGTACCTTCTTCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGAAAGAGAAGCGAGGTCAGCAAGGA
CAACGAGGACCCGCCCCTCCGACAAAGAAAACCGAGAAGCAGCAGCAGCA
GAAGCAGCAGCAGCAGCAGCAGCATGAGCAGAAGGTAGAACGAAATATGG
AAGAAACGAGGGAGGACGGGAAAGAGGACAGGAAGGAGGGAGGGGGGGAG
GACGAGTTCGACGGGGTTTATCGTAGTGAAATTAAGAGGCTCAAGGGGTT
GGAAGAGGCGGAGGAAAAGGTGTCGATGCTGTGGGTGGGTGCGTTGAAAG
AAACAATGGACGTGACGACGCGGCTGATGAGGAATGATTGTTACGTGCAG
CATATTGCGAGGATTGAGGAACTGAAGGAGTCTGTGAGGGAGGTGCTGGG
GCTGTATGGCCTGGAGGCGGAGGAGCAGGAGGTGGGGGAGGTATGACAGG
GGTTGTGTTTGGGTGATGTATATATATATATAGAGAGAGAGAGGGTGGGG
GGGAAATAGAGAGCGAGAAAGAGAGGGGGAAACAGAGAAAAGAAAAAACA
AAGAGAGAGAGAGAAAGAAGAAGAAGAAAAGAAGGAGTAGAAGGCTTTGA
AAAGATGAGCAAGGAGAAGATAACGAAGCAGTAAGATGGCGATGATAACA
ATGGTGAAGATGAAGAACAAATAGAGGCAAGAGAAGCTC
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protein sequence of jgi.p|Nanoce1779_2|665154

>mRNA_10878-protein ID=mRNA_10878-protein|Name=jgi.p|Nanoce1779_2|665154|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MAAMFAAFKNNGGNEEAEEEVQPLNRFRTMTRPQVNHTTSDDEDDDNDLY
ELRLDMPPMPIVGKLPAIHAEQQQQQQQPFPSSSPFSPSFFLAPAIPRPQ
RRNEPMSSAKINEAEEEGQASKRVRGMIVEHEGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGSAGGDGKDQDQERAAMMVAEGER
DEGMEQEEDTQEEDSPEEEGMEKEGEEEEKMEVSKTRMEEGSDPISAPSA
LATLSRKEGWKEGLKEGGKVEVVARVAPQQQYQQIEKRKEEEKEWVGGEQ
TQHQQYQYLLQQQQQQQQQQQQKEKRGQQGQRGPAPPTKKTEKQQQQKQQ
QQQQHEQKVERNMEETREDGKEDRKEGGGEDEFDGVYRSEIKRLKGLEEA
EEKVSMLWVGALKETMDVTTRLMRNDCYVQHIARIEELKESVREVLGLYG
LEAEEQEVGEV*
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mRNA from alignment at scaffold_79:7147..8835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10878 ID=mRNA_10878|Name=jgi.p|Nanoce1779_2|665154|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp|location=Sequence derived from alignment at scaffold_79:7147..8835- (Nannochloropsis oceanica)
TCACTATTTTCATCCTCCACCTACAGCACCAAACGTAGTCCCAAACCCCA
GAAAACAGCGATGGCCGCTATGTTTGCCGCCTTCAAGAACAACGGGGGCA
ACGAGGAAGCGGAGGAGGAGGTTCAACCCCTAAATCGCTTTCGCACCATG
ACTCGGCCGCAGGTCAACCACACCACTAGCGACGACGAAGATGACGATAA
CGACCTCTACGAGCTGAGATTGGACATGCCGCCCATGCCGATCGTGGGCA
AGCTCCCCGCCATTCACGCGGAGCAGCAGCAGCAGCAGCAGCAGCCATTC
CCCTCATCCTCCCCCTTTTCGCCTTCCTTCTTCCTTGCCCCTGCTATCCC
GCGTCCGCAGCGCCGCAACGAGCCTATGAGCTCGGCAAAAATCAATGAGG
CGGAAGAGGAAGGCCAGGCCAGCAAGCGCGTCCGTGGCATGATAGTAGAA
CATGAGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAAGTGCCGGT
GGAGATGGGAAAGACCAGGATCAGGAAAGAGCTGCCATGATGGTAGCGGA
AGGCGAAAGGGACGAGGGTATGGAACAGGAGGAAGATACTCAGGAGGAAG
ACTCGCCGGAGGAGGAAGGAATGGAGAAGGAGGGAGAGGAGGAAGAGAAG
ATGGAAGTGTCCAAGACCCGAATGGAGGAGGGGTCAGATCCGATCTCCGC
TCCTTCGGCTTTGGCTACTTTGAGTAGGAAAGAGGGATGGAAGGAGGGAT
TGAAGGAGGGAGGAAAGGTAGAAGTTGTGGCCCGGGTTGCACCTCAGCAG
CAGTATCAGCAAATCGAGAAGCGAAAAGAGGAGGAGAAAGAATGGGTTGG
AGGAGAACAGACACAGCACCAGCAGTACCAGTACCTTCTTCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGAAAGAGAAGCGAGGTCAGCAAGGA
CAACGAGGACCCGCCCCTCCGACAAAGAAAACCGAGAAGCAGCAGCAGCA
GAAGCAGCAGCAGCAGCAGCAGCATGAGCAGAAGGTAGAACGAAATATGG
AAGAAACGAGGGAGGACGGGAAAGAGGACAGGAAGGAGGGAGGGGGGGAG
GACGAGTTCGACGGGGTTTATCGTAGTGAAATTAAGAGGCTCAAGGGGTT
GGAAGAGGCGGAGGAAAAGGTGTCGATGCTGTGGGTGGGTGCGTTGAAAG
AAACAATGGACGTGACGACGCGGCTGATGAGGAATGATTGTTACGTGCAG
CATATTGCGAGGATTGAGGAACTGAAGGAGTCTGTGAGGGAGGTGCTGGG
GCTGTATGGCCTGGAGGCGGAGGAGCAGGAGGTGGGGGAGGTATGACAGG
GGTTGTGTTTGGGTGATGTATATATATATATAGAGAGAGAGAGGGTGGGG
GGGAAATAGAGAGCGAGAAAGAGAGGGGGAAACAGAGAAAAGAAAAAACA
AAGAGAGAGAGAGAAAGAAGAAGAAGAAAAGAAGGAGTAGAAGGCTTTGA
AAAGATGAGCAAGGAGAAGATAACGAAGCAGTAAGATGGCGATGATAACA
ATGGTGAAGATGAAGAACAAATAGAGGCAAGAGAAGCTC
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Coding sequence (CDS) from alignment at scaffold_79:7147..8835-

>mRNA_10878 ID=mRNA_10878|Name=jgi.p|Nanoce1779_2|665154|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_79:7147..8835- (Nannochloropsis oceanica)
ATGGCCGCTATGTTTGCCGCCTTCAAGAACAACGGGGGCAACGAGGAAGC
GGAGGAGGAGGTTCAACCCCTAAATCGCTTTCGCACCATGACTCGGCCGC
AGGTCAACCACACCACTAGCGACGACGAAGATGACGATAACGACCTCTAC
GAGCTGAGATTGGACATGCCGCCCATGCCGATCGTGGGCAAGCTCCCCGC
CATTCACGCGGAGCAGCAGCAGCAGCAGCAGCAGCCATTCCCCTCATCCT
CCCCCTTTTCGCCTTCCTTCTTCCTTGCCCCTGCTATCCCGCGTCCGCAG
CGCCGCAACGAGCCTATGAGCTCGGCAAAAATCAATGAGGCGGAAGAGGA
AGGCCAGGCCAGCAAGCGCGTCCGTGGCATGATAGTAGAACATGAGGGGG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAAGTGCCGGTGGAGATGGGA
AAGACCAGGATCAGGAAAGAGCTGCCATGATGGTAGCGGAAGGCGAAAGG
GACGAGGGTATGGAACAGGAGGAAGATACTCAGGAGGAAGACTCGCCGGA
GGAGGAAGGAATGGAGAAGGAGGGAGAGGAGGAAGAGAAGATGGAAGTGT
CCAAGACCCGAATGGAGGAGGGGTCAGATCCGATCTCCGCTCCTTCGGCT
TTGGCTACTTTGAGTAGGAAAGAGGGATGGAAGGAGGGATTGAAGGAGGG
AGGAAAGGTAGAAGTTGTGGCCCGGGTTGCACCTCAGCAGCAGTATCAGC
AAATCGAGAAGCGAAAAGAGGAGGAGAAAGAATGGGTTGGAGGAGAACAG
ACACAGCACCAGCAGTACCAGTACCTTCTTCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGAAAGAGAAGCGAGGTCAGCAAGGACAACGAGGAC
CCGCCCCTCCGACAAAGAAAACCGAGAAGCAGCAGCAGCAGAAGCAGCAG
CAGCAGCAGCAGCATGAGCAGAAGGTAGAACGAAATATGGAAGAAACGAG
GGAGGACGGGAAAGAGGACAGGAAGGAGGGAGGGGGGGAGGACGAGTTCG
ACGGGGTTTATCGTAGTGAAATTAAGAGGCTCAAGGGGTTGGAAGAGGCG
GAGGAAAAGGTGTCGATGCTGTGGGTGGGTGCGTTGAAAGAAACAATGGA
CGTGACGACGCGGCTGATGAGGAATGATTGTTACGTGCAGCATATTGCGA
GGATTGAGGAACTGAAGGAGTCTGTGAGGGAGGTGCTGGGGCTGTATGGC
CTGGAGGCGGAGGAGCAGGAGGTGGGGGAGGTATGA
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Synonyms
Publications