scaffold_251, scaffold_251 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_251
Unique Name	scaffold_251
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	18374
Alignment location	jgi.p\|Nanoce1779_2\|204823:10706..12889 +
Alignment location	jgi.p\|Nanoce1779_2\|204823:10706..12889 +
Alignment location	CDS_12347:11279..12757 +
Alignment location	jgi.p\|Nanoce1779_2\|621394:4331..5239 +
Alignment location	jgi.p\|Nanoce1779_2\|621394:4331..5239 +
Alignment location	CDS_12344:4546..5226 +
Alignment location	jgi.p\|Nanoce1779_2\|621401:5280..7811 -
Alignment location	jgi.p\|Nanoce1779_2\|621401:5280..7811 -
Alignment location	CDS_12345:6553..7171 -
Alignment location	CDS_12345:5551..6470 -
Alignment location	jgi.p\|Nanoce1779_2\|621403:9595..10798 +
Alignment location	jgi.p\|Nanoce1779_2\|621403:9595..10798 +
Alignment location	CDS_12346:9616..10743 +
Alignment location	jgi.p\|Nanoce1779_2\|621416:14631..16336 +
Alignment location	jgi.p\|Nanoce1779_2\|621416:14631..16336 +
Alignment location	CDS_12349:14661..15224 +
Alignment location	jgi.p\|Nanoce1779_2\|635409:1328..3944 -
Alignment location	jgi.p\|Nanoce1779_2\|635409:1328..3944 -
Alignment location	CDS_12343:3291..3944 -
Alignment location	CDS_12343:2800..2805 -
Alignment location	jgi.p\|Nanoce1779_2\|676282:603..4235 +
Alignment location	jgi.p\|Nanoce1779_2\|676282:603..4235 +
Alignment location	CDS_12342:622..670 +
Alignment location	CDS_12342:914..1821 +
Alignment location	jgi.p\|Nanoce1779_2\|204823:11279..12757 +
Alignment location	jgi.p\|Nanoce1779_2\|621394:4546..5226 +
Alignment location	jgi.p\|Nanoce1779_2\|621401:5551..7171 -
Alignment location	jgi.p\|Nanoce1779_2\|621403:9616..10743 +
Alignment location	jgi.p\|Nanoce1779_2\|621416:14661..15224 +
Alignment location	jgi.p\|Nanoce1779_2\|635409:2800..3944 -
Alignment location	jgi.p\|Nanoce1779_2\|676282:622..1821 +
Alignment location	ncniL042:604..16336 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|204823	gene	jgi.p\|Nanoce1779_2\|204823:10706..12889 +
jgi.p\|Nanoce1779_2\|204823	mRNA	jgi.p\|Nanoce1779_2\|204823:10706..12889 +
CDS_12347	CDS	CDS_12347:11279..12757 +
jgi.p\|Nanoce1779_2\|621394	gene	jgi.p\|Nanoce1779_2\|621394:4331..5239 +
jgi.p\|Nanoce1779_2\|621394	mRNA	jgi.p\|Nanoce1779_2\|621394:4331..5239 +
CDS_12344	CDS	CDS_12344:4546..5226 +
jgi.p\|Nanoce1779_2\|621401	gene	jgi.p\|Nanoce1779_2\|621401:5280..7811 -
jgi.p\|Nanoce1779_2\|621401	mRNA	jgi.p\|Nanoce1779_2\|621401:5280..7811 -
CDS_12345	CDS	CDS_12345:6553..7171 -
CDS_12345	CDS	CDS_12345:5551..6470 -
jgi.p\|Nanoce1779_2\|621403	gene	jgi.p\|Nanoce1779_2\|621403:9595..10798 +
jgi.p\|Nanoce1779_2\|621403	mRNA	jgi.p\|Nanoce1779_2\|621403:9595..10798 +
CDS_12346	CDS	CDS_12346:9616..10743 +
jgi.p\|Nanoce1779_2\|621416	gene	jgi.p\|Nanoce1779_2\|621416:14631..16336 +
jgi.p\|Nanoce1779_2\|621416	mRNA	jgi.p\|Nanoce1779_2\|621416:14631..16336 +
CDS_12349	CDS	CDS_12349:14661..15224 +
jgi.p\|Nanoce1779_2\|635409	gene	jgi.p\|Nanoce1779_2\|635409:1328..3944 -
jgi.p\|Nanoce1779_2\|635409	mRNA	jgi.p\|Nanoce1779_2\|635409:1328..3944 -
CDS_12343	CDS	CDS_12343:3291..3944 -
CDS_12343	CDS	CDS_12343:2800..2805 -
jgi.p\|Nanoce1779_2\|676282	gene	jgi.p\|Nanoce1779_2\|676282:603..4235 +
jgi.p\|Nanoce1779_2\|676282	mRNA	jgi.p\|Nanoce1779_2\|676282:603..4235 +
CDS_12342	CDS	CDS_12342:622..670 +
CDS_12342	CDS	CDS_12342:914..1821 +
jgi.p\|Nanoce1779_2\|204823	polypeptide	jgi.p\|Nanoce1779_2\|204823:11279..12757 +
jgi.p\|Nanoce1779_2\|621394	polypeptide	jgi.p\|Nanoce1779_2\|621394:4546..5226 +
jgi.p\|Nanoce1779_2\|621401	polypeptide	jgi.p\|Nanoce1779_2\|621401:5551..7171 -
jgi.p\|Nanoce1779_2\|621403	polypeptide	jgi.p\|Nanoce1779_2\|621403:9616..10743 +
jgi.p\|Nanoce1779_2\|621416	polypeptide	jgi.p\|Nanoce1779_2\|621416:14661..15224 +
jgi.p\|Nanoce1779_2\|635409	polypeptide	jgi.p\|Nanoce1779_2\|635409:2800..3944 -
jgi.p\|Nanoce1779_2\|676282	polypeptide	jgi.p\|Nanoce1779_2\|676282:622..1821 +
ncniL042	syntenic_region	ncniL042:604..16336 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications