jgi.p|Nanoce1779_2|204823, mRNA_12347 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|204823
Unique Name	mRNA_12347
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2184
Alignment location	scaffold_251:10706..12889 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	204909
Track	FilteredModels2
ProteinId	204823

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_251	supercontig	scaffold_251:10706..12889 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|204823	gene_12347	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|204823	mRNA_12347-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12347	CDS_12347	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_251:10706..12889+
coding sequence from alignment at scaffold_251:10706..12889+

mRNA sequence

>mRNA_12347 ID=mRNA_12347|Name=jgi.p|Nanoce1779_2|204823|organism=Nannochloropsis oceanica|type=mRNA|length=2184bp
GCATTCTTGAGGCGCTTCAAGAAGAAGGTGTGCTGTAAATAAAATCTATC
AAAGTAAACAAGTGACGAATTCGCGGATGGGCTTCATTTATTGCATGTTT
TCTTCCTATTTGAGGGAATTCACTGTCTCAGGGGTAGAGGAAAGGATAAG
ATTTAAGGGGGAAGGAAACGTGTCTTTAAAGCTCTTTTCCTCTGTCTTTT
TTTCCAGTCCCTGCCTTTTAAAGCAACCATGTGCTCACCCACATGAGAGA
GGAAAGTTGGGGGGTATGCTCTCCAATGGAGTTCGAATTCAATTTATTTT
CCAAAGACTCCGTAATAACTTCGGTCTTCTAGACTATCAAGTACGCATTT
GCCTAGGAGGTGGACTTCCTACGGTGAAAGGCATGACGTTTGATCAAGTC
AGTGTGTTGTCAAGCTCGTAAGCCCCTCGTTTTCACGTTCCCATCTCTCG
TCCCCTTCAACAAATTGATGTGAGATGATCCATTAATTCATCATGTCCTA
CCCTGGCAACTCACCAGCTTACTCTACCACTATGCATGCCCCATGCGGCC
AGTAGACAACGCTATCCCACAACATGGGCGTTGGATTGGAGTCATCGACT
TCATCCCGCCGACCAGATGAGAAAGCAAACGCTCCACATCAAGATTCAGC
AGACGCTGCGGACGTCTGCCACGACCGCCTCCGCAGCCAGAGCGTTCACA
GCTCGGGCAGCTCTGGCAGTTGCGATGGCAGTAGTCCTCCACGTCGGAGC
AGCCTAGGCTCGACGTCGTCGAAACAGGAGGCGAGGGAGAGAGAAGGCAA
GGAAAAAGGGCGGGGCCAAGCAAATAGTCTCCTCGGCGTACAAGGCCGCT
TGACTGGCGAGCTCATCAAGCCTCCCGACGCGCACCGCGAATCTCTCTTC
GCGCCCTTTTACGCTTCGGATGCAGCAGGCCCACCTGCCAAGAAGCCGCC
CTCCTATTTGGCCTCTGCCGACGGTGGGGCGAAGGAGGAAACGTGGTGGA
TGAAGGATGGAGGAGGGAGCGGAGGGGATGAGGAAGGAAACATGGACGAG
AGTTTGACAGCACGCTTGCGGCGGCACACGCGGGAAGTGGCGAATTTAAA
GACTAAAGAGGAGAGGAAGGTGCCGCAGAGGGAAAGCAATGGCGGAGATG
GAGTGGACAGAGGGAGAAGAGGGGGAGTCGACGAGATCCAGGACGAAGGG
CGGGAGAAGGGAGGAAGAGGAGAACAGAACGACAAGGGGGAAAGGGATAC
CGGATTGAGAAGAGCTGAACAGGGAGCGGCAATGCCCTTGCTGGTGCAAC
ACCGTCAGCAAGAGCCTGTGACCCATTCCCACCCTGAACCCTCCCCCTCT
ACCCTCTCTTTAGCTCCCTCCCTCTCCATCCCCTCGTCGAATCTCCCAAA
GTATACCATCACAGTGGTCCCTTGGCAAAGGGCTTCATCGATCTCTTATC
CCTCATCGACTCGTCATGCCTCATCTGGCTGCCTGGGGCTCTTCCGCTGC
ACGAGCACTTGGAGCCATGCCTTCCCCTCGACCTCCTTCCCTCCCTCTTC
CTTCATAACCTATAAAATCACACTTACCCTCGGTGACTCTTTCTCTTTTC
CGCTGACATCCTGCTTTTCGTCTTCCCCCTCATTCGTTACCCCTCCCTCG
TCCTCCCCGACCTTCGTCCAGCCCTCCAGCGCCATCCCGGTTCCCCGCAC
TCACACCACTATAAAGCGCTACTCGGAGCTCCTGCGTTACCACCGTCTTT
GGTGCGAGCAGAGACTTGTGCCACGATCCCTCAAGGCCAAATTTCCGCCC
AAAACTCTGCTGCCGCCGACGATGACGATGGGCACAGTCAGGACGGTGGG
GCCCGTTGGGCGAATGGACGGAGATGGTGAGGCAGGTGAGGCATCCAGCA
GCACCCTGAAGAGGGCCTACAAGCTGCAGCTCTATTTTCAAGCCTTGCTA
GACTTGAAAGAGAAAGGGACAGAGGAAGGAAGGATGCAGGGAGGCAATTT
GGTGGAATCGCCTTTGTTCTGGGCTATGTTTGCTGCCAGCGGGCCAGAAT
AGTTGGGGATATGATGATTTGCGGGGCAGATCACCAGGAAAAAGAGAAAG
GGAATGTAGCATAACAAAGTGATGGAGATCATATTTATTTGTGCCACACC
TGGACGCAGCAGAGGTAAATGAAATGATTCAATC

protein sequence of jgi.p|Nanoce1779_2|204823

>mRNA_12347-protein ID=mRNA_12347-protein|Name=jgi.p|Nanoce1779_2|204823|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MGVGLESSTSSRRPDEKANAPHQDSADAADVCHDRLRSQSVHSSGSSGSC
DGSSPPRRSSLGSTSSKQEAREREGKEKGRGQANSLLGVQGRLTGELIKP
PDAHRESLFAPFYASDAAGPPAKKPPSYLASADGGAKEETWWMKDGGGSG
GDEEGNMDESLTARLRRHTREVANLKTKEERKVPQRESNGGDGVDRGRRG
GVDEIQDEGREKGGRGEQNDKGERDTGLRRAEQGAAMPLLVQHRQQEPVT
HSHPEPSPSTLSLAPSLSIPSSNLPKYTITVVPWQRASSISYPSSTRHAS
SGCLGLFRCTSTWSHAFPSTSFPPSSFITYKITLTLGDSFSFPLTSCFSS
SPSFVTPPSSSPTFVQPSSAIPVPRTHTTIKRYSELLRYHRLWCEQRLVP
RSLKAKFPPKTLLPPTMTMGTVRTVGPVGRMDGDGEAGEASSSTLKRAYK
LQLYFQALLDLKEKGTEEGRMQGGNLVESPLFWAMFAASGPE*

mRNA from alignment at scaffold_251:10706..12889+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12347 ID=mRNA_12347|Name=jgi.p|Nanoce1779_2|204823|organism=Nannochloropsis oceanica|type=mRNA|length=2184bp|location=Sequence derived from alignment at scaffold_251:10706..12889+ (Nannochloropsis oceanica)
GCATTCTTGAGGCGCTTCAAGAAGAAGGTGTGCTGTAAATAAAATCTATC
AAAGTAAACAAGTGACGAATTCGCGGATGGGCTTCATTTATTGCATGTTT
TCTTCCTATTTGAGGGAATTCACTGTCTCAGGGGTAGAGGAAAGGATAAG
ATTTAAGGGGGAAGGAAACGTGTCTTTAAAGCTCTTTTCCTCTGTCTTTT
TTTCCAGTCCCTGCCTTTTAAAGCAACCATGTGCTCACCCACATGAGAGA
GGAAAGTTGGGGGGTATGCTCTCCAATGGAGTTCGAATTCAATTTATTTT
CCAAAGACTCCGTAATAACTTCGGTCTTCTAGACTATCAAGTACGCATTT
GCCTAGGAGGTGGACTTCCTACGGTGAAAGGCATGACGTTTGATCAAGTC
AGTGTGTTGTCAAGCTCGTAAGCCCCTCGTTTTCACGTTCCCATCTCTCG
TCCCCTTCAACAAATTGATGTGAGATGATCCATTAATTCATCATGTCCTA
CCCTGGCAACTCACCAGCTTACTCTACCACTATGCATGCCCCATGCGGCC
AGTAGACAACGCTATCCCACAACATGGGCGTTGGATTGGAGTCATCGACT
TCATCCCGCCGACCAGATGAGAAAGCAAACGCTCCACATCAAGATTCAGC
AGACGCTGCGGACGTCTGCCACGACCGCCTCCGCAGCCAGAGCGTTCACA
GCTCGGGCAGCTCTGGCAGTTGCGATGGCAGTAGTCCTCCACGTCGGAGC
AGCCTAGGCTCGACGTCGTCGAAACAGGAGGCGAGGGAGAGAGAAGGCAA
GGAAAAAGGGCGGGGCCAAGCAAATAGTCTCCTCGGCGTACAAGGCCGCT
TGACTGGCGAGCTCATCAAGCCTCCCGACGCGCACCGCGAATCTCTCTTC
GCGCCCTTTTACGCTTCGGATGCAGCAGGCCCACCTGCCAAGAAGCCGCC
CTCCTATTTGGCCTCTGCCGACGGTGGGGCGAAGGAGGAAACGTGGTGGA
TGAAGGATGGAGGAGGGAGCGGAGGGGATGAGGAAGGAAACATGGACGAG
AGTTTGACAGCACGCTTGCGGCGGCACACGCGGGAAGTGGCGAATTTAAA
GACTAAAGAGGAGAGGAAGGTGCCGCAGAGGGAAAGCAATGGCGGAGATG
GAGTGGACAGAGGGAGAAGAGGGGGAGTCGACGAGATCCAGGACGAAGGG
CGGGAGAAGGGAGGAAGAGGAGAACAGAACGACAAGGGGGAAAGGGATAC
CGGATTGAGAAGAGCTGAACAGGGAGCGGCAATGCCCTTGCTGGTGCAAC
ACCGTCAGCAAGAGCCTGTGACCCATTCCCACCCTGAACCCTCCCCCTCT
ACCCTCTCTTTAGCTCCCTCCCTCTCCATCCCCTCGTCGAATCTCCCAAA
GTATACCATCACAGTGGTCCCTTGGCAAAGGGCTTCATCGATCTCTTATC
CCTCATCGACTCGTCATGCCTCATCTGGCTGCCTGGGGCTCTTCCGCTGC
ACGAGCACTTGGAGCCATGCCTTCCCCTCGACCTCCTTCCCTCCCTCTTC
CTTCATAACCTATAAAATCACACTTACCCTCGGTGACTCTTTCTCTTTTC
CGCTGACATCCTGCTTTTCGTCTTCCCCCTCATTCGTTACCCCTCCCTCG
TCCTCCCCGACCTTCGTCCAGCCCTCCAGCGCCATCCCGGTTCCCCGCAC
TCACACCACTATAAAGCGCTACTCGGAGCTCCTGCGTTACCACCGTCTTT
GGTGCGAGCAGAGACTTGTGCCACGATCCCTCAAGGCCAAATTTCCGCCC
AAAACTCTGCTGCCGCCGACGATGACGATGGGCACAGTCAGGACGGTGGG
GCCCGTTGGGCGAATGGACGGAGATGGTGAGGCAGGTGAGGCATCCAGCA
GCACCCTGAAGAGGGCCTACAAGCTGCAGCTCTATTTTCAAGCCTTGCTA
GACTTGAAAGAGAAAGGGACAGAGGAAGGAAGGATGCAGGGAGGCAATTT
GGTGGAATCGCCTTTGTTCTGGGCTATGTTTGCTGCCAGCGGGCCAGAAT
AGTTGGGGATATGATGATTTGCGGGGCAGATCACCAGGAAAAAGAGAAAG
GGAATGTAGCATAACAAAGTGATGGAGATCATATTTATTTGTGCCACACC
TGGACGCAGCAGAGGTAAATGAAATGATTCAATC

Coding sequence (CDS) from alignment at scaffold_251:10706..12889+

>mRNA_12347 ID=mRNA_12347|Name=jgi.p|Nanoce1779_2|204823|organism=Nannochloropsis oceanica|type=CDS|length=1479bp|location=Sequence derived from alignment at scaffold_251:10706..12889+ (Nannochloropsis oceanica)
ATGGGCGTTGGATTGGAGTCATCGACTTCATCCCGCCGACCAGATGAGAA
AGCAAACGCTCCACATCAAGATTCAGCAGACGCTGCGGACGTCTGCCACG
ACCGCCTCCGCAGCCAGAGCGTTCACAGCTCGGGCAGCTCTGGCAGTTGC
GATGGCAGTAGTCCTCCACGTCGGAGCAGCCTAGGCTCGACGTCGTCGAA
ACAGGAGGCGAGGGAGAGAGAAGGCAAGGAAAAAGGGCGGGGCCAAGCAA
ATAGTCTCCTCGGCGTACAAGGCCGCTTGACTGGCGAGCTCATCAAGCCT
CCCGACGCGCACCGCGAATCTCTCTTCGCGCCCTTTTACGCTTCGGATGC
AGCAGGCCCACCTGCCAAGAAGCCGCCCTCCTATTTGGCCTCTGCCGACG
GTGGGGCGAAGGAGGAAACGTGGTGGATGAAGGATGGAGGAGGGAGCGGA
GGGGATGAGGAAGGAAACATGGACGAGAGTTTGACAGCACGCTTGCGGCG
GCACACGCGGGAAGTGGCGAATTTAAAGACTAAAGAGGAGAGGAAGGTGC
CGCAGAGGGAAAGCAATGGCGGAGATGGAGTGGACAGAGGGAGAAGAGGG
GGAGTCGACGAGATCCAGGACGAAGGGCGGGAGAAGGGAGGAAGAGGAGA
ACAGAACGACAAGGGGGAAAGGGATACCGGATTGAGAAGAGCTGAACAGG
GAGCGGCAATGCCCTTGCTGGTGCAACACCGTCAGCAAGAGCCTGTGACC
CATTCCCACCCTGAACCCTCCCCCTCTACCCTCTCTTTAGCTCCCTCCCT
CTCCATCCCCTCGTCGAATCTCCCAAAGTATACCATCACAGTGGTCCCTT
GGCAAAGGGCTTCATCGATCTCTTATCCCTCATCGACTCGTCATGCCTCA
TCTGGCTGCCTGGGGCTCTTCCGCTGCACGAGCACTTGGAGCCATGCCTT
CCCCTCGACCTCCTTCCCTCCCTCTTCCTTCATAACCTATAAAATCACAC
TTACCCTCGGTGACTCTTTCTCTTTTCCGCTGACATCCTGCTTTTCGTCT
TCCCCCTCATTCGTTACCCCTCCCTCGTCCTCCCCGACCTTCGTCCAGCC
CTCCAGCGCCATCCCGGTTCCCCGCACTCACACCACTATAAAGCGCTACT
CGGAGCTCCTGCGTTACCACCGTCTTTGGTGCGAGCAGAGACTTGTGCCA
CGATCCCTCAAGGCCAAATTTCCGCCCAAAACTCTGCTGCCGCCGACGAT
GACGATGGGCACAGTCAGGACGGTGGGGCCCGTTGGGCGAATGGACGGAG
ATGGTGAGGCAGGTGAGGCATCCAGCAGCACCCTGAAGAGGGCCTACAAG
CTGCAGCTCTATTTTCAAGCCTTGCTAGACTTGAAAGAGAAAGGGACAGA
GGAAGGAAGGATGCAGGGAGGCAATTTGGTGGAATCGCCTTTGTTCTGGG
CTATGTTTGCTGCCAGCGGGCCAGAATAG

Synonyms

Publications