jgi.p|Nanoce1779_2|676084, mRNA_12007 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|676084
Unique Name	mRNA_12007
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	735
Alignment location	scaffold_204:4009..6241 +

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Properties


Property Name	Value
TranscriptId	676170
Track	FilteredModels2
ProteinId	676084

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_204	supercontig	scaffold_204:4009..6241 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|676084	gene_12007	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|676084	mRNA_12007-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12007	CDS_12007	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_204:4009..6241+
coding sequence from alignment at scaffold_204:4009..6241+

mRNA sequence

>mRNA_12007 ID=mRNA_12007|Name=jgi.p|Nanoce1779_2|676084|organism=Nannochloropsis oceanica|type=mRNA|length=735bp
CCTCACTCGCTCGTCATGCGCTTCTTGCTTCATTTCTTCATCGCGACTCA
TCTTCGGATCGTGTGTCTAATCTATATGACCGTACTTCACACACAATACA
GTAAGTCAGCTACCAAAGGACAACCGCGAAGACGGCAGCGACATGCCGGA
GGGGCATGAGGTGATGCGGGCCATGGTGGGGGACGGCGCGGGCGATGACT
TCAATGTCGGCGTTGATAAGTATAACCTAACTCACCTACTCTTGGGTTAT
GTGAAGGAAGAGGTCGTGGCAGAGTCAGGGATCAACGTGCGACACGAGGC
CTGGATGCCAGGTGAGAAGGGCCACGAACAGCCGCCTCCATCGCCGAGCC
CGCCTGCCGGTGGGAGTTTGGGGGCTCACGGCCGTCTTCGGGCTTTACTG
GCCGAGCTCTTCCCCCCTCAGCCCACAACTGCCATGATGGGAGCCGTCTG
CAATTGTGCGCGAGGCGTGCAGTTCCTCTCCCCTGTGGTAGTTGAGTATG
CCTTGGAGGTCAACGGCCTGGAGGGTGCACTTTCCGTTCCCTTGATGCTG
GCCTGCTTGACCGGCACCTGGGTGCGGGTGCTGCCCGAGACGAAGGACAT
GACCTTGTCCTCGCTGTAGGGGGATTGGGAGTAGGTGGAGAAAGGGATGA
GAGAGAGCAGGAAAGGTGGAGAGAGAGGAAGAGGGGAAAGCTTTTTGGCA
TGTGGATTTTATGAGTCGTCGGGGGTTGCTTGCCT

protein sequence of jgi.p|Nanoce1779_2|676084

>mRNA_12007-protein ID=mRNA_12007-protein|Name=jgi.p|Nanoce1779_2|676084|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MPEGHEVMRAMVGDGAGDDFNVGVDKYNLTHLLLGYVKEEVVAESGINVR
HEAWMPGEKGHEQPPPSPSPPAGGSLGAHGRLRALLAELFPPQPTTAMMG
AVCNCARGVQFLSPVVVEYALEVNGLEGALSVPLMLACLTGTWVRVLPET
KDMTLSSL*

mRNA from alignment at scaffold_204:4009..6241+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12007 ID=mRNA_12007|Name=jgi.p|Nanoce1779_2|676084|organism=Nannochloropsis oceanica|type=mRNA|length=2233bp|location=Sequence derived from alignment at scaffold_204:4009..6241+ (Nannochloropsis oceanica)
CCTCACTCGCTCGTCATGCGCTTCTTGCTTCATTTCTTCATCGCGACTCA
TCTTCGGATCGTGTGTCTAATCTATATGACCGTACTTCACACACAATACA
GTAAGTCAGCTACCAAAGGACAACCGCGAAGACGGCAGCGACATGCCGGA
GGGGCATGAGGTGATGCGGGCCATGGTGGGGGACGGCGCGGGCGATGACT
TCAATGTCGGCGTTGATAAGTATAACCTAACTCACCGTGCGCCCTATCCT
CCTATCCTATCCCTAACCCCAAACCCATAAGCCTTCTTGTGAGCCAAACA
GCGATGTGCCCATCCACTTCTCCTGGACAATCTTCCTCTTCTGTTGGTTG
GGCAGGTTTTTCGATTTGCTTGATCTCGGCACGTACAAGCCAAATTTATG
CATCTCACCCGTCTGTCCACGCTCCAACCCTCCTTATACCCCCACCGCCC
CCCATTTTCCCGCACCCACCTTCTTTCACTTTTCCTAGTACTCTTGGGTT
ATGTGAAGGAAGAGGTCGTGGCAGAGTCAGGGATCAACGTGCGACACGAG
GCCTGGATGCCAGGTGAGAAGGGCCACGAGTAAGGCAGGGACACAATTCT
AAATTGATGAACTCACAACGCCCACGCAGGACGCTTGTCCTTTTTTCTAA
ATTGAATAATTAATCCACAAAACACGGTGAAAGTGTCTCGTCTCCCTCCC
CTTCATCGTGCTCCAACCCTCACATCAGGGACGGGGGGGGGTCGTTGCAG
GCCTTCTGGCCGACCGGATGGGCAAGCGCGACATCCTGGCAGTGACCGTT
TTAACCATCCCACCCCCAGGGAGGGAGAAAGGGAAGGAACGAGGTTCATT
GGATGGCCATGTCTACCCATAAGCCGAGAGGGAGCGAGCGAAGGAGCAGA
CGCTGCCTCTACTCGGGGGCCTAATGCGCAGAGGAAGCCTTTCATTTCCG
ATCACCTTTTTCCGTCCTCCCATCTCACTCCTTACAACCACCGCTCCTTT
CCCGCCCTCTCCCCCCTCTGCAGCTGGTTGCCGGGTTTTTGGACGAGTGA
GGTCCACCGGGGCACGGCCGAGAGCTAAGCGTGGGTGCTCACTGCGCAGT
GTGGGCAAGCGATAGGCGGGAAGGCTGAATTGGAGGGAAGGAGGGGGGAA
GGAAAAGAGGGCGAATGAGCGAAGCAGCGCCAGCTAATGTCAACAAATCC
TTACCTTCTCGCAAGCAGCTTTTCCTTCGGCTTCGTCTCGAATAGCTTCA
GTCGTCGTCCATCTGTTTCGCTTTACCGCCTCCTGGTACGTTCCGTCCCT
CCCTCCCCCCCCTCCCTCCCTCCCTCCCTCCCCCCCCTCCCTCTCTTGCA
CTCACCCGGCCGTCCGCCTCACAGACAGCCGCCTCCATCGCCGAGCCCGC
CTGCCGGTGGGAGTACCTGATCGACCACAACATTAACCTCTGGTGCACTA
TGCTCGCTCGGTACGTTCTTCTTAGGCACACCTTTTTGTCAAAGACTCTT
GTAATCACGACTTGCATCCCTTTCCTTTCCTTTCCTTCCTTTTTCTTCCC
TCTTTCCCGCCTTCCCTCCCTCCCTCCCTCCTTCCAGGTTTGGGGGCTCA
CGGCCGTCTTCGGGCTTTACTGGCCGAGCTCTTCCCCCCTCAGCCCACAA
CTGCCATGATGGGAGCCGTCTGCAATTGTGCGCGAGGCGTGCAGGTATGG
AGCAGGGGGAGGGAGGGGGAGGGGGAGGACGTGGGATCACCTGTGATGGC
ACGAGACAAATTACTTCTTTTTCCCCTTCCTCGTCTTTCTTCCCTCCCTC
CTTTCCTCCTCTCTAGTTCCTCTCCCCTGTGGTAGTTGAGTATGCCTTGG
AGGTCAACGGCCTGGAGGGTGCACTTTCCGTTCCCTTGATGCTGGCCTGC
TTGACCGGTTCGACCCGTCACCCACTCCCTCCTTCCCTCCCTTCGTCTCT
TCAACCCTCTCTTGGTCAACTCTCACTGGTACTCTCTGGCTCCTCCTTTC
ATTCCCTTTCTCGCTCGCTGGCCCCCTTCCTCCCTCCTTTTTGATTTCGC
CCTCTCCCTAGGCACCTGGGTGCGGGTGCTGCCCGAGACGAAGGACATGA
CCTTGTCCTCGCTGTAGGGGGATTGGGAGTAGGTGGAGAAAGGGATGAGA
GAGAGCAGGAAAGGTGGAGAGAGAGGAAGAGGGGAAAGCTTTTTGGCATG
TGGATTTTATGAGTCGTCGGGGGTTGCTTGCCT

Coding sequence (CDS) from alignment at scaffold_204:4009..6241+

>mRNA_12007 ID=mRNA_12007|Name=jgi.p|Nanoce1779_2|676084|organism=Nannochloropsis oceanica|type=CDS|length=2862bp|location=Sequence derived from alignment at scaffold_204:4009..6241+ (Nannochloropsis oceanica)
ATGCCGGAGGGGCATGAGGTGATGCGGGCCATGGTGGGGGACGGCGCGGG
CGATGACTTCAATGTCGGCGTTGATAAGTATAACCTAACTCACCTACTCT
TGGGTTATGTGAAGGAAGAGGTCGTGGCAGAGTCAGGGATCAACGTGCGA
CACGAGGCCTGGATGCCAGGTGAGAAGGGCCACGAACAGCCGCCTCCATC
GCCGAGCCCGCCTGCCGGTGGGAGTTTGGGGGCTCACGGCCGTCTTCGGG
CTTTACTGGCCGAGCTCTTCCCCCCTCAGCCCACAACTGCCATGATGGGA
GCCGTCTGCAATTGTGCGCGAGGCGTGCAGTTCCTCTCCCCTGTGGTAGT
TGAGTATGCCTTGGAGGTCAACGGCCTGGAGGGTGCACTTTCCGTTCCCT
TGATGCTGGCCTGCTTGACCGGCACCTGGGTGCGGGTGCTGCCCGAGACG
AAGGACATGACCTTGTCCTCGCTGTAGATGCCGGAGGGGCATGAGGTGAT
GCGGGCCATGGTGGGGGACGGCGCGGGCGATGACTTCAATGTCGGCGTTG
ATAAGTATAACCTAACTCACCTACTCTTGGGTTATGTGAAGGAAGAGGTC
GTGGCAGAGTCAGGGATCAACGTGCGACACGAGGCCTGGATGCCAGGTGA
GAAGGGCCACGAACAGCCGCCTCCATCGCCGAGCCCGCCTGCCGGTGGGA
GTTTGGGGGCTCACGGCCGTCTTCGGGCTTTACTGGCCGAGCTCTTCCCC
CCTCAGCCCACAACTGCCATGATGGGAGCCGTCTGCAATTGTGCGCGAGG
CGTGCAGTTCCTCTCCCCTGTGGTAGTTGAGTATGCCTTGGAGGTCAACG
GCCTGGAGGGTGCACTTTCCGTTCCCTTGATGCTGGCCTGCTTGACCGGC
ACCTGGGTGCGGGTGCTGCCCGAGACGAAGGACATGACCTTGTCCTCGCT
GTAGATGCCGGAGGGGCATGAGGTGATGCGGGCCATGGTGGGGGACGGCG
CGGGCGATGACTTCAATGTCGGCGTTGATAAGTATAACCTAACTCACCTA
CTCTTGGGTTATGTGAAGGAAGAGGTCGTGGCAGAGTCAGGGATCAACGT
GCGACACGAGGCCTGGATGCCAGGTGAGAAGGGCCACGAACAGCCGCCTC
CATCGCCGAGCCCGCCTGCCGGTGGGAGTTTGGGGGCTCACGGCCGTCTT
CGGGCTTTACTGGCCGAGCTCTTCCCCCCTCAGCCCACAACTGCCATGAT
GGGAGCCGTCTGCAATTGTGCGCGAGGCGTGCAGTTCCTCTCCCCTGTGG
TAGTTGAGTATGCCTTGGAGGTCAACGGCCTGGAGGGTGCACTTTCCGTT
CCCTTGATGCTGGCCTGCTTGACCGGCACCTGGGTGCGGGTGCTGCCCGA
GACGAAGGACATGACCTTGTCCTCGCTGTAGATGCCGGAGGGGCATGAGG
TGATGCGGGCCATGGTGGGGGACGGCGCGGGCGATGACTTCAATGTCGGC
GTTGATAAGTATAACCTAACTCACCTACTCTTGGGTTATGTGAAGGAAGA
GGTCGTGGCAGAGTCAGGGATCAACGTGCGACACGAGGCCTGGATGCCAG
GTGAGAAGGGCCACGAACAGCCGCCTCCATCGCCGAGCCCGCCTGCCGGT
GGGAGTTTGGGGGCTCACGGCCGTCTTCGGGCTTTACTGGCCGAGCTCTT
CCCCCCTCAGCCCACAACTGCCATGATGGGAGCCGTCTGCAATTGTGCGC
GAGGCGTGCAGTTCCTCTCCCCTGTGGTAGTTGAGTATGCCTTGGAGGTC
AACGGCCTGGAGGGTGCACTTTCCGTTCCCTTGATGCTGGCCTGCTTGAC
CGGCACCTGGGTGCGGGTGCTGCCCGAGACGAAGGACATGACCTTGTCCT
CGCTGTAGATGCCGGAGGGGCATGAGGTGATGCGGGCCATGGTGGGGGAC
GGCGCGGGCGATGACTTCAATGTCGGCGTTGATAAGTATAACCTAACTCA
CCTACTCTTGGGTTATGTGAAGGAAGAGGTCGTGGCAGAGTCAGGGATCA
ACGTGCGACACGAGGCCTGGATGCCAGGTGAGAAGGGCCACGAACAGCCG
CCTCCATCGCCGAGCCCGCCTGCCGGTGGGAGTTTGGGGGCTCACGGCCG
TCTTCGGGCTTTACTGGCCGAGCTCTTCCCCCCTCAGCCCACAACTGCCA
TGATGGGAGCCGTCTGCAATTGTGCGCGAGGCGTGCAGTTCCTCTCCCCT
GTGGTAGTTGAGTATGCCTTGGAGGTCAACGGCCTGGAGGGTGCACTTTC
CGTTCCCTTGATGCTGGCCTGCTTGACCGGCACCTGGGTGCGGGTGCTGC
CCGAGACGAAGGACATGACCTTGTCCTCGCTGTAGATGCCGGAGGGGCAT
GAGGTGATGCGGGCCATGGTGGGGGACGGCGCGGGCGATGACTTCAATGT
CGGCGTTGATAAGTATAACCTAACTCACCTACTCTTGGGTTATGTGAAGG
AAGAGGTCGTGGCAGAGTCAGGGATCAACGTGCGACACGAGGCCTGGATG
CCAGGTGAGAAGGGCCACGAACAGCCGCCTCCATCGCCGAGCCCGCCTGC
CGGTGGGAGTTTGGGGGCTCACGGCCGTCTTCGGGCTTTACTGGCCGAGC
TCTTCCCCCCTCAGCCCACAACTGCCATGATGGGAGCCGTCTGCAATTGT
GCGCGAGGCGTGCAGTTCCTCTCCCCTGTGGTAGTTGAGTATGCCTTGGA
GGTCAACGGCCTGGAGGGTGCACTTTCCGTTCCCTTGATGCTGGCCTGCT
TGACCGGCACCTGGGTGCGGGTGCTGCCCGAGACGAAGGACATGACCTTG
TCCTCGCTGTAG

Synonyms

Publications