scaffold_204, scaffold_204 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_204
Unique Name	scaffold_204
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	24692
Alignment location	jgi.p\|Nanoce1779_2\|534993:12918..13724 +
Alignment location	jgi.p\|Nanoce1779_2\|534993:12918..13724 +
Alignment location	CDS_12010:12918..13724 +
Alignment location	jgi.p\|Nanoce1779_2\|571076:11293..11739 -
Alignment location	jgi.p\|Nanoce1779_2\|571076:11293..11739 -
Alignment location	CDS_12009:11293..11739 -
Alignment location	jgi.p\|Nanoce1779_2\|620130:6297..9231 -
Alignment location	jgi.p\|Nanoce1779_2\|620130:6297..9231 -
Alignment location	CDS_12008:9155..9194 -
Alignment location	CDS_12008:8820..8900 -
Alignment location	CDS_12008:8625..8697 -
Alignment location	CDS_12008:8575..8576 -
Alignment location	CDS_12008:8400..8506 -
Alignment location	CDS_12008:7894..8021 -
Alignment location	CDS_12008:7607..7619 -
Alignment location	jgi.p\|Nanoce1779_2\|620139:12441..15003 -
Alignment location	jgi.p\|Nanoce1779_2\|620139:12441..15003 -
Alignment location	CDS_12011:14722..14879 -
Alignment location	CDS_12011:14072..14684 -
Alignment location	jgi.p\|Nanoce1779_2\|620143:14979..18035 -
Alignment location	jgi.p\|Nanoce1779_2\|620143:14979..18035 -
Alignment location	CDS_12012:17934..18015 -
Alignment location	CDS_12012:17645..17806 -
Alignment location	CDS_12012:17504..17614 -
Alignment location	CDS_12012:17161..17336 -
Alignment location	CDS_12012:16728..17037 -
Alignment location	CDS_12012:16614..16651 -
Alignment location	CDS_12012:16228..16382 -
Alignment location	CDS_12012:16033..16069 -
Alignment location	CDS_12012:15915..15983 -
Alignment location	jgi.p\|Nanoce1779_2\|620152:24032..24685 -
Alignment location	jgi.p\|Nanoce1779_2\|620152:24032..24685 -
Alignment location	CDS_12015:24268..24619 -
Alignment location	CDS_12015:24132..24254 -
Alignment location	jgi.p\|Nanoce1779_2\|644793:383..3256 +
Alignment location	jgi.p\|Nanoce1779_2\|644793:383..3256 +
Alignment location	CDS_12006:383..470 +
Alignment location	CDS_12006:572..690 +
Alignment location	CDS_12006:874..988 +
Alignment location	CDS_12006:1168..1256 +
Alignment location	CDS_12006:1532..1691 +
Alignment location	CDS_12006:2022..2098 +
Alignment location	CDS_12006:2341..2433 +
Alignment location	CDS_12006:2655..2731 +
Alignment location	CDS_12006:2820..2928 +
Alignment location	CDS_12006:3149..3256 +
Alignment location	jgi.p\|Nanoce1779_2\|654035:19452..19970 -
Alignment location	jgi.p\|Nanoce1779_2\|654035:19452..19970 -
Alignment location	CDS_12013:19452..19970 -
Alignment location	jgi.p\|Nanoce1779_2\|676084:4009..6241 +
Alignment location	jgi.p\|Nanoce1779_2\|676084:4009..6241 +
Alignment location	CDS_12007:4151..4244 +
Alignment location	CDS_12007:4497..4587 +
Alignment location	CDS_12007:5383..5420 +
Alignment location	CDS_12007:5596..5702 +
Alignment location	CDS_12007:5825..5915 +
Alignment location	CDS_12007:6070..6125 +
Alignment location	jgi.p\|Nanoce1779_2\|676087:20094..22565 +
Alignment location	jgi.p\|Nanoce1779_2\|676087:20094..22565 +
Alignment location	CDS_12014:20378..20779 +
Alignment location	CDS_12014:21035..21058 +
Alignment location	CDS_12014:21319..21633 +
Alignment location	jgi.p\|Nanoce1779_2\|534993:12918..13724 +
Alignment location	jgi.p\|Nanoce1779_2\|571076:11293..11739 -
Alignment location	jgi.p\|Nanoce1779_2\|620130:7607..9194 -
Alignment location	jgi.p\|Nanoce1779_2\|620139:14072..14879 -
Alignment location	jgi.p\|Nanoce1779_2\|620143:15915..18015 -
Alignment location	jgi.p\|Nanoce1779_2\|620152:24132..24619 -
Alignment location	jgi.p\|Nanoce1779_2\|644793:383..3256 +
Alignment location	jgi.p\|Nanoce1779_2\|654035:19452..19970 -
Alignment location	jgi.p\|Nanoce1779_2\|676084:4151..6125 +
Alignment location	jgi.p\|Nanoce1779_2\|676087:20378..21633 +
Alignment location	ncniL011:384..22565 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|534993	gene	jgi.p\|Nanoce1779_2\|534993:12918..13724 +
jgi.p\|Nanoce1779_2\|534993	mRNA	jgi.p\|Nanoce1779_2\|534993:12918..13724 +
CDS_12010	CDS	CDS_12010:12918..13724 +
jgi.p\|Nanoce1779_2\|571076	gene	jgi.p\|Nanoce1779_2\|571076:11293..11739 -
jgi.p\|Nanoce1779_2\|571076	mRNA	jgi.p\|Nanoce1779_2\|571076:11293..11739 -
CDS_12009	CDS	CDS_12009:11293..11739 -
jgi.p\|Nanoce1779_2\|620130	gene	jgi.p\|Nanoce1779_2\|620130:6297..9231 -
jgi.p\|Nanoce1779_2\|620130	mRNA	jgi.p\|Nanoce1779_2\|620130:6297..9231 -
CDS_12008	CDS	CDS_12008:9155..9194 -
CDS_12008	CDS	CDS_12008:8820..8900 -
CDS_12008	CDS	CDS_12008:8625..8697 -
CDS_12008	CDS	CDS_12008:8575..8576 -
CDS_12008	CDS	CDS_12008:8400..8506 -
CDS_12008	CDS	CDS_12008:7894..8021 -
CDS_12008	CDS	CDS_12008:7607..7619 -
jgi.p\|Nanoce1779_2\|620139	gene	jgi.p\|Nanoce1779_2\|620139:12441..15003 -
jgi.p\|Nanoce1779_2\|620139	mRNA	jgi.p\|Nanoce1779_2\|620139:12441..15003 -
CDS_12011	CDS	CDS_12011:14722..14879 -
CDS_12011	CDS	CDS_12011:14072..14684 -
jgi.p\|Nanoce1779_2\|620143	gene	jgi.p\|Nanoce1779_2\|620143:14979..18035 -
jgi.p\|Nanoce1779_2\|620143	mRNA	jgi.p\|Nanoce1779_2\|620143:14979..18035 -
CDS_12012	CDS	CDS_12012:17934..18015 -
CDS_12012	CDS	CDS_12012:17645..17806 -
CDS_12012	CDS	CDS_12012:17504..17614 -
CDS_12012	CDS	CDS_12012:17161..17336 -
CDS_12012	CDS	CDS_12012:16728..17037 -
CDS_12012	CDS	CDS_12012:16614..16651 -
CDS_12012	CDS	CDS_12012:16228..16382 -
CDS_12012	CDS	CDS_12012:16033..16069 -
CDS_12012	CDS	CDS_12012:15915..15983 -
jgi.p\|Nanoce1779_2\|620152	gene	jgi.p\|Nanoce1779_2\|620152:24032..24685 -
jgi.p\|Nanoce1779_2\|620152	mRNA	jgi.p\|Nanoce1779_2\|620152:24032..24685 -
CDS_12015	CDS	CDS_12015:24268..24619 -
CDS_12015	CDS	CDS_12015:24132..24254 -
jgi.p\|Nanoce1779_2\|644793	gene	jgi.p\|Nanoce1779_2\|644793:383..3256 +
jgi.p\|Nanoce1779_2\|644793	mRNA	jgi.p\|Nanoce1779_2\|644793:383..3256 +
CDS_12006	CDS	CDS_12006:383..470 +
CDS_12006	CDS	CDS_12006:572..690 +
CDS_12006	CDS	CDS_12006:874..988 +
CDS_12006	CDS	CDS_12006:1168..1256 +
CDS_12006	CDS	CDS_12006:1532..1691 +
CDS_12006	CDS	CDS_12006:2022..2098 +
CDS_12006	CDS	CDS_12006:2341..2433 +
CDS_12006	CDS	CDS_12006:2655..2731 +
CDS_12006	CDS	CDS_12006:2820..2928 +
CDS_12006	CDS	CDS_12006:3149..3256 +
jgi.p\|Nanoce1779_2\|654035	gene	jgi.p\|Nanoce1779_2\|654035:19452..19970 -
jgi.p\|Nanoce1779_2\|654035	mRNA	jgi.p\|Nanoce1779_2\|654035:19452..19970 -
CDS_12013	CDS	CDS_12013:19452..19970 -
jgi.p\|Nanoce1779_2\|676084	gene	jgi.p\|Nanoce1779_2\|676084:4009..6241 +
jgi.p\|Nanoce1779_2\|676084	mRNA	jgi.p\|Nanoce1779_2\|676084:4009..6241 +
CDS_12007	CDS	CDS_12007:4151..4244 +
CDS_12007	CDS	CDS_12007:4497..4587 +
CDS_12007	CDS	CDS_12007:5383..5420 +
CDS_12007	CDS	CDS_12007:5596..5702 +
CDS_12007	CDS	CDS_12007:5825..5915 +
CDS_12007	CDS	CDS_12007:6070..6125 +
jgi.p\|Nanoce1779_2\|676087	gene	jgi.p\|Nanoce1779_2\|676087:20094..22565 +
jgi.p\|Nanoce1779_2\|676087	mRNA	jgi.p\|Nanoce1779_2\|676087:20094..22565 +
CDS_12014	CDS	CDS_12014:20378..20779 +
CDS_12014	CDS	CDS_12014:21035..21058 +
CDS_12014	CDS	CDS_12014:21319..21633 +
jgi.p\|Nanoce1779_2\|534993	polypeptide	jgi.p\|Nanoce1779_2\|534993:12918..13724 +
jgi.p\|Nanoce1779_2\|571076	polypeptide	jgi.p\|Nanoce1779_2\|571076:11293..11739 -
jgi.p\|Nanoce1779_2\|620130	polypeptide	jgi.p\|Nanoce1779_2\|620130:7607..9194 -
jgi.p\|Nanoce1779_2\|620139	polypeptide	jgi.p\|Nanoce1779_2\|620139:14072..14879 -
jgi.p\|Nanoce1779_2\|620143	polypeptide	jgi.p\|Nanoce1779_2\|620143:15915..18015 -
jgi.p\|Nanoce1779_2\|620152	polypeptide	jgi.p\|Nanoce1779_2\|620152:24132..24619 -
jgi.p\|Nanoce1779_2\|644793	polypeptide	jgi.p\|Nanoce1779_2\|644793:383..3256 +
jgi.p\|Nanoce1779_2\|654035	polypeptide	jgi.p\|Nanoce1779_2\|654035:19452..19970 -
jgi.p\|Nanoce1779_2\|676084	polypeptide	jgi.p\|Nanoce1779_2\|676084:4151..6125 +
jgi.p\|Nanoce1779_2\|676087	polypeptide	jgi.p\|Nanoce1779_2\|676087:20378..21633 +
ncniL011	syntenic_region	ncniL011:384..22565 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications