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Properties
| Property Name | Value |
|---|
| TranscriptId | 621502 |
| Track | FilteredModels2 |
| ProteinId | 621416 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:14631..16336 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_12349 ID=mRNA_12349|Name=jgi.p|Nanoce1779_2|621416|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp
ACAGCCAACTAGCTTCCCCCGTAAAACACCATGCATCGCGCCCTTTCTCT
GCTTGCCCTCGGCATCACCCTCGCCCTGACAGCGGCTCAGCCGATGTTGA
CCCTCACCTCCATTAAGGCAGTCGACTCGACAAGCAACAATCAGGACAAA
TGGAGCATGAAGGGCTTCCTCAACGATCCTGATGCCGATTTAATCTCGAC
CATCGCCGATGAGGGCTTGAGCGCGGACCTTGTAAACAGTGACGATCTTC
TTGTGAGTGATGTGACATTTGCCGCGGCTGCTTGTAGAGACCTCAGCAAC
GGCAGGGGAGTCCTTTGCAAGGATGCGGGCGCCCGTATCTCGTTCAAGAG
GACGAAGAGGGTACCGCATGAGGCCAAGGTGAAGGCGATGAAGAACCACA
ACAAGACGGACAGCGCTTCTTCCTACTACAGTGTGTCGGGTGTTTTCCGC
CGTCAGCAATTCGAGAACACTATCTCTAACTCGGCGAATCTATCAGGAAG
TCTTGGCAACAACCAGGCATTTACTGACGAGCCCACACTCTCTAACTGCA
GGGAGAAGGGGGGTGCCAGGACCACCAAGCTCTTCTGCCAGTAAATGCCA
TCGCATTGAGGTCGGGCCTGCACTCGGCGCTCGACTCACCGGCAAGAGAC
CCTCCACGTCCTGCCTCTTGTATATCTATGTGTGACTGTGTCTTGTATGC
CCGCTTTCAGGTTGGAAGCCCTCCAGTTTCCGTTCCTGACGCGTCGGTTT
GTCCATGTGCGTAAACAGTGTTCTTGTTTGATGTGTTGTGCATGTGTTGT
GCTGTGTATGTGTCCCATCTCCTCTCTCGAGCCCTTCTCGTGTTGTATGC
TTGTATTCCCCGGACGGCCCCAGAGAGCCAAGTCTCGGAGTTTGATCTTT
GGTGCCTGAAGTTCAACTCTGTCAATATTCCAAAAGAAGGACAGGCCTTT
CGCAGGCGATTATTTGCGAAATAAAATGTGCTTATAAAATGACAATACTC
CATTTCTTTTGGTCGCCGTACGTAAGTTTGAATTTTCTATAGGTAGACTT
TGCCCTCTGGGCATTCGATGGGGTAGGTGAAGACTAGCCCATCGAAAGGC
TTCTAGCACCAGCATCGTCGTCAAGCATGAGGAGCACGGGGAGCAGGAGG
AGCAGGAGGAGAAAGTGCAAGAGGAGAAAAAAACGCAGAAGGAGGATAAG
AGGAGAAATAGATTCAAGAGGGACGACGAGGACGAGGAGACGGAGACAGA
CTGTAAGCAGCAGCATTAGCAGCAAGGAAAAGAAACGCAGGAGGAGGAGC
AGGAGGACGAGGAAGAGGTCAAGGAGAAAGACGAAGAGGAGGAAGAGGAG
TTGGTGGTGGAAAAGGAAGAAGAGAAGGGGTACGAGGATGAAGTCGCGGT
GAAGGAGAGGAGGTGCTCGAAGAGGTGCAGGAGGAGGAGCAGCGTTAGTA
AAGAATACCAGGAGAAATAGTAGTAGGAGGAGGAGGAGCACAAGGAGAAG
CAAGAAGATGAAACGGACGAAGAAGATGAGGAAGAGCAGGAGGAGAAGGA
GTAATCCGAGGAGGAAGAGGGCGAGGAGGAGGAGGGGGAGGAGTAGGAGG
AGGAGGAGGAGGGGAGGAAGATCAGAATGAGTGCCGATTTTATACTTGAC
GCCATTCCTACTTCATTTACACGATTGTTACCATCAAGAGGTGGAGGAAG
AGGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|621416 >mRNA_12349-protein ID=mRNA_12349-protein|Name=jgi.p|Nanoce1779_2|621416|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MHRALSLLALGITLALTAAQPMLTLTSIKAVDSTSNNQDKWSMKGFLNDP
DADLISTIADEGLSADLVNSDDLLVSDVTFAAAACRDLSNGRGVLCKDAG
ARISFKRTKRVPHEAKVKAMKNHNKTDSASSYYSVSGVFRRQQFENTISN
SANLSGSLGNNQAFTDEPTLSNCREKGGARTTKLFCQ* back to topmRNA from alignment at scaffold_251:14631..16336+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_12349 ID=mRNA_12349|Name=jgi.p|Nanoce1779_2|621416|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp|location=Sequence derived from alignment at scaffold_251:14631..16336+ (Nannochloropsis oceanica)
ACAGCCAACTAGCTTCCCCCGTAAAACACCATGCATCGCGCCCTTTCTCT
GCTTGCCCTCGGCATCACCCTCGCCCTGACAGCGGCTCAGCCGATGTTGA
CCCTCACCTCCATTAAGGCAGTCGACTCGACAAGCAACAATCAGGACAAA
TGGAGCATGAAGGGCTTCCTCAACGATCCTGATGCCGATTTAATCTCGAC
CATCGCCGATGAGGGCTTGAGCGCGGACCTTGTAAACAGTGACGATCTTC
TTGTGAGTGATGTGACATTTGCCGCGGCTGCTTGTAGAGACCTCAGCAAC
GGCAGGGGAGTCCTTTGCAAGGATGCGGGCGCCCGTATCTCGTTCAAGAG
GACGAAGAGGGTACCGCATGAGGCCAAGGTGAAGGCGATGAAGAACCACA
ACAAGACGGACAGCGCTTCTTCCTACTACAGTGTGTCGGGTGTTTTCCGC
CGTCAGCAATTCGAGAACACTATCTCTAACTCGGCGAATCTATCAGGAAG
TCTTGGCAACAACCAGGCATTTACTGACGAGCCCACACTCTCTAACTGCA
GGGAGAAGGGGGGTGCCAGGACCACCAAGCTCTTCTGCCAGTAAATGCCA
TCGCATTGAGGTCGGGCCTGCACTCGGCGCTCGACTCACCGGCAAGAGAC
CCTCCACGTCCTGCCTCTTGTATATCTATGTGTGACTGTGTCTTGTATGC
CCGCTTTCAGGTTGGAAGCCCTCCAGTTTCCGTTCCTGACGCGTCGGTTT
GTCCATGTGCGTAAACAGTGTTCTTGTTTGATGTGTTGTGCATGTGTTGT
GCTGTGTATGTGTCCCATCTCCTCTCTCGAGCCCTTCTCGTGTTGTATGC
TTGTATTCCCCGGACGGCCCCAGAGAGCCAAGTCTCGGAGTTTGATCTTT
GGTGCCTGAAGTTCAACTCTGTCAATATTCCAAAAGAAGGACAGGCCTTT
CGCAGGCGATTATTTGCGAAATAAAATGTGCTTATAAAATGACAATACTC
CATTTCTTTTGGTCGCCGTACGTAAGTTTGAATTTTCTATAGGTAGACTT
TGCCCTCTGGGCATTCGATGGGGTAGGTGAAGACTAGCCCATCGAAAGGC
TTCTAGCACCAGCATCGTCGTCAAGCATGAGGAGCACGGGGAGCAGGAGG
AGCAGGAGGAGAAAGTGCAAGAGGAGAAAAAAACGCAGAAGGAGGATAAG
AGGAGAAATAGATTCAAGAGGGACGACGAGGACGAGGAGACGGAGACAGA
CTGTAAGCAGCAGCATTAGCAGCAAGGAAAAGAAACGCAGGAGGAGGAGC
AGGAGGACGAGGAAGAGGTCAAGGAGAAAGACGAAGAGGAGGAAGAGGAG
TTGGTGGTGGAAAAGGAAGAAGAGAAGGGGTACGAGGATGAAGTCGCGGT
GAAGGAGAGGAGGTGCTCGAAGAGGTGCAGGAGGAGGAGCAGCGTTAGTA
AAGAATACCAGGAGAAATAGTAGTAGGAGGAGGAGGAGCACAAGGAGAAG
CAAGAAGATGAAACGGACGAAGAAGATGAGGAAGAGCAGGAGGAGAAGGA
GTAATCCGAGGAGGAAGAGGGCGAGGAGGAGGAGGGGGAGGAGTAGGAGG
AGGAGGAGGAGGGGAGGAAGATCAGAATGAGTGCCGATTTTATACTTGAC
GCCATTCCTACTTCATTTACACGATTGTTACCATCAAGAGGTGGAGGAAG
AGGGAG back to topCoding sequence (CDS) from alignment at scaffold_251:14631..16336+ >mRNA_12349 ID=mRNA_12349|Name=jgi.p|Nanoce1779_2|621416|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_251:14631..16336+ (Nannochloropsis oceanica)
ATGCATCGCGCCCTTTCTCTGCTTGCCCTCGGCATCACCCTCGCCCTGAC
AGCGGCTCAGCCGATGTTGACCCTCACCTCCATTAAGGCAGTCGACTCGA
CAAGCAACAATCAGGACAAATGGAGCATGAAGGGCTTCCTCAACGATCCT
GATGCCGATTTAATCTCGACCATCGCCGATGAGGGCTTGAGCGCGGACCT
TGTAAACAGTGACGATCTTCTTGTGAGTGATGTGACATTTGCCGCGGCTG
CTTGTAGAGACCTCAGCAACGGCAGGGGAGTCCTTTGCAAGGATGCGGGC
GCCCGTATCTCGTTCAAGAGGACGAAGAGGGTACCGCATGAGGCCAAGGT
GAAGGCGATGAAGAACCACAACAAGACGGACAGCGCTTCTTCCTACTACA
GTGTGTCGGGTGTTTTCCGCCGTCAGCAATTCGAGAACACTATCTCTAAC
TCGGCGAATCTATCAGGAAGTCTTGGCAACAACCAGGCATTTACTGACGA
GCCCACACTCTCTAACTGCAGGGAGAAGGGGGGTGCCAGGACCACCAAGC
TCTTCTGCCAGTAA back to top
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