jgi.p|Nanoce1779_2|412813, mRNA_10874 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|412813
Unique NamemRNA_10874
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1072
Alignment locationscaffold_79:1..1864 -

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Properties
Property NameValue
TranscriptId412899
TrackFilteredModels2
ProteinId412813
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_79supercontigscaffold_79:1..1864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|412813gene_10874Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|412813mRNA_10874-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10874CDS_10874Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10874 ID=mRNA_10874|Name=jgi.p|Nanoce1779_2|412813|organism=Nannochloropsis oceanica|type=mRNA|length=1072bp
CTCCTCTCCTGAGGCCCATCTTTGACTTGGTATTGCACTCGCCGTCCTGT
GCGTTTGCCACATGGTTTCCTCCTTAGGTCCTGGGTCATTTTGAAAATAA
CTAACGTGAGCGTATAATGGAGACCAGATCAGGAGTCTTGTATACTCTTA
TGGTTTGGTGTTGGGCTGGCCTTCAGCATTGGATTCCTTGAAGACAATGC
AGCCACCAATCGATGCGGCGCGGCATCTTATGTCCATGCAGTGTTTTCCT
TGCACGTAACCCACAAGCCCATTGCCGCACGCTTATACCCAATACTACCA
CACACCACTACAAAGAAAACAAGCCAAATGCTGGTTGTCCTCACCAACAG
GGTGCGGGTTGCGCGTCTCGCGTCCCGCGCCGCCTCAGCTTCCGCTGCCG
ACCTCCCTCTCCCCCGTCCTTCCATGTTCCAAGCGGCGCGCAGCATTTGG
CATACGCCCCACTTAGAGCGCGAGAGTGACGGCGGAATGATCCGCGAGGA
CGAGCCGCACCTAAAGCGCATTGGCAGAGAGCCCGTGTATGTAAAAAGTG
CGCTCGAAGCTGTCACAGGCATTGAATCTGGCCAGCGTGTCGTCATCCAA
GGCGCAGTGGCCACGCCCACCCTCCTCATCGACGCTATGACCCACCATGG
GAAGAGCGCCAAGTTAAAGGGTGTCCAAGTTTGCCATCTCCACACTGAGG
GCTCTGCGCCCTATGCTGAAAAAGAATGCTCGGATATTTTTCACACGACG
TGTTTTTTCGTGGGTTCCAACATGCGGAAGCCTGTCGCAGAAGGCCGAGC
AGAGTATGTCCCCATCTACCTCAGCGAGATCCCCAATCTTTTCCGTCGAA
GGCGTTTGCCCATCGACGTGGCGTTGGTTCAGGTGTCGCCTCCGGACAAG
CACGGCTTTTGCTCTCTGGGCACGAGCGTGGATATCATGAGGGCAGGGGT
GCAATGCGCAAAGCACGTGGTGGGCCATGTTAACGCCAAGATGCCTCGGA
CGTTGGGGGATGGTCTGGTCCACATTTCCCAGTTCGACCGGGTGTTCGAG
TAAGGAGTACCCTTGGCCCTTG
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protein sequence of jgi.p|Nanoce1779_2|412813

>mRNA_10874-protein ID=mRNA_10874-protein|Name=jgi.p|Nanoce1779_2|412813|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MLVVLTNRVRVARLASRAASASAADLPLPRPSMFQAARSIWHTPHLERES
DGGMIREDEPHLKRIGREPVYVKSALEAVTGIESGQRVVIQGAVATPTLL
IDAMTHHGKSAKLKGVQVCHLHTEGSAPYAEKECSDIFHTTCFFVGSNMR
KPVAEGRAEYVPIYLSEIPNLFRRRRLPIDVALVQVSPPDKHGFCSLGTS
VDIMRAGVQCAKHVVGHVNAKMPRTLGDGLVHISQFDRVFE*
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mRNA from alignment at scaffold_79:1..1864-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10874 ID=mRNA_10874|Name=jgi.p|Nanoce1779_2|412813|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp|location=Sequence derived from alignment at scaffold_79:1..1864- (Nannochloropsis oceanica)
CTCCTCTCCTGAGGCCCATCTTTGACTTGGTATTGCACTCGCCGTCCTGT
GCGTTTGCCACATGGTTTCCTCCTTAGGTCCTGGGTCATTTTGAAAATAA
CTAACGTGAGCGTATAATGGAGACCAGATCAGGAGTCTTGTATACTCTTA
TGGTTTGGTGTTGGGCTGGCCTTCAGCATTGGATTCCTTGAAGACAATGC
AGCCACCAATCGATGCGGCGCGGCATCTTATGTCCATGCAGTGTTTTCCT
TGCACGTAACCCACAAGCCCATTGCCGCACGCTTATACCCAATACTACCA
CACACCACTACAAAGAAAACAAGCCAAATGCTGGTTGTCCTCACCAACAG
GGTGCGGGTTGCGCGTCTCGCGTCCCGCGCCGCCTCAGCTTCCGCTGCCG
ACCTCCCTCTCCCCCGTCCTTCCATGTTCCAAGCGGCGCGCAGCATTTGG
CATACGCCCCACTTAGAGCGCGAGAGTGACGGCGGAATGATCCGCGAGGA
CGAGCCGCACCTAAAGCGCATTGGCAGAGAGTAAGTTTGGGTTGGGGTAT
CGGCTGTAGGCACAAGGTTTTCAGGATTGTTTGGACACCATCCCTTCTTG
CCTCGTAGCTGAAGTAAATTTCTTTACAGCTTTCGACTGACGTATTGAGT
GCCATTCTTCGACACCTTCTTTATCGACTGTCCCCTTTCGAGCCCCAGGG
AAATGGAATGATAAGGGGAAAGTCGTCGCTCTGTAGTCACGTCCCTCGTT
CATTCCTTCTCACACTCGATGTATACACGACACGGGGGCACGGGAAGTTA
TGCCAAAATCTCTGAGCTCGTCTGATAAGTCGCCATGTAGGATTTGAAAT
GTGACCAGATACATGAGTTCTGGGTAGCATCCTTGTTAGTCGTCCAATTT
GATCATTGAACTTAACATTCATCTCCACCACCTCATCTCTTTCTCCTACC
CCCACAGGGGACCACGAATTCAGTTTTAAAAATATTCGTTTGTATTCGGA
CTAAGTCTTCCTCTCCCAACTCATATAGGCCCGTGTATGTAAAAAGTGCG
CTCGAAGCTGTCACAGGCATTGAATCTGGCCAGCGTGTCGTCATCCAAGG
CGCAGTGGCCACGCCCACCCTCCTCATCGACGCTATGACCCACCATGGGA
AGAGCGCCAAGTTAAAGGGTGTCCAAGTTTGCCATCTCCACACTGAGGGC
TCTGCGCCCTATGCTGAAAAAGAATGCTCGGATATTTTTCACACGACGTG
TTTTTTCGTGGGTTCCAACATGCGGAAGCCTGTCGCAGAAGGCCGAGCAG
AGTATGGTAAGTGCTTCACCGTGTGTGTTTGCCTTCTTTCGTTATTTCCC
GCCCTTTCCCCCCCCACTCTTTCTCTCTCGGTGTTTCTCTATTTATCATC
TAGACGTGCTTACTCGTGGCGTTCTAAGCCTCCTTTAATTTTACTAGCCC
TCTACTGGACCAGCGAGATCCCATGTTTCCTCCTTCTCCCACGGTGACAA
CGAAACCGCTTGTCCGACGACGTCGCGGTCGTCTAAGGCTCTTCTCTTCA
CAATCACAGCGTCACACCCTCCCTTGTCCCCCCCGTTTACTTCCCTCCAG
TCCCCATCTACCTCAGCGAGATCCCCAATCTTTTCCGTCGAAGGCGTTTG
CCCATCGACGTGGCGTTGGTTCAGGTGTCGCCTCCGGACAAGCACGGCTT
TTGCTCTCTGGGCACGAGCGTGGATATCATGAGGGCAGGGGTGCAATGCG
CAAAGCACGTGGTGGGCCATGTTAACGCCAAGATGCCTCGGACGTTGGGG
GATGGTCTGGTCCACATTTCCCAGTTCGACCGGGTGTTCGAGTAAGGAGT
ACCCTTGGCCCTTG
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Coding sequence (CDS) from alignment at scaffold_79:1..1864-

>mRNA_10874 ID=mRNA_10874|Name=jgi.p|Nanoce1779_2|412813|organism=Nannochloropsis oceanica|type=CDS|length=2178bp|location=Sequence derived from alignment at scaffold_79:1..1864- (Nannochloropsis oceanica)
TCCCCATCTACCTCAGCGAGATCCCCAATCTTTTCCGTCGAAGGCGTTTG
CCCATCGACGTGGCGTTGGTTCAGGTGTCGCCTCCGGACAAGCACGGCTT
TTGCTCTCTGGGCACGAGCGTGGATATCATGAGGGCAGGGGTGCAATGCG
CAAAGCACGTGGTGGGCCATGTTAACGCCAAGATGCCTCGGACGTTGGGG
GATGGTCTGGTCCACATTTCCCAGTTCGACCGGGTGTTCGAGTAAGCCCG
TGTATGTAAAAAGTGCGCTCGAAGCTGTCACAGGCATTGAATCTGGCCAG
CGTGTCGTCATCCAAGGCGCAGTGGCCACGCCCACCCTCCTCATCGACGC
TATGACCCACCATGGGAAGAGCGCCAAGTTAAAGGGTGTCCAAGTTTGCC
ATCTCCACACTGAGGGCTCTGCGCCCTATGCTGAAAAAGAATGCTCGGAT
ATTTTTCACACGACGTGTTTTTTCGTGGGTTCCAACATGCGGAAGCCTGT
CGCAGAAGGCCGAGCAGAGTATGATGCTGGTTGTCCTCACCAACAGGGTG
CGGGTTGCGCGTCTCGCGTCCCGCGCCGCCTCAGCTTCCGCTGCCGACCT
CCCTCTCCCCCGTCCTTCCATGTTCCAAGCGGCGCGCAGCATTTGGCATA
CGCCCCACTTAGAGCGCGAGAGTGACGGCGGAATGATCCGCGAGGACGAG
CCGCACCTAAAGCGCATTGGCAGAGATCCCCATCTACCTCAGCGAGATCC
CCAATCTTTTCCGTCGAAGGCGTTTGCCCATCGACGTGGCGTTGGTTCAG
GTGTCGCCTCCGGACAAGCACGGCTTTTGCTCTCTGGGCACGAGCGTGGA
TATCATGAGGGCAGGGGTGCAATGCGCAAAGCACGTGGTGGGCCATGTTA
ACGCCAAGATGCCTCGGACGTTGGGGGATGGTCTGGTCCACATTTCCCAG
TTCGACCGGGTGTTCGAGTAAGCCCGTGTATGTAAAAAGTGCGCTCGAAG
CTGTCACAGGCATTGAATCTGGCCAGCGTGTCGTCATCCAAGGCGCAGTG
GCCACGCCCACCCTCCTCATCGACGCTATGACCCACCATGGGAAGAGCGC
CAAGTTAAAGGGTGTCCAAGTTTGCCATCTCCACACTGAGGGCTCTGCGC
CCTATGCTGAAAAAGAATGCTCGGATATTTTTCACACGACGTGTTTTTTC
GTGGGTTCCAACATGCGGAAGCCTGTCGCAGAAGGCCGAGCAGAGTATGA
TGCTGGTTGTCCTCACCAACAGGGTGCGGGTTGCGCGTCTCGCGTCCCGC
GCCGCCTCAGCTTCCGCTGCCGACCTCCCTCTCCCCCGTCCTTCCATGTT
CCAAGCGGCGCGCAGCATTTGGCATACGCCCCACTTAGAGCGCGAGAGTG
ACGGCGGAATGATCCGCGAGGACGAGCCGCACCTAAAGCGCATTGGCAGA
GATCCCCATCTACCTCAGCGAGATCCCCAATCTTTTCCGTCGAAGGCGTT
TGCCCATCGACGTGGCGTTGGTTCAGGTGTCGCCTCCGGACAAGCACGGC
TTTTGCTCTCTGGGCACGAGCGTGGATATCATGAGGGCAGGGGTGCAATG
CGCAAAGCACGTGGTGGGCCATGTTAACGCCAAGATGCCTCGGACGTTGG
GGGATGGTCTGGTCCACATTTCCCAGTTCGACCGGGTGTTCGAGTAAGCC
CGTGTATGTAAAAAGTGCGCTCGAAGCTGTCACAGGCATTGAATCTGGCC
AGCGTGTCGTCATCCAAGGCGCAGTGGCCACGCCCACCCTCCTCATCGAC
GCTATGACCCACCATGGGAAGAGCGCCAAGTTAAAGGGTGTCCAAGTTTG
CCATCTCCACACTGAGGGCTCTGCGCCCTATGCTGAAAAAGAATGCTCGG
ATATTTTTCACACGACGTGTTTTTTCGTGGGTTCCAACATGCGGAAGCCT
GTCGCAGAAGGCCGAGCAGAGTATGATGCTGGTTGTCCTCACCAACAGGG
TGCGGGTTGCGCGTCTCGCGTCCCGCGCCGCCTCAGCTTCCGCTGCCGAC
CTCCCTCTCCCCCGTCCTTCCATGTTCCAAGCGGCGCGCAGCATTTGGCA
TACGCCCCACTTAGAGCGCGAGAGTGACGGCGGAATGATCCGCGAGGACG
AGCCGCACCTAAAGCGCATTGGCAGAGA
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Synonyms
Publications