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Properties
| Property Name | Value |
|---|
| TranscriptId | 621487 |
| Track | FilteredModels2 |
| ProteinId | 621401 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:5280..7811 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_12345 ID=mRNA_12345|Name=jgi.p|Nanoce1779_2|621401|organism=Nannochloropsis oceanica|type=mRNA|length=2434bp
ACGGAGTTGGCTGGTGATCTCGCTCGTTTTCCCTGTCGGAAATGTTTGCG
TAAAAGTGAGAGATTTGTAAACAAATGGTGCCGGTGGTGCGCAGCTTTAT
GCATAGACCAGGAACAGTATTGCTGCTAGTCACATGGGCAAAGCCCTTTC
ATACAAGTCAACGACCCTACTGCCTTTTTGCCTCGGCCGAATGAAGGTGA
AGAGCCTGTCACACGGTGCCTCGATGCGGAGCCTCGCTCTTGGCAACATT
GCTTTCGAGCCGTTTCAACACCTCACACCAATGCCCGAACAACAAGAGTG
AGCGCTGACAGCAGCACTCTTAAAGAGCTTTCCATCTTAAATATACTCAA
GCAACATACGTCAAAGAATTTTTTGGAGCTGGCAAAAAGCTACAAGCCTT
TCTCTCAGCAATTTTCGGTTTGTCTGGACAGAAGACGAGGGAGGAGGGAG
GCAAATTTCAGAGCCTCACGCTACTTATACGCCAGTGAAAAAACTTAACG
CAGGTCAAAGATCTGCATCAAATACCGCATCAACAGGAGCGAAATCTGCC
ATTGGGTCGCCTGTCCTCCCAGCCATTCTGCAGTCATCCTTTCCTCTTCG
CCAAGGAGCCCAGACTTGCCCCTCGTCGCTGTCCAAGTGCATGACCACAC
CCAGTACCACACGCGGAAACCATAACGATAAAGTTGAACAGAGTGATACG
AGCAGGTTCATGGCAATAAATGGCATAGATAGCTGTACCCGCTCTTCATT
TATATCGTCTTCTTCCCCCTACTCCCCAAGCACTCCTTTGTCTACACACA
ATCCATCCCTTACCCCAACTCCGACCTTGGGTCCCTGCTTTCTCCTGCTT
GCCTTCACCTACATGTCGCCATGGACTGTTATGGGCTCTCTTGTTTCTTA
TTTCAAAGAGCATCACGGCCCCGCATTTTTTGTTAGACTCAATTGTGCGT
ATTACCTCCCTGGCCTCCCACTCGCCCTCCTTCAACAACACTACGACTCG
ACCTTCGACTCACGCCTTGGCTCCCACGCCGCCTATCTTGCCCGTATCAT
TTCAGCCACCCTCATTTTGACGCTTACCCTGCTTTGCCTCCCCTCGGTCC
CGGCCTCCGACGCGCCAACTCTACTTGGGCTCACTAGCATTATGGGTGCC
TTCTCCTGGTTGGCGCATGGCACAGCTTCCACAGTGGTGAGCATATTTCC
CCCTGCAGCCCTGGTATGGTTACAATCAGGTTTTCGGATGCCAGAAATAT
ATACACTTGGTATGGTCTCCTTTCTCCAAATAAATGCTCACCCAAAAAAC
AGCGACTTGCGCCTTCTCTTCCATTTCACGGCAGCACTGGTGTTTAGCGG
AGCGGGAATATGGGTCTATCTCATGTCCCACCCTGCGACACAAGCGCTAC
TGCATTTGAAGGACCGAGGAGGACAGGTCAGCTTTCTTCCAGTCGCGGGG
CGGATTGAGGAGAAATGCGGAGAAAAGGTTCAGGAGGAGGACGCTTCCCT
TTTACATGCGTCCGCCATTGACAACCAAGTCGGACGTCACAGCAGCACCC
CATCTACAAGCAAAACTACCACCTTAAATATCAGTAGCAACAGCCGAGCG
TGCAGCCGCACCACTCATTTATCATCCAATGCCGTCATCCAGGCCCTGTC
AGAGGCGGAACGGGACTTTGTGGAAGCAACAATAGCGCCCTATTGCTGGG
TACTATCCATTACCATTGCCTCGTCCATCTTCCAATCGTCACTCCTGGCC
TATGTACAGAGCAGCCGCCCGCAGTCCAATTACTGTGTCTGCGAGCTGCT
CTATTTTGTGCGTCTCTTCGCCGACTTTCTTGGGCGTCCTCTCGCTTGCC
TTCTCCCCCACTATCTCCCTATATCGCAATCGTCACAACTTGTATCTGCT
ACGCTGGCCCGCATGTCCCTCTTGCTTCTATTTCTGGTCTACATCTTCTT
CCCCGCACACGTCCCGCAATCGGACGTGTTTGTGACCCTTCTGGTCGCCG
TCTTCGCCCTTTTGTCTGGCTACCTCGTCGTCCTCTCGTACGAGTACGCG
GCTAAGACGGTCGACCACTGCAAAGCCTATCAGGCGCATGCGGGCAGCGT
CATGAACCTCCACTTCCAATCCGCATGCTTTGTGGCCGTGATCTGCAGTC
TTTTTCTTGTTGACTTGGGCTTTTCCTGAGCACCGTAGCATGAAGAGAAC
TTGACGATGGTTTCTGTTGTCATTACCTGGATTGTAAAGTGCCGGGACGA
GAAAATAAAGTCCAAGGCATTGAGGTAGAAAAGGGACTCTCTTCGGACTA
CTTGTAGATTTCTGTGACTGAAACGTGTAACATCTACATTGGCTCATCTT
GGTATAATGGAGTAGAATGACGGCAGAGAAAGGACAACAAGAAGACTCCA
TCACTGAAAAGAAAGACGCCATTGCTTTTACTAC back to topprotein sequence of jgi.p|Nanoce1779_2|621401 >mRNA_12345-protein ID=mRNA_12345-protein|Name=jgi.p|Nanoce1779_2|621401|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MTTPSTTRGNHNDKVEQSDTSRFMAINGIDSCTRSSFISSSSPYSPSTPL
STHNPSLTPTPTLGPCFLLLAFTYMSPWTVMGSLVSYFKEHHGPAFFVRL
NCAYYLPGLPLALLQQHYDSTFDSRLGSHAAYLARIISATLILTLTLLCL
PSVPASDAPTLLGLTSIMGAFSWLAHGTASTVVSIFPPAALVWLQSGFRM
PEIYTLGMVSFLQINAHPKNSDLRLLFHFTAALVFSGAGIWVYLMSHPAT
QALLHLKDRGGQVSFLPVAGRIEEKCGEKVQEEDASLLHASAIDNQVGRH
SSTPSTSKTTTLNISSNSRACSRTTHLSSNAVIQALSEAERDFVEATIAP
YCWVLSITIASSIFQSSLLAYVQSSRPQSNYCVCELLYFVRLFADFLGRP
LACLLPHYLPISQSSQLVSATLARMSLLLLFLVYIFFPAHVPQSDVFVTL
LVAVFALLSGYLVVLSYEYAAKTVDHCKAYQAHAGSVMNLHFQSACFVAV
ICSLFLVDLGFS* back to topmRNA from alignment at scaffold_251:5280..7811- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_12345 ID=mRNA_12345|Name=jgi.p|Nanoce1779_2|621401|organism=Nannochloropsis oceanica|type=mRNA|length=2532bp|location=Sequence derived from alignment at scaffold_251:5280..7811- (Nannochloropsis oceanica)
ACGGAGTTGGCTGGTGATCTCGCTCGTTTTCCCTGTCGGAAATGTTTGCG
TAAAAGTGAGAGATTTGTAAACAAATGGTGCCGGTGGTGCGCAGCTTTAT
GCATAGACCAGGAACAGTATTGCTGCTAGTCACATGGGCAAAGCCCTTTC
ATACAAGTCAACGACCCTACTGCCTTTTTGCCTCGGCCGAATGAAGGTGA
AGAGCCTGTCACACGGTGCCTCGATGCGGAGCCTCGCTCTTGGCAACATT
GCTTTCGAGCCGTTTCAACACCTCACACCAATGCCCGAACAACAAGAGTG
AGCGCTGACAGCAGCACTCTTAAAGAGCTTTCCATCTTAAATATACTCAA
GCAACATACGTCAAAGAATTTTTTGGAGCTGGCAAAAAGCTACAAGCCTT
TCTCTCAGCAATTTTCGGTTTGTCTGGACAGAAGACGAGGGAGGAGGGAG
GCAAATTTCAGAGCCTCACGCTACTTATACGCCAGTGAAAAAACTTAACG
CAGGTCAAAGATCTGCATCAAATACCGCATCAACAGGAGCGAAATCTGCC
ATTGGGTCGCCTGTCCTCCCAGCCATTCTGCAGTCATCCTTTCCTCTTCG
CCAAGGAGCCCAGACTTGCCCCTCGTCGCTGTCCAAGTGCATGACCACAC
CCAGTACCACACGCGGAAACCATAACGATAAAGTTGAACAGAGTGATACG
AGCAGGTTCATGGCAATAAATGGCATAGATAGCTGTACCCGCTCTTCATT
TATATCGTCTTCTTCCCCCTACTCCCCAAGCACTCCTTTGTCTACACACA
ATCCATCCCTTACCCCAACTCCGACCTTGGGTCCCTGCTTTCTCCTGCTT
GCCTTCACCTACATGTCGCCATGGACTGTTATGGGCTCTCTTGTTTCTTA
TTTCAAAGAGCATCACGGCCCCGCATTTTTTGTTAGACTCAATTGTGCGT
ATTACCTCCCTGGCCTCCCACTCGCCCTCCTTCAACAACACTACGACTCG
ACCTTCGACTCACGCCTTGGCTCCCACGCCGCCTATCTTGCCCGTATCAT
TTCAGCCACCCTCATTTTGACGCTTACCCTGCTTTGCCTCCCCTCGGTCC
CGGCCTCCGACGCGCCAACTCTACTTGGGCTCACTAGCATTATGGGTGCC
TTCTCCTGGTTGGCGCATGGCACAGCTTCCACAGTGGTGAGCATATTTCC
CCCTGCAGCCCTGGTATGGTTACAATCAGGTTTTCGGATGCCAGAAATAT
ATACACTTGGTAAGCGTGGGGACGAACTGGGCGGAAAATAGAACAAAAAA
TCATTTCATCCCCTCCTTGACGCTTCCCATTTTCCTCAAAGGTATGGTCT
CCTTTCTCCAAATAAATGCTCACCCAAAAAACAGCGACTTGCGCCTTCTC
TTCCATTTCACGGCAGCACTGGTGTTTAGCGGAGCGGGAATATGGGTCTA
TCTCATGTCCCACCCTGCGACACAAGCGCTACTGCATTTGAAGGACCGAG
GAGGACAGGTCAGCTTTCTTCCAGTCGCGGGGCGGATTGAGGAGAAATGC
GGAGAAAAGGTTCAGGAGGAGGACGCTTCCCTTTTACATGCGTCCGCCAT
TGACAACCAAGTCGGACGTCACAGCAGCACCCCATCTACAAGCAAAACTA
CCACCTTAAATATCAGTAGCAACAGCCGAGCGTGCAGCCGCACCACTCAT
TTATCATCCAATGCCGTCATCCAGGCCCTGTCAGAGGCGGAACGGGACTT
TGTGGAAGCAACAATAGCGCCCTATTGCTGGGTACTATCCATTACCATTG
CCTCGTCCATCTTCCAATCGTCACTCCTGGCCTATGTACAGAGCAGCCGC
CCGCAGTCCAATTACTGTGTCTGCGAGCTGCTCTATTTTGTGCGTCTCTT
CGCCGACTTTCTTGGGCGTCCTCTCGCTTGCCTTCTCCCCCACTATCTCC
CTATATCGCAATCGTCACAACTTGTATCTGCTACGCTGGCCCGCATGTCC
CTCTTGCTTCTATTTCTGGTCTACATCTTCTTCCCCGCACACGTCCCGCA
ATCGGACGTGTTTGTGACCCTTCTGGTCGCCGTCTTCGCCCTTTTGTCTG
GCTACCTCGTCGTCCTCTCGTACGAGTACGCGGCTAAGACGGTCGACCAC
TGCAAAGCCTATCAGGCGCATGCGGGCAGCGTCATGAACCTCCACTTCCA
ATCCGCATGCTTTGTGGCCGTGATCTGCAGTCTTTTTCTTGTTGACTTGG
GCTTTTCCTGAGCACCGTAGCATGAAGAGAACTTGACGATGGTTTCTGTT
GTCATTACCTGGATTGTAAAGTGCCGGGACGAGAAAATAAAGTCCAAGGC
ATTGAGGTAGAAAAGGGACTCTCTTCGGACTACTTGCAGCTAGCCCGTTT
ATTAGATTTCTGTGACTGAAACGTGTAACATCTACATTGGCTCATCTTGG
TATAATGGAGTAGAATGACGGCAGAGAAAGGACAACAAGAAGACTCCATC
ACTGAAAAGAAAGACGCCATTGCTTTTACTAC back to topCoding sequence (CDS) from alignment at scaffold_251:5280..7811- >mRNA_12345 ID=mRNA_12345|Name=jgi.p|Nanoce1779_2|621401|organism=Nannochloropsis oceanica|type=CDS|length=3078bp|location=Sequence derived from alignment at scaffold_251:5280..7811- (Nannochloropsis oceanica)
GTATGGTCTCCTTTCTCCAAATAAATGCTCACCCAAAAAACAGCGACTTG
CGCCTTCTCTTCCATTTCACGGCAGCACTGGTGTTTAGCGGAGCGGGAAT
ATGGGTCTATCTCATGTCCCACCCTGCGACACAAGCGCTACTGCATTTGA
AGGACCGAGGAGGACAGGTCAGCTTTCTTCCAGTCGCGGGGCGGATTGAG
GAGAAATGCGGAGAAAAGGTTCAGGAGGAGGACGCTTCCCTTTTACATGC
GTCCGCCATTGACAACCAAGTCGGACGTCACAGCAGCACCCCATCTACAA
GCAAAACTACCACCTTAAATATCAGTAGCAACAGCCGAGCGTGCAGCCGC
ACCACTCATTTATCATCCAATGCCGTCATCCAGGCCCTGTCAGAGGCGGA
ACGGGACTTTGTGGAAGCAACAATAGCGCCCTATTGCTGGGTACTATCCA
TTACCATTGCCTCGTCCATCTTCCAATCGTCACTCCTGGCCTATGTACAG
AGCAGCCGCCCGCAGTCCAATTACTGTGTCTGCGAGCTGCTCTATTTTGT
GCGTCTCTTCGCCGACTTTCTTGGGCGTCCTCTCGCTTGCCTTCTCCCCC
ACTATCTCCCTATATCGCAATCGTCACAACTTGTATCTGCTACGCTGGCC
CGCATGTCCCTCTTGCTTCTATTTCTGGTCTACATCTTCTTCCCCGCACA
CGTCCCGCAATCGGACGTGTTTGTGACCCTTCTGGTCGCCGTCTTCGCCC
TTTTGTCTGGCTACCTCGTCGTCCTCTCGTACGAGTACGCGGCTAAGACG
GTCGACCACTGCAAAGCCTATCAGGCGCATGCGGGCAGCGTCATGAACCT
CCACTTCCAATCCGCATGCTTTGTGGCCGTGATCTGCAGTCTTTTTCTTG
TTGACTTGGGCTTTTCCTGAATGACCACACCCAGTACCACACGCGGAAAC
CATAACGATAAAGTTGAACAGAGTGATACGAGCAGGTTCATGGCAATAAA
TGGCATAGATAGCTGTACCCGCTCTTCATTTATATCGTCTTCTTCCCCCT
ACTCCCCAAGCACTCCTTTGTCTACACACAATCCATCCCTTACCCCAACT
CCGACCTTGGGTCCCTGCTTTCTCCTGCTTGCCTTCACCTACATGTCGCC
ATGGACTGTTATGGGCTCTCTTGTTTCTTATTTCAAAGAGCATCACGGCC
CCGCATTTTTTGTTAGACTCAATTGTGCGTATTACCTCCCTGGCCTCCCA
CTCGCCCTCCTTCAACAACACTACGACTCGACCTTCGACTCACGCCTTGG
CTCCCACGCCGCCTATCTTGCCCGTATCATTTCAGCCACCCTCATTTTGA
CGCTTACCCTGCTTTGCCTCCCCTCGGTCCCGGCCTCCGACGCGCCAACT
CTACTTGGGCTCACTAGCATTATGGGTGCCTTCTCCTGGTTGGCGCATGG
CACAGCTTCCACAGTGGTGAGCATATTTCCCCCTGCAGCCCTGGTATGGT
TACAATCAGGTTTTCGGATGCCAGAAATATATACACTTGGTATGGTCTCC
TTTCTCCAAATAAATGCTCACCCAAAAAACAGCGACTTGCGCCTTCTCTT
CCATTTCACGGCAGCACTGGTGTTTAGCGGAGCGGGAATATGGGTCTATC
TCATGTCCCACCCTGCGACACAAGCGCTACTGCATTTGAAGGACCGAGGA
GGACAGGTCAGCTTTCTTCCAGTCGCGGGGCGGATTGAGGAGAAATGCGG
AGAAAAGGTTCAGGAGGAGGACGCTTCCCTTTTACATGCGTCCGCCATTG
ACAACCAAGTCGGACGTCACAGCAGCACCCCATCTACAAGCAAAACTACC
ACCTTAAATATCAGTAGCAACAGCCGAGCGTGCAGCCGCACCACTCATTT
ATCATCCAATGCCGTCATCCAGGCCCTGTCAGAGGCGGAACGGGACTTTG
TGGAAGCAACAATAGCGCCCTATTGCTGGGTACTATCCATTACCATTGCC
TCGTCCATCTTCCAATCGTCACTCCTGGCCTATGTACAGAGCAGCCGCCC
GCAGTCCAATTACTGTGTCTGCGAGCTGCTCTATTTTGTGCGTCTCTTCG
CCGACTTTCTTGGGCGTCCTCTCGCTTGCCTTCTCCCCCACTATCTCCCT
ATATCGCAATCGTCACAACTTGTATCTGCTACGCTGGCCCGCATGTCCCT
CTTGCTTCTATTTCTGGTCTACATCTTCTTCCCCGCACACGTCCCGCAAT
CGGACGTGTTTGTGACCCTTCTGGTCGCCGTCTTCGCCCTTTTGTCTGGC
TACCTCGTCGTCCTCTCGTACGAGTACGCGGCTAAGACGGTCGACCACTG
CAAAGCCTATCAGGCGCATGCGGGCAGCGTCATGAACCTCCACTTCCAAT
CCGCATGCTTTGTGGCCGTGATCTGCAGTCTTTTTCTTGTTGACTTGGGC
TTTTCCTGAATGACCACACCCAGTACCACACGCGGAAACCATAACGATAA
AGTTGAACAGAGTGATACGAGCAGGTTCATGGCAATAAATGGCATAGATA
GCTGTACCCGCTCTTCATTTATATCGTCTTCTTCCCCCTACTCCCCAAGC
ACTCCTTTGTCTACACACAATCCATCCCTTACCCCAACTCCGACCTTGGG
TCCCTGCTTTCTCCTGCTTGCCTTCACCTACATGTCGCCATGGACTGTTA
TGGGCTCTCTTGTTTCTTATTTCAAAGAGCATCACGGCCCCGCATTTTTT
GTTAGACTCAATTGTGCGTATTACCTCCCTGGCCTCCCACTCGCCCTCCT
TCAACAACACTACGACTCGACCTTCGACTCACGCCTTGGCTCCCACGCCG
CCTATCTTGCCCGTATCATTTCAGCCACCCTCATTTTGACGCTTACCCTG
CTTTGCCTCCCCTCGGTCCCGGCCTCCGACGCGCCAACTCTACTTGGGCT
CACTAGCATTATGGGTGCCTTCTCCTGGTTGGCGCATGGCACAGCTTCCA
CAGTGGTGAGCATATTTCCCCCTGCAGCCCTGGTATGGTTACAATCAGGT
TTTCGGATGCCAGAAATATATACACTTG back to top
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