jgi.p|Nanoce1779_2|676282, mRNA_12342 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|676282
Unique Name	mRNA_12342
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3390
Alignment location	scaffold_251:603..4235 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	676368
Track	FilteredModels2
ProteinId	676282

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_251	supercontig	scaffold_251:603..4235 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|676282	gene_12342	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|676282	mRNA_12342-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12342	CDS_12342	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_251:603..4235+
coding sequence from alignment at scaffold_251:603..4235+

mRNA sequence

>mRNA_12342 ID=mRNA_12342|Name=jgi.p|Nanoce1779_2|676282|organism=Nannochloropsis oceanica|type=mRNA|length=3390bp
AACAGCACACACACATCACATGCGGCTACCACAACTCCTGCTGGTGGTGG
CAACACTGGTGTGCGATGGTGGTGGCGGTGGGTCGGCGGCTGCGGGAGCA
GTGGATGCGGGGTGGGCCACAATCATCGAAGGCCTGAAGAATGGCTGCGC
CAGTGGCCTGGCCGCTGCGTGTGCCAAACTTCTCCTCCAACCCTTTGACA
CGGTCAAGACCCTTCAGCAGGCCAACAAGGGCTCGCTAGGCATGTTTGAG
GCAGCTCGAGACCTGGCGGCGCGGCGGGGCGTCCGCTCCCTCTACACGGG
CCTCGGGGTGACCCTCGTCGGCTCCATCCCCGCCGTCTCCATCTACTTTG
GCGTCTACCAGGCCGTCAAGAAGGCCTTGCTGCAAGCCCTCCCTCCCACC
CTGGGTTGGACCCTGCTAGGCGTGGCGGCTTCGGCCGGAGTGGGCAACAC
TGTCGCCTCCGTCTTTCGGGTACCGTACGAGGTGGTGAAACAGCGGCTGC
AGGCGGGCATGTACAGCAGCACAGGGGAGGCTTTGCGCACCATGTACCGG
ACGGAGGGTGGGCTGGGCGCTTTCTTTGGGAGCAGCGGCGTAGCTTCGCA
GATCATGCGGGATGTGCCCTATGCCATCGTCACCCTGCTCACTTACGAAT
CCCTCCGACGGGCTCGAGCAGCGGCCCGGCGAAAAGCCGGAGGGGGAAAG
CTGTCCACGCCCTTGGAGGACTCGATGATGGGAGCCTTTGCTGGGGGGGT
GGGCTCCCTCGTGTCGAATCCCATGGACGTGGTCAAGACGCGCGTTATGA
CCCAACCTGGCCTCTACCCCACCGTATGGTCGGCCGTGCGGGGGCTATGG
GCGGACGAGGGGGCGGCCGCGTTCCTCAAGGGCACAGTGCCGCGGCTACT
GCACAAGGTGCCGGCCAATGCCATCTTTTTTGCCACGTACGAGATCTTTC
GGGGGCTGTTGCGCGTGCAGGGTTAGAGAGGGAGAGGGGGAGGGAGGGAA
GGAAGAGAGGATTAAGGACGAGACACACAGACTCACCAGTCTTGACAAAG
CAAAAAGATATACGGAAAGTTTGCATCTACGAGAAGGGATCGAGGGGGAA
AGAAGGAGGAGACCATGTGTCTCTTCCCTCTCTCTCTTTCTCTGGCTGTT
TTGCGAGTCAAACACACACACACACACACACACACAAATCTACTCTTTCA
TTCTGTCGGTTGAATATTTCCTTATTTTTTATCAGTGAGACATCCGTCTA
GCCCCTCTCTTTCCTCCCCCTTTATAAGCCCCTCATTTCCTCCTCCCTCC
TCCCCCTCTCCTCCTTCAACCTTTCCCCCCTCCCTCCTGACCATCAGCTG
CTGCTCAAAGGGAGGGCTGGCGGGACAGGGCGACAAGAGAGGGAGGGGGA
AAGAATTCGGCGTAGGTAAGGCCTCCCATTGCACTTGCCCTTCGCTGTTA
AGCTTTTCCCTCGAATTTCCCTCCCCGCCTTCCTCCCTTTCCTCGCAGAC
ATTGTCTGGAGTCTGATCGAGGGAGAGGCTATGCAGGAGGGAGGCACTGC
TCTCCAAGGCGGAGGAGGCGGGCGCGGTTGTCATACTGGCGGTAGACAAG
GAGTCGGGCCGTTTCTTCCTCGGGCGCTTGCCCCCATGTCTGGGCTTGCC
TGCGACTGCTGTCGCTGCTGCCCCGTCGGTGGTGGTGGTCATCGTCGCTG
CTGCGGAGGGCGGTGACATGACTGATGCTCCCGGGGACGACGAGGAGCAG
GGAGCAGAGGCCACGGGAGAAGATAAAGAGTGCACGAGTGTCTGTCCTTC
CTCCCTGCAGTGTCGCTGGTGAGTCGTGACCACATCTCCTCCTCCCTCCC
CCACCGGCGGCTTTGTCTCAATAGTAGTCCTGCTGGTGGTGCCGGAGGAG
GAGGTGGCGAAGGGCGAGCGGAGCAAGGCCGTCAGCGAGTCTTCCCGCGT
CACCTCAGGCCTGGAAAGGGAAAGGGAGGGCGGAAGAGGAGAAGGGAGGA
ATGTCGCATTGCTTGGAGTGTCAATGCTGTTATTGCTCCTGCTGTTGCTT
CTGTTGACGTTCGGTGTGGCAGAGGGAGAAGGAGGAGAAGGAGGAGGAGA
AAGAGTAGGGTAAGAGGGCCCCGGTAGGAGGTGGGGTAGGAGGAAAGGCA
GTTCTTCCAGCGTCAGCGACAGACTGTTCACGGTGGTGTCGTTGTCGTTG
TTGTTGTTGTTACTGCTGCTGGTGTAGTTGGTGCTAGTGGCGGTGACAAT
GATCCTCCTGCTGCTTGGTGTTTCTGCGCCTGTATCCACACCTTCTTCCT
CTTTGCTATTGCTGCTACCGCTGCTGCTGCTATTACCGCCATTGCTGTTC
AAATGATGTATCAGCAAGGCAGCAGGGGTGAGGGGGAGGGAGGCGGGCAA
GTCCTTGGGGAGCTTGTGCCGCACCAAGTCCAACCGAGAGGCTACCTCGG
GCACCCGCATGAGGCTGTCGGCGGTGAGACGCTGGGCAGGATCAGGATGT
AGGAGGCGGAGGAGGATCAGGTCTCGCAATTCCTGAGAGTAGAAGTCATC
CGTGTCCAGCCGTGCCTGAAACTGGCGCTTGAGCACGGCCCGCCTTAGGT
AAAGAGGGTTGGGCCCATCGAAGGGCTGTACGAGGGTCGTGAGCTCGAAG
AGCGTGCAACCGAGGGAGTATAGATCGGCGGCGAATCCGTATGGCTTGCC
CTCCCAGATCTCAGGGGCCATGTAGGGCAGCGTACCCATGACCGATTGCA
CCTCGCCTGTCTCGTCGTCCAGGGACTTGGACACGTTCATGTCCCCCAGC
TTGGCATTCCCCTCCTCGTCCAGCAGAATGTTCGCGGGCTTGATGTCACG
ATGGAGTACACGCAAGGCATGCAATGCTGACAGGGCCTCCAAGCACTGCA
CCAAGTATACCCACACCACGCGTTCGTCCACTCGCTCCCCCCTCGTCCGG
TACCGCTGAATCTTGCGGGCCAGGTCCTGGAAGCCGCAGTACTCCATAAC
AATGCACAGGTGTGTAGGTCCGTCCATGAAAGTCTCGTAGCAGCGGATGA
TGCGCGGGTGGCGAAAGGAGGCGAGTAGCCGAATTTCATTCAAAGCCATT
GCCAGATCACGTTGATCCAGACCATCAAGATTGACGCGCTTCATAGCGTA
TGTGTGGTGGTCGGCCTTGCGCACAACTTGGTACACGCTTCCATAAGCAC
CCAGACCGAGTTTGGCCAAGACGTGGAAGTCTTGAATGGTCGTGAAAGAG
GAAGAAGGGGGGTAGGAGGGGAAGGAAGGCAAGGAGGAGAAGGAGGAGGG
GGCAGATGTCGAGTCTCCCATACGACTGAGCTTGAGGCCCTCCTTGGGGG
CGGAGGAGCTTGGGTGGATTACACACGTCAAGATTACTGT

protein sequence of jgi.p|Nanoce1779_2|676282

>mRNA_12342-protein ID=mRNA_12342-protein|Name=jgi.p|Nanoce1779_2|676282|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MRLPQLLLVVATLVCDGGGGGSAAAGAVDAGWATIIEGLKNGCASGLAAA
CAKLLLQPFDTVKTLQQANKGSLGMFEAARDLAARRGVRSLYTGLGVTLV
GSIPAVSIYFGVYQAVKKALLQALPPTLGWTLLGVAASAGVGNTVASVFR
VPYEVVKQRLQAGMYSSTGEALRTMYRTEGGLGAFFGSSGVASQIMRDVP
YAIVTLLTYESLRRARAAARRKAGGGKLSTPLEDSMMGAFAGGVGSLVSN
PMDVVKTRVMTQPGLYPTVWSAVRGLWADEGAAAFLKGTVPRLLHKVPAN
AIFFATYEIFRGLLRVQG*

mRNA from alignment at scaffold_251:603..4235+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12342 ID=mRNA_12342|Name=jgi.p|Nanoce1779_2|676282|organism=Nannochloropsis oceanica|type=mRNA|length=3633bp|location=Sequence derived from alignment at scaffold_251:603..4235+ (Nannochloropsis oceanica)
AACAGCACACACACATCACATGCGGCTACCACAACTCCTGCTGGTGGTGG
CAACACTGGTGTGCGATGGTGCGGCCATGTTATCTTCAAAGCAATCCAAA
CCCTTAATGATGACCCTGCCTTCCTCCGCCTCTGTCTCCGCCTCCTCCCC
TCCTTGTTGGACTCGCCGTCTCTCCGCCGCCATTGCCACCACTACAACCA
GTCACAATAAGAGAAGAGGAAATGACAACGATGATGCTCTTCTACTCGCT
GCGAACCAGAGAAGAATAGAGGAACAGCAACACGCCTTGTCCTCCCTCCG
CACAACTCGAGGTGGTGGCGGTGGGTCGGCGGCTGCGGGAGCAGTGGATG
CGGGGTGGGCCACAATCATCGAAGGCCTGAAGAATGGCTGCGCCAGTGGC
CTGGCCGCTGCGTGTGCCAAACTTCTCCTCCAACCCTTTGACACGGTCAA
GACCCTTCAGCAGGCCAACAAGGGCTCGCTAGGCATGTTTGAGGCAGCTC
GAGACCTGGCGGCGCGGCGGGGCGTCCGCTCCCTCTACACGGGCCTCGGG
GTGACCCTCGTCGGCTCCATCCCCGCCGTCTCCATCTACTTTGGCGTCTA
CCAGGCCGTCAAGAAGGCCTTGCTGCAAGCCCTCCCTCCCACCCTGGGTT
GGACCCTGCTAGGCGTGGCGGCTTCGGCCGGAGTGGGCAACACTGTCGCC
TCCGTCTTTCGGGTACCGTACGAGGTGGTGAAACAGCGGCTGCAGGCGGG
CATGTACAGCAGCACAGGGGAGGCTTTGCGCACCATGTACCGGACGGAGG
GTGGGCTGGGCGCTTTCTTTGGGAGCAGCGGCGTAGCTTCGCAGATCATG
CGGGATGTGCCCTATGCCATCGTCACCCTGCTCACTTACGAATCCCTCCG
ACGGGCTCGAGCAGCGGCCCGGCGAAAAGCCGGAGGGGGAAAGCTGTCCA
CGCCCTTGGAGGACTCGATGATGGGAGCCTTTGCTGGGGGGGTGGGCTCC
CTCGTGTCGAATCCCATGGACGTGGTCAAGACGCGCGTTATGACCCAACC
TGGCCTCTACCCCACCGTATGGTCGGCCGTGCGGGGGCTATGGGCGGACG
AGGGGGCGGCCGCGTTCCTCAAGGGCACAGTGCCGCGGCTACTGCACAAG
GTGCCGGCCAATGCCATCTTTTTTGCCACGTACGAGATCTTTCGGGGGCT
GTTGCGCGTGCAGGGTTAGAGAGGGAGAGGGGGAGGGAGGGAAGGAAGAG
AGGATTAAGGACGAGACACACAGACTCACCAGTCTTGACAAAGCAAAAAG
ATATACGGAAAGTTTGCATCTACGAGAAGGGATCGAGGGGGAAAGAAGGA
GGAGACCATGTGTCTCTTCCCTCTCTCTCTTTCTCTGGCTGTTTTGCGAG
TCAAACACACACACACACACACACACACAAATCTACTCTTTCATTCTGTC
GGTTGAATATTTCCTTATTTTTTATCAGTGAGACATCCGTCTAGCCCCTC
TCTTTCCTCCCCCTTTATAAGCCCCTCATTTCCTCCTCCCTCCTCCCCCT
CTCCTCCTTCAACCTTTCCCCCCTCCCTCCTGACCATCAGCTGCTGCTCA
AAGGGAGGGCTGGCGGGACAGGGCGACAAGAGAGGGAGGGGGAAAGAATT
CGGCGTAGGTAAGGCCTCCCATTGCACTTGCCCTTCGCTGTTAAGCTTTT
CCCTCGAATTTCCCTCCCCGCCTTCCTCCCTTTCCTCGCAGACATTGTCT
GGAGTCTGATCGAGGGAGAGGCTATGCAGGAGGGAGGCACTGCTCTCCAA
GGCGGAGGAGGCGGGCGCGGTTGTCATACTGGCGGTAGACAAGGAGTCGG
GCCGTTTCTTCCTCGGGCGCTTGCCCCCATGTCTGGGCTTGCCTGCGACT
GCTGTCGCTGCTGCCCCGTCGGTGGTGGTGGTCATCGTCGCTGCTGCGGA
GGGCGGTGACATGACTGATGCTCCCGGGGACGACGAGGAGCAGGGAGCAG
AGGCCACGGGAGAAGATAAAGAGTGCACGAGTGTCTGTCCTTCCTCCCTG
CAGTGTCGCTGGTGAGTCGTGACCACATCTCCTCCTCCCTCCCCCACCGG
CGGCTTTGTCTCAATAGTAGTCCTGCTGGTGGTGCCGGAGGAGGAGGTGG
CGAAGGGCGAGCGGAGCAAGGCCGTCAGCGAGTCTTCCCGCGTCACCTCA
GGCCTGGAAAGGGAAAGGGAGGGCGGAAGAGGAGAAGGGAGGAATGTCGC
ATTGCTTGGAGTGTCAATGCTGTTATTGCTCCTGCTGTTGCTTCTGTTGA
CGTTCGGTGTGGCAGAGGGAGAAGGAGGAGAAGGAGGAGGAGAAAGAGTA
GGGTAAGAGGGCCCCGGTAGGAGGTGGGGTAGGAGGAAAGGCAGTTCTTC
CAGCGTCAGCGACAGACTGTTCACGGTGGTGTCGTTGTCGTTGTTGTTGT
TGTTACTGCTGCTGGTGTAGTTGGTGCTAGTGGCGGTGACAATGATCCTC
CTGCTGCTTGGTGTTTCTGCGCCTGTATCCACACCTTCTTCCTCTTTGCT
ATTGCTGCTACCGCTGCTGCTGCTATTACCGCCATTGCTGTTCAAATGAT
GTATCAGCAAGGCAGCAGGGGTGAGGGGGAGGGAGGCGGGCAAGTCCTTG
GGGAGCTTGTGCCGCACCAAGTCCAACCGAGAGGCTACCTCGGGCACCCG
CATGAGGCTGTCGGCGGTGAGACGCTGGGCAGGATCAGGATGTAGGAGGC
GGAGGAGGATCAGGTCTCGCAATTCCTGAGAGTAGAAGTCATCCGTGTCC
AGCCGTGCCTGAAACTGGCGCTTGAGCACGGCCCGCCTTAGGTAAAGAGG
GTTGGGCCCATCGAAGGGCTGTACGAGGGTCGTGAGCTCGAAGAGCGTGC
AACCGAGGGAGTATAGATCGGCGGCGAATCCGTATGGCTTGCCCTCCCAG
ATCTCAGGGGCCATGTAGGGCAGCGTACCCATGACCGATTGCACCTCGCC
TGTCTCGTCGTCCAGGGACTTGGACACGTTCATGTCCCCCAGCTTGGCAT
TCCCCTCCTCGTCCAGCAGAATGTTCGCGGGCTTGATGTCACGATGGAGT
ACACGCAAGGCATGCAATGCTGACAGGGCCTCCAAGCACTGCACCAAGTA
TACCCACACCACGCGTTCGTCCACTCGCTCCCCCCTCGTCCGGTACCGCT
GAATCTTGCGGGCCAGGTCCTGGAAGCCGCAGTACTCCATAACAATGCAC
AGGTGTGTAGGTCCGTCCATGAAAGTCTCGTAGCAGCGGATGATGCGCGG
GTGGCGAAAGGAGGCGAGTAGCCGAATTTCATTCAAAGCCATTGCCAGAT
CACGTTGATCCAGACCATCAAGATTGACGCGCTTCATAGCGTATGTGTGG
TGGTCGGCCTTGCGCACAACTTGGTACACGCTTCCATAAGCACCCAGACC
GAGTTTGGCCAAGACGTGGAAGTCTTGAATGGTCGTGAAAGAGGAAGAAG
GGGGGTAGGAGGGGAAGGAAGGCAAGGAGGAGAAGGAGGAGGGGGCAGAT
GTCGAGTCTCCCATACGACTGAGCTTGAGGCCCTCCTTGGGGGCGGAGGA
GCTTGGGTGGATTACACACGTCAAGATTACTGT

Coding sequence (CDS) from alignment at scaffold_251:603..4235+

>mRNA_12342 ID=mRNA_12342|Name=jgi.p|Nanoce1779_2|676282|organism=Nannochloropsis oceanica|type=CDS|length=1914bp|location=Sequence derived from alignment at scaffold_251:603..4235+ (Nannochloropsis oceanica)
ATGCGGCTACCACAACTCCTGCTGGTGGTGGCAACACTGGTGTGCGATGG
TGGTGGCGGTGGGTCGGCGGCTGCGGGAGCAGTGGATGCGGGGTGGGCCA
CAATCATCGAAGGCCTGAAGAATGGCTGCGCCAGTGGCCTGGCCGCTGCG
TGTGCCAAACTTCTCCTCCAACCCTTTGACACGGTCAAGACCCTTCAGCA
GGCCAACAAGGGCTCGCTAGGCATGTTTGAGGCAGCTCGAGACCTGGCGG
CGCGGCGGGGCGTCCGCTCCCTCTACACGGGCCTCGGGGTGACCCTCGTC
GGCTCCATCCCCGCCGTCTCCATCTACTTTGGCGTCTACCAGGCCGTCAA
GAAGGCCTTGCTGCAAGCCCTCCCTCCCACCCTGGGTTGGACCCTGCTAG
GCGTGGCGGCTTCGGCCGGAGTGGGCAACACTGTCGCCTCCGTCTTTCGG
GTACCGTACGAGGTGGTGAAACAGCGGCTGCAGGCGGGCATGTACAGCAG
CACAGGGGAGGCTTTGCGCACCATGTACCGGACGGAGGGTGGGCTGGGCG
CTTTCTTTGGGAGCAGCGGCGTAGCTTCGCAGATCATGCGGGATGTGCCC
TATGCCATCGTCACCCTGCTCACTTACGAATCCCTCCGACGGGCTCGAGC
AGCGGCCCGGCGAAAAGCCGGAGGGGGAAAGCTGTCCACGCCCTTGGAGG
ACTCGATGATGGGAGCCTTTGCTGGGGGGGTGGGCTCCCTCGTGTCGAAT
CCCATGGACGTGGTCAAGACGCGCGTTATGACCCAACCTGGCCTCTACCC
CACCGTATGGTCGGCCGTGCGGGGGCTATGGGCGGACGAGGGGGCGGCCG
CGTTCCTCAAGGGCACAGTGCCGCGGCTACTGCACAAGGTGCCGGCCAAT
GCCATCTTTTTTGCCACGTACGAGATCTTTCGGGGGCTGTTGCGCGTGCA
GGGTTAGATGCGGCTACCACAACTCCTGCTGGTGGTGGCAACACTGGTGT
GCGATGGTGGTGGCGGTGGGTCGGCGGCTGCGGGAGCAGTGGATGCGGGG
TGGGCCACAATCATCGAAGGCCTGAAGAATGGCTGCGCCAGTGGCCTGGC
CGCTGCGTGTGCCAAACTTCTCCTCCAACCCTTTGACACGGTCAAGACCC
TTCAGCAGGCCAACAAGGGCTCGCTAGGCATGTTTGAGGCAGCTCGAGAC
CTGGCGGCGCGGCGGGGCGTCCGCTCCCTCTACACGGGCCTCGGGGTGAC
CCTCGTCGGCTCCATCCCCGCCGTCTCCATCTACTTTGGCGTCTACCAGG
CCGTCAAGAAGGCCTTGCTGCAAGCCCTCCCTCCCACCCTGGGTTGGACC
CTGCTAGGCGTGGCGGCTTCGGCCGGAGTGGGCAACACTGTCGCCTCCGT
CTTTCGGGTACCGTACGAGGTGGTGAAACAGCGGCTGCAGGCGGGCATGT
ACAGCAGCACAGGGGAGGCTTTGCGCACCATGTACCGGACGGAGGGTGGG
CTGGGCGCTTTCTTTGGGAGCAGCGGCGTAGCTTCGCAGATCATGCGGGA
TGTGCCCTATGCCATCGTCACCCTGCTCACTTACGAATCCCTCCGACGGG
CTCGAGCAGCGGCCCGGCGAAAAGCCGGAGGGGGAAAGCTGTCCACGCCC
TTGGAGGACTCGATGATGGGAGCCTTTGCTGGGGGGGTGGGCTCCCTCGT
GTCGAATCCCATGGACGTGGTCAAGACGCGCGTTATGACCCAACCTGGCC
TCTACCCCACCGTATGGTCGGCCGTGCGGGGGCTATGGGCGGACGAGGGG
GCGGCCGCGTTCCTCAAGGGCACAGTGCCGCGGCTACTGCACAAGGTGCC
GGCCAATGCCATCTTTTTTGCCACGTACGAGATCTTTCGGGGGCTGTTGC
GCGTGCAGGGTTAG

Synonyms

Publications