jgi.p|Nanoce1779_2|621394, mRNA_12344 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|621394
Unique NamemRNA_12344
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length909
Alignment locationscaffold_251:4331..5239 +

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Properties
Property NameValue
TranscriptId621480
TrackFilteredModels2
ProteinId621394
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:4331..5239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|621394gene_12344Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|621394mRNA_12344-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12344CDS_12344Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12344 ID=mRNA_12344|Name=jgi.p|Nanoce1779_2|621394|organism=Nannochloropsis oceanica|type=mRNA|length=909bp
AGATTTCGCGCGATGACGTCTCCATCATGCCACAAGTGAAGCAAGCAACG
CCACCGCAGACATGCTGTGTGTGGCTGAACTCGTGGTTGTCCAGCACTTC
TCATTAAGTGGGTATGCTGGACTTGCCTTTTCTCAACTACGCAACTTTTC
CAACAATCACAACACAGCCAGACAATTGATCCACGGGCCCCGACACCCTC
CGAAAGCAAAGCAAAATGAAGACCCCCAGCGTCTTGACTATCGTGTTAGT
ACTGCCCATGCTCGCCGCGGCATTCCTCGTCCGCCCTGTCCGACAGCAAC
GTATGCGCCTCTCCATGTCTTCTTTCCCTTCCTCTTCATGTGCCCTTGCC
TCCCGTCGCGCCGCCCTCTCTGGCAAGGTCACGGCCGCCGCCGCTTCCTT
CTTCCTCCTGTCCAATCCCACCCCTGCGTTGGCAGGCGTCAAACCCTCGA
CAGCGGAAGAGTCAATCAAAGCAGCCCGGGAAATCAAAGCTGGCTTGAAG
AGCCTGGCCGAGATGCAAGTCGCCGCCAGCAAGGCGGACTGGGAGACTGT
CAAAACGCTCCTGAGTAGGCCGGAGTTCAAGAACTTTGATAGCACGGCCA
CCACCTTGGTGCGCTCGGATCTGTTGACGGCCGAGGATAAGACGAGCCTG
GGAACTATCCGTCGCTTCGGATTGACAGCTGACTACATCATCATGATTGG
TGGCCTCGAGACGGAGTTACGAGTCGGGGGCGTCCTTCCCCCGTTGAAGG
ACGCGATAGAGGATTTGGAGGACGAGGAGGGAAACGGAAAAAGTGTAAAC
AGGGGAGAGGCGGTAAAGTTTGTCAAGCTAGCAAGGGGATCTTTGCAAGA
AATCGACCGTATCTCCAGCTCGGTACTGCCCGAGGGAGAGCAATGAGGAG
ATAAAAAGT
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protein sequence of jgi.p|Nanoce1779_2|621394

>mRNA_12344-protein ID=mRNA_12344-protein|Name=jgi.p|Nanoce1779_2|621394|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MKTPSVLTIVLVLPMLAAAFLVRPVRQQRMRLSMSSFPSSSCALASRRAA
LSGKVTAAAASFFLLSNPTPALAGVKPSTAEESIKAAREIKAGLKSLAEM
QVAASKADWETVKTLLSRPEFKNFDSTATTLVRSDLLTAEDKTSLGTIRR
FGLTADYIIMIGGLETELRVGGVLPPLKDAIEDLEDEEGNGKSVNRGEAV
KFVKLARGSLQEIDRISSSVLPEGEQ*
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mRNA from alignment at scaffold_251:4331..5239+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12344 ID=mRNA_12344|Name=jgi.p|Nanoce1779_2|621394|organism=Nannochloropsis oceanica|type=mRNA|length=909bp|location=Sequence derived from alignment at scaffold_251:4331..5239+ (Nannochloropsis oceanica)
AGATTTCGCGCGATGACGTCTCCATCATGCCACAAGTGAAGCAAGCAACG
CCACCGCAGACATGCTGTGTGTGGCTGAACTCGTGGTTGTCCAGCACTTC
TCATTAAGTGGGTATGCTGGACTTGCCTTTTCTCAACTACGCAACTTTTC
CAACAATCACAACACAGCCAGACAATTGATCCACGGGCCCCGACACCCTC
CGAAAGCAAAGCAAAATGAAGACCCCCAGCGTCTTGACTATCGTGTTAGT
ACTGCCCATGCTCGCCGCGGCATTCCTCGTCCGCCCTGTCCGACAGCAAC
GTATGCGCCTCTCCATGTCTTCTTTCCCTTCCTCTTCATGTGCCCTTGCC
TCCCGTCGCGCCGCCCTCTCTGGCAAGGTCACGGCCGCCGCCGCTTCCTT
CTTCCTCCTGTCCAATCCCACCCCTGCGTTGGCAGGCGTCAAACCCTCGA
CAGCGGAAGAGTCAATCAAAGCAGCCCGGGAAATCAAAGCTGGCTTGAAG
AGCCTGGCCGAGATGCAAGTCGCCGCCAGCAAGGCGGACTGGGAGACTGT
CAAAACGCTCCTGAGTAGGCCGGAGTTCAAGAACTTTGATAGCACGGCCA
CCACCTTGGTGCGCTCGGATCTGTTGACGGCCGAGGATAAGACGAGCCTG
GGAACTATCCGTCGCTTCGGATTGACAGCTGACTACATCATCATGATTGG
TGGCCTCGAGACGGAGTTACGAGTCGGGGGCGTCCTTCCCCCGTTGAAGG
ACGCGATAGAGGATTTGGAGGACGAGGAGGGAAACGGAAAAAGTGTAAAC
AGGGGAGAGGCGGTAAAGTTTGTCAAGCTAGCAAGGGGATCTTTGCAAGA
AATCGACCGTATCTCCAGCTCGGTACTGCCCGAGGGAGAGCAATGAGGAG
ATAAAAAGT
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Coding sequence (CDS) from alignment at scaffold_251:4331..5239+

>mRNA_12344 ID=mRNA_12344|Name=jgi.p|Nanoce1779_2|621394|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_251:4331..5239+ (Nannochloropsis oceanica)
ATGAAGACCCCCAGCGTCTTGACTATCGTGTTAGTACTGCCCATGCTCGC
CGCGGCATTCCTCGTCCGCCCTGTCCGACAGCAACGTATGCGCCTCTCCA
TGTCTTCTTTCCCTTCCTCTTCATGTGCCCTTGCCTCCCGTCGCGCCGCC
CTCTCTGGCAAGGTCACGGCCGCCGCCGCTTCCTTCTTCCTCCTGTCCAA
TCCCACCCCTGCGTTGGCAGGCGTCAAACCCTCGACAGCGGAAGAGTCAA
TCAAAGCAGCCCGGGAAATCAAAGCTGGCTTGAAGAGCCTGGCCGAGATG
CAAGTCGCCGCCAGCAAGGCGGACTGGGAGACTGTCAAAACGCTCCTGAG
TAGGCCGGAGTTCAAGAACTTTGATAGCACGGCCACCACCTTGGTGCGCT
CGGATCTGTTGACGGCCGAGGATAAGACGAGCCTGGGAACTATCCGTCGC
TTCGGATTGACAGCTGACTACATCATCATGATTGGTGGCCTCGAGACGGA
GTTACGAGTCGGGGGCGTCCTTCCCCCGTTGAAGGACGCGATAGAGGATT
TGGAGGACGAGGAGGGAAACGGAAAAAGTGTAAACAGGGGAGAGGCGGTA
AAGTTTGTCAAGCTAGCAAGGGGATCTTTGCAAGAAATCGACCGTATCTC
CAGCTCGGTACTGCCCGAGGGAGAGCAATGA
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Synonyms
Publications