jgi.p|Nanoce1779_2|621403, mRNA_12346 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|621403
Unique NamemRNA_12346
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1204
Alignment locationscaffold_251:9595..10798 +

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Properties
Property NameValue
TranscriptId621489
TrackFilteredModels2
ProteinId621403
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:9595..10798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|621403gene_12346Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|621403mRNA_12346-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12346CDS_12346Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12346 ID=mRNA_12346|Name=jgi.p|Nanoce1779_2|621403|organism=Nannochloropsis oceanica|type=mRNA|length=1204bp
AGCCGTCACTTCCTTGGGCTGATGAGAGCCAGGCTGGAGGCGTGCGAAGC
GGCAGCAGGAGGCGAGGAGGAGGAGGAGGAGGGAGGCAGGTGGGGTGTTG
GTCGGAGCGAGGTGACGGCGGCGACGCCTGTGGTGCTGGCGCGCATGGTG
AGTTTCGCGGAGCAGTTGGTAGTGCAGGTGCAGGAGATGGGCCAGCTGTA
CGAGCTGCAGCAGCTGGACAAGATCAAGGCCATCTGTGCCGTGGCGGAGG
AGGACATGAGCAAGCTCTCGGAGTACGTCTCGAGCCGCAAGGACGAGCTC
GACGAGGACTTCGTGCGGTACCTGCAGTACCTGCTCGAGGCGGAAAAGGT
GCGGCTGAAGGGGGCGGGTGTGGCGCGGCCGGAGCGGGAGCCGTCCAACT
GGCTGATGATCCTGGAGATTGTCAAGAAGGGCGTCTACCACGAGATGGGC
AAGGCGGTGCGCGACGACGTGAGCATGGTCCACTTCATCACGCGCTTCGA
GGAGGCCGACGAGCGCGAGCATCTGGCGCGTGCCCATATTGCACGCCTGG
CGCCCTCCCAGGTCATCCCTTTCAAGCGGGTGGTGACGCAGATGGTCGAC
CACTTCGAGAGCCGCGTGAACGACCTGACCGAGGCCGAGCTGGCGCTGGC
GGGTAAGGTGCTCGAGGTGGAGGATATCTTGGAGGAAGTGCACCCGGACT
CGTCGCTTCTAGCACTTCTGCAGACCAAGGAGGGCGGGTTGGGGCTGGAG
GCCTACAAAATGGGTGCTGAGACGCTGTTGCACGACCCCCGCGAGTGGGA
CGACAGCGCGTTGGCTGGCCGGGAGGACGAGCTCTTTTCGCCTGAGTACT
TGGCTGCCAAGTACGACCGCATCCTCAAACACTACGGATTTACCGCTTCC
GGTCAGGAAGGCCGGGGCATGGGGAACGTCGGGGAGGATGAAGAGAAGGA
AGGGAAGGAGGATATCGAGCAGGAAAGGATACTTGGCGAGGGATCGGCAG
GAGCAATTGGCCGGGGATCTGCCGGGACGTTGCCCGCTAATCTTGCCAAA
ACTGTAGCTGGGAAGGGCGGGGAGAAGGAAGAGGAGGTGGAGGAGACGGG
GGGTTCCGGGAGCATTCTTGAGGCGCTTCAAGAAGAAGGTGTGCTGTAAA
TAAAATCTATCAAAGTAAACAAGTGACGAATTCGCGGATGGGCTTCATTT
ATTG
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protein sequence of jgi.p|Nanoce1779_2|621403

>mRNA_12346-protein ID=mRNA_12346-protein|Name=jgi.p|Nanoce1779_2|621403|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MRARLEACEAAAGGEEEEEEGGRWGVGRSEVTAATPVVLARMVSFAEQLV
VQVQEMGQLYELQQLDKIKAICAVAEEDMSKLSEYVSSRKDELDEDFVRY
LQYLLEAEKVRLKGAGVARPEREPSNWLMILEIVKKGVYHEMGKAVRDDV
SMVHFITRFEEADEREHLARAHIARLAPSQVIPFKRVVTQMVDHFESRVN
DLTEAELALAGKVLEVEDILEEVHPDSSLLALLQTKEGGLGLEAYKMGAE
TLLHDPREWDDSALAGREDELFSPEYLAAKYDRILKHYGFTASGQEGRGM
GNVGEDEEKEGKEDIEQERILGEGSAGAIGRGSAGTLPANLAKTVAGKGG
EKEEEVEETGGSGSILEALQEEGVL*
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mRNA from alignment at scaffold_251:9595..10798+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12346 ID=mRNA_12346|Name=jgi.p|Nanoce1779_2|621403|organism=Nannochloropsis oceanica|type=mRNA|length=1204bp|location=Sequence derived from alignment at scaffold_251:9595..10798+ (Nannochloropsis oceanica)
AGCCGTCACTTCCTTGGGCTGATGAGAGCCAGGCTGGAGGCGTGCGAAGC
GGCAGCAGGAGGCGAGGAGGAGGAGGAGGAGGGAGGCAGGTGGGGTGTTG
GTCGGAGCGAGGTGACGGCGGCGACGCCTGTGGTGCTGGCGCGCATGGTG
AGTTTCGCGGAGCAGTTGGTAGTGCAGGTGCAGGAGATGGGCCAGCTGTA
CGAGCTGCAGCAGCTGGACAAGATCAAGGCCATCTGTGCCGTGGCGGAGG
AGGACATGAGCAAGCTCTCGGAGTACGTCTCGAGCCGCAAGGACGAGCTC
GACGAGGACTTCGTGCGGTACCTGCAGTACCTGCTCGAGGCGGAAAAGGT
GCGGCTGAAGGGGGCGGGTGTGGCGCGGCCGGAGCGGGAGCCGTCCAACT
GGCTGATGATCCTGGAGATTGTCAAGAAGGGCGTCTACCACGAGATGGGC
AAGGCGGTGCGCGACGACGTGAGCATGGTCCACTTCATCACGCGCTTCGA
GGAGGCCGACGAGCGCGAGCATCTGGCGCGTGCCCATATTGCACGCCTGG
CGCCCTCCCAGGTCATCCCTTTCAAGCGGGTGGTGACGCAGATGGTCGAC
CACTTCGAGAGCCGCGTGAACGACCTGACCGAGGCCGAGCTGGCGCTGGC
GGGTAAGGTGCTCGAGGTGGAGGATATCTTGGAGGAAGTGCACCCGGACT
CGTCGCTTCTAGCACTTCTGCAGACCAAGGAGGGCGGGTTGGGGCTGGAG
GCCTACAAAATGGGTGCTGAGACGCTGTTGCACGACCCCCGCGAGTGGGA
CGACAGCGCGTTGGCTGGCCGGGAGGACGAGCTCTTTTCGCCTGAGTACT
TGGCTGCCAAGTACGACCGCATCCTCAAACACTACGGATTTACCGCTTCC
GGTCAGGAAGGCCGGGGCATGGGGAACGTCGGGGAGGATGAAGAGAAGGA
AGGGAAGGAGGATATCGAGCAGGAAAGGATACTTGGCGAGGGATCGGCAG
GAGCAATTGGCCGGGGATCTGCCGGGACGTTGCCCGCTAATCTTGCCAAA
ACTGTAGCTGGGAAGGGCGGGGAGAAGGAAGAGGAGGTGGAGGAGACGGG
GGGTTCCGGGAGCATTCTTGAGGCGCTTCAAGAAGAAGGTGTGCTGTAAA
TAAAATCTATCAAAGTAAACAAGTGACGAATTCGCGGATGGGCTTCATTT
ATTG
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Coding sequence (CDS) from alignment at scaffold_251:9595..10798+

>mRNA_12346 ID=mRNA_12346|Name=jgi.p|Nanoce1779_2|621403|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at scaffold_251:9595..10798+ (Nannochloropsis oceanica)
ATGAGAGCCAGGCTGGAGGCGTGCGAAGCGGCAGCAGGAGGCGAGGAGGA
GGAGGAGGAGGGAGGCAGGTGGGGTGTTGGTCGGAGCGAGGTGACGGCGG
CGACGCCTGTGGTGCTGGCGCGCATGGTGAGTTTCGCGGAGCAGTTGGTA
GTGCAGGTGCAGGAGATGGGCCAGCTGTACGAGCTGCAGCAGCTGGACAA
GATCAAGGCCATCTGTGCCGTGGCGGAGGAGGACATGAGCAAGCTCTCGG
AGTACGTCTCGAGCCGCAAGGACGAGCTCGACGAGGACTTCGTGCGGTAC
CTGCAGTACCTGCTCGAGGCGGAAAAGGTGCGGCTGAAGGGGGCGGGTGT
GGCGCGGCCGGAGCGGGAGCCGTCCAACTGGCTGATGATCCTGGAGATTG
TCAAGAAGGGCGTCTACCACGAGATGGGCAAGGCGGTGCGCGACGACGTG
AGCATGGTCCACTTCATCACGCGCTTCGAGGAGGCCGACGAGCGCGAGCA
TCTGGCGCGTGCCCATATTGCACGCCTGGCGCCCTCCCAGGTCATCCCTT
TCAAGCGGGTGGTGACGCAGATGGTCGACCACTTCGAGAGCCGCGTGAAC
GACCTGACCGAGGCCGAGCTGGCGCTGGCGGGTAAGGTGCTCGAGGTGGA
GGATATCTTGGAGGAAGTGCACCCGGACTCGTCGCTTCTAGCACTTCTGC
AGACCAAGGAGGGCGGGTTGGGGCTGGAGGCCTACAAAATGGGTGCTGAG
ACGCTGTTGCACGACCCCCGCGAGTGGGACGACAGCGCGTTGGCTGGCCG
GGAGGACGAGCTCTTTTCGCCTGAGTACTTGGCTGCCAAGTACGACCGCA
TCCTCAAACACTACGGATTTACCGCTTCCGGTCAGGAAGGCCGGGGCATG
GGGAACGTCGGGGAGGATGAAGAGAAGGAAGGGAAGGAGGATATCGAGCA
GGAAAGGATACTTGGCGAGGGATCGGCAGGAGCAATTGGCCGGGGATCTG
CCGGGACGTTGCCCGCTAATCTTGCCAAAACTGTAGCTGGGAAGGGCGGG
GAGAAGGAAGAGGAGGTGGAGGAGACGGGGGGTTCCGGGAGCATTCTTGA
GGCGCTTCAAGAAGAAGGTGTGCTGTAA
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Synonyms
Publications