jgi.p|Nanoce1779_2|626456, mRNA_10882 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|626456
Unique Name	mRNA_10882
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2086
Alignment location	scaffold_79:14625..16802 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	626542
Track	FilteredModels2
ProteinId	626456

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_79	supercontig	scaffold_79:14625..16802 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626456	gene_10882	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626456	mRNA_10882-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10882	CDS_10882	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_79:14625..16802+
coding sequence from alignment at scaffold_79:14625..16802+

mRNA sequence

>mRNA_10882 ID=mRNA_10882|Name=jgi.p|Nanoce1779_2|626456|organism=Nannochloropsis oceanica|type=mRNA|length=2086bp
CAGCGTTGTTCCCTTTCACCTCGGGTGTGGGGAGGTTGACAAATCGGCCT
CAGATGAGGCCTCATCGTCTCTCCCGCCGGACAGACTGATGAATGATCTG
TCAAATATTTCTATACACTGAAAGGATTGACCATGTTTAAAATCGACCTC
ACAAAATAATCAATATAAATATGTATATTTGTGAAGAAAACATGTCATCG
ATCGACAAAATCTCGTCGGGCAATACCGATCCGACACATGATAACGGGCT
TTCGTCATTTCCGAAGCCACCGAACAGGGATTATATGATCAATTTGATGG
AGTTTTTGCTCCCTCTCTCTCTCTCTCTCCTCACTCGTACCGTAGGTAGC
CAAAGTAACAGAAGATGACCTGGTTCACTAAGATCATGTCATGCTCTGCT
TGATCACTTTGCATGTTGACCATGTGCTCACCGTTCTCGTCCTCGACTCT
ACCACCGTTGTACCGTCTTGACAGGATGGATCAAGACGAGCTCGTGGAGG
TCGTGCCAGGATGGCCCCCTCCTCAAACAAAACGCTGGACCTCTCTTATG
ACAAAATTTGTCCCGAAATGCTGCCGAGGGAGGGTTTATTGGGCAGTGAC
GGTCGTGCTGATTGTGTGGTATTCGCTGCGATTTACACGTAAGCCACCAT
TATTGGCCATGAGTCGTTCCAATCCATCCACCTTTGCTTGCCAGGGATAC
TCTTTGGACACACGGCGGTGTATTTTCCAGAATGTCGTCGTGCAAAGAGG
CGTAATCTACTACTACGCAGAGGACCCGCTTGTCGCGACGGTGCCTCCTA
TGCTCTGCTCAATGGTCAATATGCCTGAGATATATGCGGCCCCCTGCGAT
GTCCGCGTCATCTCCGACCCCACAGCCATTGCCACCATCCTCGCCCAAAC
AAACAAGACAGAGAATTTTAATCTAGGCCTCGCCTTGCATCGCCTAAACC
CGGGCAATGCCTACCATTTGCTGTTTGAAGACATGATACCTGCCATGGCC
ATGATTTACAATGCAAGCCACATCACCAGCAATGACCCAGTTCCCGCCAT
TCTCCACACGCTTAAGCAGCAAGACGTGGGTATCTTCCTCACCGACCATC
ACGCTGGCACGCTCATGGACAGGATTTTTTGGAAAGAGTTTTACCCAGAG
GTGACCGTGCTGCCCTTGTCGAATAATGTGTCCTACCACGTCAAGACCCT
TGTGGTTGGTACAAGAACGAATTGCGTTCATTGGAACCACTGCAAAGTCA
CGAACCGCACCCGTGGTATTTTCGACCCACCCGAAGCTGCCGCGGCTCTA
AGAAAAGTCGTCTTTCATCGGTACGGCATCGTTGAAGAAGGAGACGACAC
TGCTGCTCCTGCTTCTGCTCCTGCTGCTGCTGCTGCTGCTCCTGCTCCTG
CTGCTGCTCCTGCTGTTTTTACCCCTACTCCTCCTCGGCGAGTAGGTCCA
CCAAGAGTCACGCTCATCCGACGCTCTACCACTCGGCGCATCCGAAATTT
AGAAGAAGTACGGAGCACGATTGAGAGCGTAATGGGTGTTTCCCCCCACG
TTGTGGACATGTCAGATCTCGGCATCAAAGATCAGGTCTTGCTCGCGCAC
AACACTGATATTTTCATCCTCGTCCATGGCGGAGCTATGGCAAATCTCCT
TTGGCTTCCGCCTCGCGCGTTAATCATCGATATCTACCCACATGGTTTCC
TTATTTCCTACCATAGTAGCATCATACATTGGATTCGAAAGGCCCTCGAG
CCGGTCATCGAATTGGGACATATGCCTTTTCAAATAGAGACGGCGGAGGG
ACAGGAGCTCTTGACGGGACCAATGGTACCCGGATGTGTGTGTCGCTCCA
TTCCTTGTCAGATACACGTGTTTGGGACCTCGGCGCTTATTAATGTGGAT
GTGGCGAGGTTCAAGGAGCATTTGAAGGAGGGGTTCAGGGCGTGGAAGGG
AGCACAGAGGGAAAGAGGGAGTTATGAGAAGCCGGTGACACCCGATGAGT
TCGAGAGGAGTCAGGAAGAGATAGAAAGGAGGAGAGCGGCGGCGCCTGGT
TATAGTTCGGCGCCGTTGTGCTGGGAGGGGCCTTAG

protein sequence of jgi.p|Nanoce1779_2|626456

>mRNA_10882-protein ID=mRNA_10882-protein|Name=jgi.p|Nanoce1779_2|626456|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MLTMCSPFSSSTLPPLYRLDRMDQDELVEVVPGWPPPQTKRWTSLMTKFV
PKCCRGRVYWAVTVVLIVWYSLRFTRKPPLLAMSRSNPSTFACQGYSLDT
RRCIFQNVVVQRGVIYYYAEDPLVATVPPMLCSMVNMPEIYAAPCDVRVI
SDPTAIATILAQTNKTENFNLGLALHRLNPGNAYHLLFEDMIPAMAMIYN
ASHITSNDPVPAILHTLKQQDVGIFLTDHHAGTLMDRIFWKEFYPEVTVL
PLSNNVSYHVKTLVVGTRTNCVHWNHCKVTNRTRGIFDPPEAAAALRKVV
FHRYGIVEEGDDTAAPASAPAAAAAAPAPAAAPAVFTPTPPRRVGPPRVT
LIRRSTTRRIRNLEEVRSTIESVMGVSPHVVDMSDLGIKDQVLLAHNTDI
FILVHGGAMANLLWLPPRALIIDIYPHGFLISYHSSIIHWIRKALEPVIE
LGHMPFQIETAEGQELLTGPMVPGCVCRSIPCQIHVFGTSALINVDVARF
KEHLKEGFRAWKGAQRERGSYEKPVTPDEFERSQEEIERRRAAAPGYSSA
PLCWEGP*

mRNA from alignment at scaffold_79:14625..16802+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10882 ID=mRNA_10882|Name=jgi.p|Nanoce1779_2|626456|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp|location=Sequence derived from alignment at scaffold_79:14625..16802+ (Nannochloropsis oceanica)
CAGCGTTGTTCCCTTTCACCTCGGGTGTGGGGAGGTTGACAAATCGGCCT
CAGATGAGGCCTCATCGTCTCTCCCGCCGGACAGACTGATGAATGATCTG
TCAAATATTTCTATACACTGAAAGGATTGACCATGTTTAAAATCGACCTC
ACAAAATAATCAATATAAATATGTATATTTGTGAAGAAAACATGTCATCG
ATCGACAAAATCTCGTCGGGCAATACCGATCCGACACATGATAACGGGCT
TTCGTCATTTCCGAAGCCACCGAACAGGGATTATATGATCAATTTGATGG
AGTTTTTGCTCCCTCTCTCTCTCTCTCTCCTCACTCGTACCGTAGGTAGC
CAAAGTAACAGAAGATGACCTGGTTCACTAAGATCATGTCATGCTCTGCT
TGATCACTTTGCATGTTGACCATGTGCTCACCGTTCTCGTCCTCGACTCT
ACCACCGTTGTACCGTCTTGACAGGATGGATCAAGACGAGCTCGTGGAGG
TCGTGCCAGGTGAGTACTTGCGTGTCACAGGAGACGCAACATCCACATCG
CAATGGATTATTGGTTGAGATTCTTCTTCCCTTCACGCACACACTGGACA
GGATGGCCCCCTCCTCAAACAAAACGCTGGACCTCTCTTATGACAAAATT
TGTCCCGAAATGCTGCCGAGGGAGGGTTTATTGGGCAGTGACGGTCGTGC
TGATTGTGTGGTATTCGCTGCGATTTACACGTAAGCCACCATTATTGGCC
ATGAGTCGTTCCAATCCATCCACCTTTGCTTGCCAGGGATACTCTTTGGA
CACACGGCGGTGTATTTTCCAGAATGTCGTCGTGCAAAGAGGCGTAATCT
ACTACTACGCAGAGGACCCGCTTGTCGCGACGGTGCCTCCTATGCTCTGC
TCAATGGTCAATATGCCTGAGATATATGCGGCCCCCTGCGATGTCCGCGT
CATCTCCGACCCCACAGCCATTGCCACCATCCTCGCCCAAACAAACAAGA
CAGAGAATTTTAATCTAGGCCTCGCCTTGCATCGCCTAAACCCGGGCAAT
GCCTACCATTTGCTGTTTGAAGACATGATACCTGCCATGGCCATGATTTA
CAATGCAAGCCACATCACCAGCAATGACCCAGTTCCCGCCATTCTCCACA
CGCTTAAGCAGCAAGACGTGGGTATCTTCCTCACCGACCATCACGCTGGC
ACGCTCATGGACAGGATTTTTTGGAAAGAGTTTTACCCAGAGGTGACCGT
GCTGCCCTTGTCGAATAATGTGTCCTACCACGTCAAGACCCTTGTGGTTG
GTACAAGAACGAATTGCGTTCATTGGAACCACTGCAAAGTCACGAACCGC
ACCCGTGGTATTTTCGACCCACCCGAAGCTGCCGCGGCTCTAAGAAAAGT
CGTCTTTCATCGGTACGGCATCGTTGAAGAAGGAGACGACACTGCTGCTC
CTGCTTCTGCTCCTGCTGCTGCTGCTGCTGCTCCTGCTCCTGCTGCTGCT
CCTGCTGTTTTTACCCCTACTCCTCCTCGGCGAGTAGGTCCACCAAGAGT
CACGCTCATCCGACGCTCTACCACTCGGCGCATCCGAAATTTAGAAGAAG
TACGGAGCACGATTGAGAGCGTAATGGGTGTTTCCCCCCACGTTGTGGAC
ATGTCAGATCTCGGCATCAAAGATCAGGTCTTGCTCGCGCACAACACTGA
TATTTTCATCCTCGTCCATGGCGGAGCTATGGCAAATCTCCTTTGGCTTC
CGCCTCGCGCGTTAATCATCGATATCTACCCACATGGTTTCCTTATTTCC
TACCATAGTAGCATCATACATTGGATTCGAAAGGCCCTCGAGCCGGTCAT
CGAATTGGGACATATGCCTTTTCAAATAGAGACGGCGGAGGGACAGGAGC
TCTTGACGGGACCAATGGTACCCGGATGTGTGTGTCGCTCCATTCCTTGT
CAGATACACGTGTTTGGGACCTCGGCGCTTATTAATGTGGATGTGGCGAG
GTTCAAGGAGCATTTGAAGGAGGGGTTCAGGGCGTGGAAGGGAGCACAGA
GGGAAAGAGGGAGTTATGAGAAGCCGGTGACACCCGATGAGTTCGAGAGG
AGTCAGGAAGAGATAGAAAGGAGGAGAGCGGCGGCGCCTGGTTATAGTTC
GGCGCCGTTGTGCTGGGAGGGGCCTTAG

Coding sequence (CDS) from alignment at scaffold_79:14625..16802+

>mRNA_10882 ID=mRNA_10882|Name=jgi.p|Nanoce1779_2|626456|organism=Nannochloropsis oceanica|type=CDS|length=3348bp|location=Sequence derived from alignment at scaffold_79:14625..16802+ (Nannochloropsis oceanica)
ATGTTGACCATGTGCTCACCGTTCTCGTCCTCGACTCTACCACCGTTGTA
CCGTCTTGACAGGATGGATCAAGACGAGCTCGTGGAGGTCGTGCCAGGAT
GGCCCCCTCCTCAAACAAAACGCTGGACCTCTCTTATGACAAAATTTGTC
CCGAAATGCTGCCGAGGGAGGGTTTATTGGGCAGTGACGGTCGTGCTGAT
TGTGTGGTATTCGCTGCGATTTACACGTAAGCCACCATTATTGGCCATGA
GTCGTTCCAATCCATCCACCTTTGCTTGCCAGGGATACTCTTTGGACACA
CGGCGGTGTATTTTCCAGAATGTCGTCGTGCAAAGAGGCGTAATCTACTA
CTACGCAGAGGACCCGCTTGTCGCGACGGTGCCTCCTATGCTCTGCTCAA
TGGTCAATATGCCTGAGATATATGCGGCCCCCTGCGATGTCCGCGTCATC
TCCGACCCCACAGCCATTGCCACCATCCTCGCCCAAACAAACAAGACAGA
GAATTTTAATCTAGGCCTCGCCTTGCATCGCCTAAACCCGGGCAATGCCT
ACCATTTGCTGTTTGAAGACATGATACCTGCCATGGCCATGATTTACAAT
GCAAGCCACATCACCAGCAATGACCCAGTTCCCGCCATTCTCCACACGCT
TAAGCAGCAAGACGTGGGTATCTTCCTCACCGACCATCACGCTGGCACGC
TCATGGACAGGATTTTTTGGAAAGAGTTTTACCCAGAGGTGACCGTGCTG
CCCTTGTCGAATAATGTGTCCTACCACGTCAAGACCCTTGTGGTTGGTAC
AAGAACGAATTGCGTTCATTGGAACCACTGCAAAGTCACGAACCGCACCC
GTGGTATTTTCGACCCACCCGAAGCTGCCGCGGCTCTAAGAAAAGTCGTC
TTTCATCGGTACGGCATCGTTGAAGAAGGAGACGACACTGCTGCTCCTGC
TTCTGCTCCTGCTGCTGCTGCTGCTGCTCCTGCTCCTGCTGCTGCTCCTG
CTGTTTTTACCCCTACTCCTCCTCGGCGAGTAGGTCCACCAAGAGTCACG
CTCATCCGACGCTCTACCACTCGGCGCATCCGAAATTTAGAAGAAGTACG
GAGCACGATTGAGAGCGTAATGGGTGTTTCCCCCCACGTTGTGGACATGT
CAGATCTCGGCATCAAAGATCAGGTCTTGCTCGCGCACAACACTGATATT
TTCATCCTCGTCCATGGCGGAGCTATGGCAAATCTCCTTTGGCTTCCGCC
TCGCGCGTTAATCATCGATATCTACCCACATGGTTTCCTTATTTCCTACC
ATAGTAGCATCATACATTGGATTCGAAAGGCCCTCGAGCCGGTCATCGAA
TTGGGACATATGCCTTTTCAAATAGAGACGGCGGAGGGACAGGAGCTCTT
GACGGGACCAATGGTACCCGGATGTGTGTGTCGCTCCATTCCTTGTCAGA
TACACGTGTTTGGGACCTCGGCGCTTATTAATGTGGATGTGGCGAGGTTC
AAGGAGCATTTGAAGGAGGGGTTCAGGGCGTGGAAGGGAGCACAGAGGGA
AAGAGGGAGTTATGAGAAGCCGGTGACACCCGATGAGTTCGAGAGGAGTC
AGGAAGAGATAGAAAGGAGGAGAGCGGCGGCGCCTGGTTATAGTTCGGCG
CCGTTGTGCTGGGAGGGGCCTTAGATGTTGACCATGTGCTCACCGTTCTC
GTCCTCGACTCTACCACCGTTGTACCGTCTTGACAGGATGGATCAAGACG
AGCTCGTGGAGGTCGTGCCAGGATGGCCCCCTCCTCAAACAAAACGCTGG
ACCTCTCTTATGACAAAATTTGTCCCGAAATGCTGCCGAGGGAGGGTTTA
TTGGGCAGTGACGGTCGTGCTGATTGTGTGGTATTCGCTGCGATTTACAC
GTAAGCCACCATTATTGGCCATGAGTCGTTCCAATCCATCCACCTTTGCT
TGCCAGGGATACTCTTTGGACACACGGCGGTGTATTTTCCAGAATGTCGT
CGTGCAAAGAGGCGTAATCTACTACTACGCAGAGGACCCGCTTGTCGCGA
CGGTGCCTCCTATGCTCTGCTCAATGGTCAATATGCCTGAGATATATGCG
GCCCCCTGCGATGTCCGCGTCATCTCCGACCCCACAGCCATTGCCACCAT
CCTCGCCCAAACAAACAAGACAGAGAATTTTAATCTAGGCCTCGCCTTGC
ATCGCCTAAACCCGGGCAATGCCTACCATTTGCTGTTTGAAGACATGATA
CCTGCCATGGCCATGATTTACAATGCAAGCCACATCACCAGCAATGACCC
AGTTCCCGCCATTCTCCACACGCTTAAGCAGCAAGACGTGGGTATCTTCC
TCACCGACCATCACGCTGGCACGCTCATGGACAGGATTTTTTGGAAAGAG
TTTTACCCAGAGGTGACCGTGCTGCCCTTGTCGAATAATGTGTCCTACCA
CGTCAAGACCCTTGTGGTTGGTACAAGAACGAATTGCGTTCATTGGAACC
ACTGCAAAGTCACGAACCGCACCCGTGGTATTTTCGACCCACCCGAAGCT
GCCGCGGCTCTAAGAAAAGTCGTCTTTCATCGGTACGGCATCGTTGAAGA
AGGAGACGACACTGCTGCTCCTGCTTCTGCTCCTGCTGCTGCTGCTGCTG
CTCCTGCTCCTGCTGCTGCTCCTGCTGTTTTTACCCCTACTCCTCCTCGG
CGAGTAGGTCCACCAAGAGTCACGCTCATCCGACGCTCTACCACTCGGCG
CATCCGAAATTTAGAAGAAGTACGGAGCACGATTGAGAGCGTAATGGGTG
TTTCCCCCCACGTTGTGGACATGTCAGATCTCGGCATCAAAGATCAGGTC
TTGCTCGCGCACAACACTGATATTTTCATCCTCGTCCATGGCGGAGCTAT
GGCAAATCTCCTTTGGCTTCCGCCTCGCGCGTTAATCATCGATATCTACC
CACATGGTTTCCTTATTTCCTACCATAGTAGCATCATACATTGGATTCGA
AAGGCCCTCGAGCCGGTCATCGAATTGGGACATATGCCTTTTCAAATAGA
GACGGCGGAGGGACAGGAGCTCTTGACGGGACCAATGGTACCCGGATGTG
TGTGTCGCTCCATTCCTTGTCAGATACACGTGTTTGGGACCTCGGCGCTT
ATTAATGTGGATGTGGCGAGGTTCAAGGAGCATTTGAAGGAGGGGTTCAG
GGCGTGGAAGGGAGCACAGAGGGAAAGAGGGAGTTATGAGAAGCCGGTGA
CACCCGATGAGTTCGAGAGGAGTCAGGAAGAGATAGAAAGGAGGAGAGCG
GCGGCGCCTGGTTATAGTTCGGCGCCGTTGTGCTGGGAGGGGCCTTAG

Synonyms

Publications