jgi.p|Nanoce1779_2|620139, mRNA_12011 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|620139
Unique Name	mRNA_12011
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2388
Alignment location	scaffold_204:12441..15003 -

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Properties


Property Name	Value
TranscriptId	620225
Track	FilteredModels2
ProteinId	620139

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_204	supercontig	scaffold_204:12441..15003 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|620139	gene_12011	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|620139	mRNA_12011-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12011	CDS_12011	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_204:12441..15003-
coding sequence from alignment at scaffold_204:12441..15003-

mRNA sequence

>mRNA_12011 ID=mRNA_12011|Name=jgi.p|Nanoce1779_2|620139|organism=Nannochloropsis oceanica|type=mRNA|length=2388bp
GTGGCGTGGGGCATCTGGCCTCGGGATTCCGTGGAGATCTTGGGCGGGGC
GGAGAAAGAGGAAGGAAGTGTATTACAGTACGGCTTCTCAGAGGGGGAGC
AATTCCCGCCCTCTGAACCGTATCATGCAGGCAACGACGGAGCATGTGGG
AGAGGGACTCTTGGCCGGACTGGAGCAAACGCTCAGCACACTGGCCTTCG
AGGATGGTACGGCGGAAGAGTTGGAGAAGGACACGGACCTGATGGTCTTC
CTGGCCAAGTTTATCATGCCCTTACGGTTCCGGGGCTTAATGCGTTTTGG
ATTATCACCAATCAATTTCTCGCCCCAGCGCCGAGACGCAGCACGCTTTT
CAATGGACGGGCCGGGCGCGAGGGACGGACTCTTCAACCTCACCGACCTC
CAAAGTACGCCACTTTTTCTAAGCACCCCGCACTACATGGGCTATCCGCA
GCTCAAATCGTTGGAGTGTTTGAGTGTCATTGCCTACGATCCAGTCGGCG
AGCAAGACGCTGCCATGGGGAGTCATCTGGATATAGATCCCTACACGGGA
AGGACAATGTCAGCAGCGGTTCGTATGCAGCTGTCAACCTCAACAGCAGG
TGGGAACAAGGTCTATGATGTGTTCCATGACAAAGCTTACGCTGCTGAGG
TTATTCCACTACTGTGGATGACGCAGCAGGCAGAAGTGGGGCCAGCGGAC
GCGGTATTATTCAAGAAGCTGTGTTCTGCGCCGCTAACCGCGGTCGAGCA
ATTCCAAAGGTATACCTTGCTGGTAGGGATTGTGTTGACGGTGTTGGGTC
TGGTAATGGTAGTGGCCGGCTGTTTCTTTGCTCGCAGAAAGCGAAGTGAA
GAGAAGACTGCAGATTCTCGGGGATGCACCATTAATATTCTTTGAGTTTG
ACACCACACCAACGCAACGAAAGGCCATAAAATGAATAATACAAGAGAGT
CAATTTGTGAAATCGATTCCCATTTTAGTGCTGTGCAAGTGCTTGTGAAG
ATGTGTGTGGGCGCAAGTGTGAGCAGAATGCAAAAGAGGGACACTTTCCA
GGGAAAAACACGAAAGAGATTTGCTTTAAGTTTGAGACGCGACCAAATAA
TTGAATCGTAAATTATTTTTGTAATTATTGTAATTTGGTTGTGACAGGTA
ACGACTATGCCAATACGAACAACTGGGAGGGAACAAAAGGCCGGAAGCTT
CTCGCTAATTAGAAGCAGAATAGGACACCTTGCATGATAAACCTAAAATA
CAGCTTCTACGTTTTTTTGACTCGAGAATTTGATCACGCAGCCAACGTCC
ATATCTTCATTATGTTCTGGCGGTCGCCGCTTCCATAGAATCTTCTCTCT
AAGTTCCTCTTCCTCCTCCACATCCTCATTCTCTTCCCCTCCTTCCATTA
AGGGTAGGTTGGGAAAGTCTGTGACGCACAAGTCTACAAAAGCTGACTTG
ACTACTTTATCCTCTTTCTCTCTCTCGCTCCTCGTTTTGCTTTCCACCTG
CTTCTCCTCTTCCCCTTCATCTCCCTTCTCCTCCTCCTTTCTCTTCCACG
ATACAAGGGTCTCTCTCATCCAGGGCAACAATGGGAGGATGCAATCACTC
TCATCCTTCTCCTTCTCGCTCGCCAATGTCCTCTCTTCGTAGCTCCTCAA
TCTATTTCCAACCAACAACACATTCTGTAGGCAATCGGGTGACCAATTGG
CCCATAAGAGATTACTGTAAAGACGACGATGACAGCAGGGCATAAAAAAG
ACTGTCGGTGTGAGGGCCCGGCGTTTGCCGTGTTCGTTGTGAGGGAGGAC
GTGCCACCCGAGAAGGGTCAGGAGATGAGTGTCCAAGCCATCAAACAAGG
GGTCGTAGACTTCGGCTGTTAAGAGAGGAGGAGAAGAGGGAGAGGGGGGG
AGGGAGCTAAGGAGAATGTGAAGGCGGTCCTTAAGAAGACAGGCACATGC
CAACTGCCATAGTGGATGACTATCGGTGCTCTGTATGCTTCCCAAGCCGT
AGCAGACTAGTGTGCGGACTTCTCGATCTTCCCTCCCTCCTGTTTCCATC
CCGACCCAGATGTGAAGCGCGACAGGAGCGCATGTTCGAGGTTGGAATAG
AAAGCAGTGGGTGATAGCATTCTTTTGGCAATCTCTACGGCAGCGAGCAG
GCGGGTGGTCTCGCATTGTATATCAGCGGACGTGTACGTATCCCTTAGGC
CTCCCCCATGAGGTTGGTGGAAGGAGGCAGGGAATGCCGTGGTGCTGCTG
CTGCGGCTGCTGGGCTTTCTTTTTGCGCTTTTGCCCTTCTTGCTGGACGT
GACAAATACCCATTCTGTCTCTTTTTCTTTCTTTTTGTTGTCATCGTCCT
TGTCATCATCGGCGCCGGTCTCTGCCATCTTGCCCTGT

protein sequence of jgi.p|Nanoce1779_2|620139

>mRNA_12011-protein ID=mRNA_12011-protein|Name=jgi.p|Nanoce1779_2|620139|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MQATTEHVGEGLLAGLEQTLSTLAFEDGTAEELEKDTDLMVFLAKFIMPL
RFRGLMRFGLSPINFSPQRRDAARFSMDGPGARDGLFNLTDLQSTPLFLS
TPHYMGYPQLKSLECLSVIAYDPVGEQDAAMGSHLDIDPYTGRTMSAAVR
MQLSTSTAGGNKVYDVFHDKAYAAEVIPLLWMTQQAEVGPADAVLFKKLC
SAPLTAVEQFQRYTLLVGIVLTVLGLVMVVAGCFFARRKRSEEKTADSRG
CTINIL*

mRNA from alignment at scaffold_204:12441..15003-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12011 ID=mRNA_12011|Name=jgi.p|Nanoce1779_2|620139|organism=Nannochloropsis oceanica|type=mRNA|length=2563bp|location=Sequence derived from alignment at scaffold_204:12441..15003- (Nannochloropsis oceanica)
GTGGCGTGGGGCATCTGGCCTCGGGATTCCGTGGAGATCTTGGGCGGGGC
GGAGAAAGAGGAAGGAAGTGTATTACAGTACGGCTTCTCAGAGGGGGAGC
AATTCCCGCCCTCTGAACCGTATCATGCAGGCAACGACGGAGCATGTGGG
AGAGGGACTCTTGGCCGGACTGGAGCAAACGCTCAGCACACTGGCCTTCG
AGGATGGTACGGCGGAAGAGTTGGAGAAGGACACGGACCTGATGGTCTTC
CTGGCCAAGTTTATCATGCCCTTACGGTTCCGGTACGAAGGGCCCTCTGA
TTCAGTGCAAGGCATCGAGGGGCTTAATGCGTTTTGGATTATCACCAATC
AATTTCTCGCCCCAGCGCCGAGACGCAGCACGCTTTTCAATGGACGGGCC
GGGCGCGAGGGACGGACTCTTCAACCTCACCGACCTCCAAAGTACGCCAC
TTTTTCTAAGCACCCCGCACTACATGGGCTATCCGCAGCTCAAATCGTTG
GAGTGTTTGAGTGTCATTGCCTACGATCCAGTCGGCGAGCAAGACGCTGC
CATGGGGAGTCATCTGGATATAGATCCCTACACGGGAAGGACAATGTCAG
CAGCGGTTCGTATGCAGCTGTCAACCTCAACAGCAGGTGGGAACAAGGTC
TATGATGTGTTCCATGACAAAGCTTACGCTGCTGAGGTTATTCCACTACT
GTGGATGACGCAGCAGGCAGAAGTGGGGCCAGCGGACGCGGTATTATTCA
AGAAGCTGTGTTCTGCGCCGCTAACCGCGGTCGAGCAATTCCAAAGGTAT
ACCTTGCTGGTAGGGATTGTGTTGACGGTGTTGGGTCTGGTAATGGTAGT
GGCCGGCTGTTTCTTTGCTCGCAGAAAGCGAAGTGAAGAGAAGACTGCAG
ATTCTCGGGGATGCACCATTAATATTCTTTGAGTTTGACACCACACCAAC
GCAACGAAAGGCCATAAAATGAATAATACAAGAGAGTCAATTTGTGAAAT
CGATTCCCATTTTAGTGCTGTGCAAGTGCTTGTGAAGATGTGTGTGGGCG
CAAGTGTGAGCAGAATGCAAAAGAGGGACACTTTCCAGGGAAAAACACGA
AAGAGATTTGCTTTAAGTTTGAGACGCGACCAAATAATTGAATCGTAAAT
TATTTTTGTAATTATTGTAATTTGGTTGTGACAGGTAACGACTATGCCAA
TACGAACAACTGGGAGGGAACAAAAGGCCGGAAGCTTCTCGCTAATTAGA
AGCAGAATAGGACACCTTGCATGATAAACCTAAAATACAGCTTCTACGTT
TTTTTGACTCGAGAATTTGATCACGCAGCCAACGTCCATATCTTCATTAT
GTTCTGGCGGTCGCCGCTTCCATAGAATCTTCTCTCTAAGTTCCTCTTCC
TCCTCCACATCCTCATTCTCTTCCCCTCCTTCCATTAAGGGTAGGTTGGG
AAAGTCTGTGACGCACAAGTCTACAAAAGCTGACTTGACTACTTTATCCT
CTTTCTCTCTCTCGCTCCTCGTTTTGCTTTCCACCTGCTTCTCCTCTTCC
CCTTCATCTCCCTTCTCCTCCTCCTTTCTCTTCCACGATACAAGGGTCTC
TCTCATCCAGGGCAACAATGGGAGGATGCAATCACTCTCATCCTTCTCCT
TCTCGCTCGCCAATGTCCTCTCTTCGTAGCTCCTCAATCTATTTCCAACC
AACAACACATTCTGTAGGCAATCGGGTGACCAATTGGCCCATAAGAGATT
ACTGTAAAGACGACGATGACAGCAGGGCATAAAAAAGACTGTCGGTGTGA
GGGCCCGGCGTTTGCCGTGTTCGTTGTGAGGGAGGACGTGCCACCCGAGA
AGGGTCAGGAGATGAGTGTCCAAGCCATCAAACAAGGGGTCGTAGACTTC
GGCTGTTAAGAGAGGAGGAGAAGAGGGAGAGGGGGGGAGGGAGCTAAGGA
GAATGTGAAGGCGGTCCTTAAGAAGACAGGCACATGCCAACTGCCATAGT
GGATGACTATCGGTGCTCTGTATGCTTCCCAAGCCGTAGCAGACTAGTGT
GCGGACTTCTCGATCTTCCCTCCCTCCTGTTTCCATCCCGACCCAGATGT
GAAGCGCGACAGGAGCGCATGTTCGAGGTTGGAATAGAAAGCAGTGGGTG
ATAGCATTCTTTTGGCAATCTCTACGGCAGCGAGCAGGCGGGTGGTCTCG
CATTGTATATCAGCGGACGTGTACGTATCCCTATGCGTGGATACAGGTGC
CGGGATAGGGTGAGGGACGAGATGGGCAAGGGGAAGGGCCAGGGCTATGC
TATGACGGGCGCCCACACACAAGCAGATATCAAGATCCATATGTCCACAG
TACAACACGGTGACGTACCTTAGGCCTCCCCCATGAGGTTGGTGGAAGGA
GGCAGGGAATGCCGTGGTGCTGCTGCTGCGGCTGCTGGGCTTTCTTTTTG
CGCTTTTGCCCTTCTTGCTGGACGTGACAAATACCCATTCTGTCTCTTTT
TCTTTCTTTTTGTTGTCATCGTCCTTGTCATCATCGGCGCCGGTCTCTGC
CATCTTGCCCTGT

Coding sequence (CDS) from alignment at scaffold_204:12441..15003-

>mRNA_12011 ID=mRNA_12011|Name=jgi.p|Nanoce1779_2|620139|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at scaffold_204:12441..15003- (Nannochloropsis oceanica)
GGGCTTAATGCGTTTTGGATTATCACCAATCAATTTCTCGCCCCAGCGCC
GAGACGCAGCACGCTTTTCAATGGACGGGCCGGGCGCGAGGGACGGACTC
TTCAACCTCACCGACCTCCAAAGTACGCCACTTTTTCTAAGCACCCCGCA
CTACATGGGCTATCCGCAGCTCAAATCGTTGGAGTGTTTGAGTGTCATTG
CCTACGATCCAGTCGGCGAGCAAGACGCTGCCATGGGGAGTCATCTGGAT
ATAGATCCCTACACGGGAAGGACAATGTCAGCAGCGGTTCGTATGCAGCT
GTCAACCTCAACAGCAGGTGGGAACAAGGTCTATGATGTGTTCCATGACA
AAGCTTACGCTGCTGAGGTTATTCCACTACTGTGGATGACGCAGCAGGCA
GAAGTGGGGCCAGCGGACGCGGTATTATTCAAGAAGCTGTGTTCTGCGCC
GCTAACCGCGGTCGAGCAATTCCAAAGGTATACCTTGCTGGTAGGGATTG
TGTTGACGGTGTTGGGTCTGGTAATGGTAGTGGCCGGCTGTTTCTTTGCT
CGCAGAAAGCGAAGTGAAGAGAAGACTGCAGATTCTCGGGGATGCACCAT
TAATATTCTTTGAATGCAGGCAACGACGGAGCATGTGGGAGAGGGACTCT
TGGCCGGACTGGAGCAAACGCTCAGCACACTGGCCTTCGAGGATGGTACG
GCGGAAGAGTTGGAGAAGGACACGGACCTGATGGTCTTCCTGGCCAAGTT
TATCATGCCCTTACGGTTCCGGGGCTTAATGCGTTTTGGATTATCACCAA
TCAATTTCTCGCCCCAGCGCCGAGACGCAGCACGCTTTTCAATGGACGGG
CCGGGCGCGAGGGACGGACTCTTCAACCTCACCGACCTCCAAAGTACGCC
ACTTTTTCTAAGCACCCCGCACTACATGGGCTATCCGCAGCTCAAATCGT
TGGAGTGTTTGAGTGTCATTGCCTACGATCCAGTCGGCGAGCAAGACGCT
GCCATGGGGAGTCATCTGGATATAGATCCCTACACGGGAAGGACAATGTC
AGCAGCGGTTCGTATGCAGCTGTCAACCTCAACAGCAGGTGGGAACAAGG
TCTATGATGTGTTCCATGACAAAGCTTACGCTGCTGAGGTTATTCCACTA
CTGTGGATGACGCAGCAGGCAGAAGTGGGGCCAGCGGACGCGGTATTATT
CAAGAAGCTGTGTTCTGCGCCGCTAACCGCGGTCGAGCAATTCCAAAGGT
ATACCTTGCTGGTAGGGATTGTGTTGACGGTGTTGGGTCTGGTAATGGTA
GTGGCCGGCTGTTTCTTTGCTCGCAGAAAGCGAAGTGAAGAGAAGACTGC
AGATTCTCGGGGATGCACCATTAATATTCTTTGAATGCAGGCAACGACGG
AGCATGTGGGAGAGGGACTCTTGGCCGGACTGGAGCAAACGCTCAGCACA
CTGGCCTTCGAGGATGGTACGGCGGAAGAGTTGGAGAAGGACACGGACCT
GATGGTCTTCCTGGCCAAGTTTATCATGCCCTTACGGTTCCG

Synonyms

Publications