jgi.p|Nanoce1779_2|635409, mRNA_12343 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|635409
Unique Name	mRNA_12343
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2132
Alignment location	scaffold_251:1328..3944 -

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Properties


Property Name	Value
TranscriptId	635495
Track	FilteredModels2
ProteinId	635409

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_251	supercontig	scaffold_251:1328..3944 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|635409	gene_12343	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|635409	mRNA_12343-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12343	CDS_12343	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_251:1328..3944-
coding sequence from alignment at scaffold_251:1328..3944-

mRNA sequence

>mRNA_12343 ID=mRNA_12343|Name=jgi.p|Nanoce1779_2|635409|organism=Nannochloropsis oceanica|type=mRNA|length=2132bp
ATGGCTTTGAATGAAATTCGGCTACTCGCCTCCTTTCGCCACCCGCGCAT
CATCCGCTGCTACGAGACTTTCATGGACGGACCTACACACCTGTGCATTG
TTATGGAGTACTGCGGCTTCCAGGACCTGGCCCGCAAGATTCAGCGGTAC
CGGACGAGGGGGGAGCGAGTGGACGAACGCGTGGTGTGGGTATACTTGGT
GCAGTGCTTGGAGGCCCTGTCAGCATTGCATGCCTTGCGTGTACTCCATC
GTGACATCAAGCCCGCGAACATTCTGCTGGACGAGGAGGGGAATGCCAAG
CTGGGGGACATGAACGTGTCCAAGTCCCTGGACGACGAGACAGGCGAGGT
GCAATCGGTCATGGGTACGCTGCCCTACATGGCCCCTGAGATCTGGGAGG
GCAAGCCATACGGATTCGCCGCCGATCTATACTCCCTCGGTTGCACGCTC
TTCGAGCTCACGACCCTCGTACAGCCCTTCGATGGGCCCAACCCTCTTTA
CCTAAGGCGGGCCGTGCTCAAGCGCCAGTTTCAGGCACGGCTGGACACGG
ATGACTTCTACTCTCAGGAATTGCGAGACCTGATCCTCCTCCGCCTCCTA
CATCCTGATCCTGCCCAGCGTCTCACCGCCGACAGCCTCATGCGGGTGCC
CGAGGCCTGAGGTGACGCGGGAAGACTCGCTGACGGCCTTGCTCCGCTCG
CCCTTCGCCACCTCCTCCTCCGGCACCACCAGCAGGACTACTATTGAGAC
AAAGCCGCCGGTGGGGGAGGGAGGAGGAGATGTGGTCACGACTCACCAGC
GACACTGCAGGGAGGAAGGACAGACACTCGTGCACTCTTTATCTTCTCCC
GTGGCCTCTGCTCCCTGCTCCTCGTCGTCCCCGGGAGCATCAGTCATGTC
ACCGCCCTCCGCAGCAGCGACGATGACCACCACCACCGACGGGGCAGCAG
CGACAGCAGTCGCAGGCAAGCCCAGACATGGGGGCAAGCGCCCGAGGAAG
AAACGGCCCGACTCCTTGTCTACCGCCAGTATGACAACCGCGCCCGCCTC
CTCCGCCTTGGAGAGCAGTGCCTCCCTCCTGCATAGCCTCTCCCTCGATC
AGACTCCAGACAATGTCTGCGAGGAAAGGGAGGAAGGCGGGGAGGGAAAT
TCGAGGGAAAAGCTTAACAGCGAAGGGCAAGTGCAATGGGAGGCCTTACC
TACGCCGAATTCTTTCCCCCTCCCTCTCTTGTCGCCCTGTCCCGCCAGCC
CTCCCTTTGAGCAGCAGCTGATGGTCAGGAGGGAGGGGGGAAAGGTTGAA
GGAGGAGAGGGGGAGGAGGGAGGAGGAAATGAGGGGCTTATAAAGGGGGA
GGAAAGAGAGGGGCTAGACGGATGTCTCACTGATAAAAAATAAGGAAATA
TTCAACCGACAGAATGAAAGAGTAGATTTGTGTGTGTGTGTGTGTGTGTG
TGTTTGACTCGCAAAACAGCCAGAGAAAGAGAGAGAGGGAAGAGACACAT
GGTCTCCTCCTTCTTTCCCCCTCGATCCCTTCTCGTAGATGCAAACTTTC
CGTATATCTTTTTGCTTTGTCAAGACTGGTGAGTCTGTGTGTCTCGTCCT
TAATCCTCTCTTCCTTCCCTCCCTCCCCCTCTCCCTCTCTAACCCTGCAC
GCGCAACAGCCCCCGAAAGATCTCGTACGTGGCAAAAAAGATGGCATTGG
CCGGCACCTTGTGCAGTAGCCGCGGCACTGTGCCCTTGAGGAACGCGGCC
GCCCCCTCGTCCGCCCATAGCCCCCGCACGGCCGACCATACGGTGGGGTA
GAGGCCAGGTTGGGTCATAACGCGCGTCTTGACCACGTCCATGGGATTCG
ACACGAGGGAGCCCACCCCCCCAGCAAAGGCTCCCATCATCGAGTCCTCC
AAGGGCGTGGACAGCTTTCCCCCTCCGGCTTTTCGCCGGGCCGCTGCTCG
AGCCCGTCGGAGGGATTCGTAAGTGAGCAGGGTGACGATGGCATAGGGCA
CATCCCGCATGATCTGCGAAGCTACGCCGCTGCTCCCAAAGAAAGCGCCC
AGCCCACCCTCCGTCCGGTACATGGTGCGCAAAGCCTCCCCTGTGCTGCT
GTACATGCCCGCCTGCAGCCGCTGTTTCACCA

protein sequence of jgi.p|Nanoce1779_2|635409

>mRNA_12343-protein ID=mRNA_12343-protein|Name=jgi.p|Nanoce1779_2|635409|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MALNEIRLLASFRHPRIIRCYETFMDGPTHLCIVMEYCGFQDLARKIQRY
RTRGERVDERVVWVYLVQCLEALSALHALRVLHRDIKPANILLDEEGNAK
LGDMNVSKSLDDETGEVQSVMGTLPYMAPEIWEGKPYGFAADLYSLGCTL
FELTTLVQPFDGPNPLYLRRAVLKRQFQARLDTDDFYSQELRDLILLRLL
HPDPAQRLTADSLMRVPEA*

mRNA from alignment at scaffold_251:1328..3944-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12343 ID=mRNA_12343|Name=jgi.p|Nanoce1779_2|635409|organism=Nannochloropsis oceanica|type=mRNA|length=2617bp|location=Sequence derived from alignment at scaffold_251:1328..3944- (Nannochloropsis oceanica)
ATGGCTTTGAATGAAATTCGGCTACTCGCCTCCTTTCGCCACCCGCGCAT
CATCCGCTGCTACGAGACTTTCATGGACGGACCTACACACCTGTGCATTG
TTATGGAGTACTGCGGCTTCCAGGACCTGGCCCGCAAGATTCAGCGGTAC
CGGACGAGGGGGGAGCGAGTGGACGAACGCGTGGTGTGGGTATACTTGGT
GCAGTGCTTGGAGGCCCTGTCAGCATTGCATGCCTTGCGTGTACTCCATC
GTGACATCAAGCCCGCGAACATTCTGCTGGACGAGGAGGGGAATGCCAAG
CTGGGGGACATGAACGTGTCCAAGTCCCTGGACGACGAGACAGGCGAGGT
GCAATCGGTCATGGGTACGCTGCCCTACATGGCCCCTGAGATCTGGGAGG
GCAAGCCATACGGATTCGCCGCCGATCTATACTCCCTCGGTTGCACGCTC
TTCGAGCTCACGACCCTCGTACAGCCCTTCGATGGGCCCAACCCTCTTTA
CCTAAGGCGGGCCGTGCTCAAGCGCCAGTTTCAGGCACGGCTGGACACGG
ATGACTTCTACTCTCAGGAATTGCGAGACCTGATCCTCCTCCGCCTCCTA
CATCCTGATCCTGCCCAGCGTCTCACCGCCGACAGCCTCATGCGGGTGCC
CGAGGTAGCCTCTCGGTTGGACTTGGTGCGGCACAAGCTCCCCAAGGACT
TGCCCGCCTCCCTCCCCCTCACCCCTGCTGCCTTGCTGATACATCATTTG
AACAGCAATGGCGGTAATAGCAGCAGCAGCGGTAGCAGCAATAGCAAAGA
GGAAGAAGGTGTGGATACAGGCGCAGAAACACCAAGCAGCAGGAGGATCA
TTGTCACCGCCACTAGCACCAACTACACCAGCAGCAGTAACAACAACAAC
AACGACAACGACACCACCGTGAACAGTCTGTCGCTGACGCTGGAAGAACT
GCCTTTCCTCCTACCCCACCTCCTACCGGGGCCCTCTTACCCTACTCTTT
CTCCTCCTCCTTCTCCTCCTTCTCCCTCTGCCACACCGAACGTCAACAGA
AGCAACAGCAGGAGCAATAACAGCATTGACACTCCAAGCAATGCGACATT
CCTCCCTTCTCCTCTTCCGCCCTCCCTTTCCCTTTCCAGGCCTGAGGTGA
CGCGGGAAGACTCGCTGACGGCCTTGCTCCGCTCGCCCTTCGCCACCTCC
TCCTCCGGCACCACCAGCAGGACTACTATTGAGACAAAGCCGCCGGTGGG
GGAGGGAGGAGGAGATGTGGTCACGACTCACCAGCGACACTGCAGGGAGG
AAGGACAGACACTCGTGCACTCTTTATCTTCTCCCGTGGCCTCTGCTCCC
TGCTCCTCGTCGTCCCCGGGAGCATCAGTCATGTCACCGCCCTCCGCAGC
AGCGACGATGACCACCACCACCGACGGGGCAGCAGCGACAGCAGTCGCAG
GCAAGCCCAGACATGGGGGCAAGCGCCCGAGGAAGAAACGGCCCGACTCC
TTGTCTACCGCCAGTATGACAACCGCGCCCGCCTCCTCCGCCTTGGAGAG
CAGTGCCTCCCTCCTGCATAGCCTCTCCCTCGATCAGACTCCAGACAATG
TCTGCGAGGAAAGGGAGGAAGGCGGGGAGGGAAATTCGAGGGAAAAGCTT
AACAGCGAAGGGCAAGTGCAATGGGAGGCCTTACCTACGCCGAATTCTTT
CCCCCTCCCTCTCTTGTCGCCCTGTCCCGCCAGCCCTCCCTTTGAGCAGC
AGCTGATGGTCAGGAGGGAGGGGGGAAAGGTTGAAGGAGGAGAGGGGGAG
GAGGGAGGAGGAAATGAGGGGCTTATAAAGGGGGAGGAAAGAGAGGGGCT
AGACGGATGTCTCACTGATAAAAAATAAGGAAATATTCAACCGACAGAAT
GAAAGAGTAGATTTGTGTGTGTGTGTGTGTGTGTGTGTTTGACTCGCAAA
ACAGCCAGAGAAAGAGAGAGAGGGAAGAGACACATGGTCTCCTCCTTCTT
TCCCCCTCGATCCCTTCTCGTAGATGCAAACTTTCCGTATATCTTTTTGC
TTTGTCAAGACTGGTGAGTCTGTGTGTCTCGTCCTTAATCCTCTCTTCCT
TCCCTCCCTCCCCCTCTCCCTCTCTAACCCTGCACGCGCAACAGCCCCCG
AAAGATCTCGTACGTGGCAAAAAAGATGGCATTGGCCGGCACCTTGTGCA
GTAGCCGCGGCACTGTGCCCTTGAGGAACGCGGCCGCCCCCTCGTCCGCC
CATAGCCCCCGCACGGCCGACCATACGGTGGGGTAGAGGCCAGGTTGGGT
CATAACGCGCGTCTTGACCACGTCCATGGGATTCGACACGAGGGAGCCCA
CCCCCCCAGCAAAGGCTCCCATCATCGAGTCCTCCAAGGGCGTGGACAGC
TTTCCCCCTCCGGCTTTTCGCCGGGCCGCTGCTCGAGCCCGTCGGAGGGA
TTCGTAAGTGAGCAGGGTGACGATGGCATAGGGCACATCCCGCATGATCT
GCGAAGCTACGCCGCTGCTCCCAAAGAAAGCGCCCAGCCCACCCTCCGTC
CGGTACATGGTGCGCAAAGCCTCCCCTGTGCTGCTGTACATGCCCGCCTG
CAGCCGCTGTTTCACCA

Coding sequence (CDS) from alignment at scaffold_251:1328..3944-

>mRNA_12343 ID=mRNA_12343|Name=jgi.p|Nanoce1779_2|635409|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_251:1328..3944- (Nannochloropsis oceanica)
GCCTGAATGGCTTTGAATGAAATTCGGCTACTCGCCTCCTTTCGCCACCC
GCGCATCATCCGCTGCTACGAGACTTTCATGGACGGACCTACACACCTGT
GCATTGTTATGGAGTACTGCGGCTTCCAGGACCTGGCCCGCAAGATTCAG
CGGTACCGGACGAGGGGGGAGCGAGTGGACGAACGCGTGGTGTGGGTATA
CTTGGTGCAGTGCTTGGAGGCCCTGTCAGCATTGCATGCCTTGCGTGTAC
TCCATCGTGACATCAAGCCCGCGAACATTCTGCTGGACGAGGAGGGGAAT
GCCAAGCTGGGGGACATGAACGTGTCCAAGTCCCTGGACGACGAGACAGG
CGAGGTGCAATCGGTCATGGGTACGCTGCCCTACATGGCCCCTGAGATCT
GGGAGGGCAAGCCATACGGATTCGCCGCCGATCTATACTCCCTCGGTTGC
ACGCTCTTCGAGCTCACGACCCTCGTACAGCCCTTCGATGGGCCCAACCC
TCTTTACCTAAGGCGGGCCGTGCTCAAGCGCCAGTTTCAGGCACGGCTGG
ACACGGATGACTTCTACTCTCAGGAATTGCGAGACCTGATCCTCCTCCGC
CTCCTACATCCTGATCCTGCCCAGCGTCTCACCGCCGACAGCCTCATGCG
GGTGCCCGAGGCCTGAATGGCTTTGAATGAAATTCGGCTACTCGCCTCCT
TTCGCCACCCGCGCATCATCCGCTGCTACGAGACTTTCATGGACGGACCT
ACACACCTGTGCATTGTTATGGAGTACTGCGGCTTCCAGGACCTGGCCCG
CAAGATTCAGCGGTACCGGACGAGGGGGGAGCGAGTGGACGAACGCGTGG
TGTGGGTATACTTGGTGCAGTGCTTGGAGGCCCTGTCAGCATTGCATGCC
TTGCGTGTACTCCATCGTGACATCAAGCCCGCGAACATTCTGCTGGACGA
GGAGGGGAATGCCAAGCTGGGGGACATGAACGTGTCCAAGTCCCTGGACG
ACGAGACAGGCGAGGTGCAATCGGTCATGGGTACGCTGCCCTACATGGCC
CCTGAGATCTGGGAGGGCAAGCCATACGGATTCGCCGCCGATCTATACTC
CCTCGGTTGCACGCTCTTCGAGCTCACGACCCTCGTACAGCCCTTCGATG
GGCCCAACCCTCTTTACCTAAGGCGGGCCGTGCTCAAGCGCCAGTTTCAG
GCACGGCTGGACACGGATGACTTCTACTCTCAGGAATTGCGAGACCTGAT
CCTCCTCCGCCTCCTACATCCTGATCCTGCCCAGCGTCTCACCGCCGACA
GCCTCATGCGGGTGCCCGAG

Synonyms

Publications