jgi.p|Nanoce1779_2|676087, mRNA_12014 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|676087
Unique Name	mRNA_12014
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1957
Alignment location	scaffold_204:20094..22565 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	676173
Track	FilteredModels2
ProteinId	676087

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_204	supercontig	scaffold_204:20094..22565 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|676087	gene_12014	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|676087	mRNA_12014-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12014	CDS_12014	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_204:20094..22565+
coding sequence from alignment at scaffold_204:20094..22565+

mRNA sequence

>mRNA_12014 ID=mRNA_12014|Name=jgi.p|Nanoce1779_2|676087|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp
CCCCCCGACCCGCACTACGATGGACCTCTCCCTCCCCCTTACTTTGCATT
TAGGTACACCACGATGGCGACTGGCATTACCTATCATAGATACATGCCCT
CCTCCTCCTACGACTCGCAGGCATCGTACTCTCCCTTCTATGGGAACCCG
CAGCCTCATGGCGGCAATACGGAGGCGAGCACTTCCCCTCACTATTACCA
GCAAGCAGCAGTTGCAGGAGGGGATGAGAGGAGGAATTGAGGGAGGAATG
AACCGCAGCAACTTCAATCCTCCCCCACCCTGACATGATAATGACGGCGG
TGATACAGCAAGGCAGCAGTAATAGCAAGTGTAAATATAGTAATGGCACG
GATGAGGACATGAAGGCAATGGAGCAACACAAGCGAGGAATTGTGGAGCA
GACGAGAGAGAGAGGGTCGGAGAAGGAAACGCGAGAGGAGGTATTGTCTA
ATGGCGTGAGAAAAATCACACGTGGTGAATTGACGCACTATATCTATCCC
GAGGATGTGGCGCGGATGACTCAGGAGGAGATCATGATGGAGATGTCTGC
CTCCAGCCATATCCTCAATGCTAACCTGCCCTTAGAGAGGCAGCAGCACC
ATCCTCAGCAGTTTCCGCAGCATCACTACCACCACCACCACCAGCAGCAG
CACTATCAATGCTACACCCCACCGGGCTCGCCCCCGCTTCAAAAACAGAT
TCAGTCGAAGTTTCCCAGCGAAAAACAGCAGCTAAGACAGCAGCACCAGC
AGCAGAACCAGCCCAAGTGGAACGGTTTCCCCCGCATGCCTCTCTTCTCG
ACCACAGACTACGCGGGGAAGGCCTACACATTCTACCGACCGGATGACTA
CCAGGACGTCATTTGCTACCCCACCCGTTTCTTCCACTGCCCCCAGCCTC
CCCTTGCCCTTCCGGCCCGGGAAATGGAGCGCCGCGGCCTGCCGTACGGG
CCAACCTATGGACCATTGGCGCCATGGCATTTCCCTTATGAGCGACCACA
GCCGGTGGCGGCGGAAGGGAAGTGAGAGAGGGAAAGAGAAGGGATGGTGG
TGGATTGCGTTTATGTCTCAACAGAGATGAACAGGAACGGACTGGGGGGA
TCTAAGAGCCTGTGCATAAAAGAGATAGGAAAATATGAATCTGTATACAC
AAATATGAGCACCGACAGAGGAAAAGGAAAAATAAATGGATAGAACAAGA
GTTTATAAAATAATCACTCAGACAAGTTGTATTTTAAGGAAAAGATTTGC
ACTAGGCATGAACCGAAGGCAATCAGCAAAAAATGCAGAACCGACCAGAC
GAAATCAGCAGAGACAATATAAAGTTTGAGAATTAGGGAGGAATAAAGGA
CGTAAGGTAGTTTTTATACTCTAAAATATCGACTTTCGAGAGTGCGGCGA
CCCAGATAGGAAATTAAAAAAGAGTAGAGTGAAAAAAGACGAAGGAACAA
AGCAGAGAAGAGGACGTAAAAATTTTATCCATGCATGTAATTGATTGGTA
CAAATTTGGACTACTAGCGAGTAAAAATACATTACTGAAAAGCCGGAAAT
GTGTTGTGAAAACAAAGCTAAAAATATAACGACAAGCGACTGGCCCGTTC
CGACAGAAAGCAAGCAAGAAGCATCATATTGACAGTGGTAGTGAGAGATA
TGGAAAGAAAAGATAAAATTCACGAAGATAACAAGGACTATCAGAGTCTG
ATTGAAGGGGCAATTTGTGCAGAATACGAGAAAAAAAGGCAGTCATTTAC
TCGCCTTAATACCCACTCGGGCAATCTCAAAGAGATGGTAGAAAATAGAG
GGAAAAGAGAGCGTCATTCACCAAATGGAGGGCTATAGAAAGTGCAGCCA
GCTTGTCGATCGAGATAGAGGAAGAGGAAAATATAGAGCGAGAGTAGTAG
AGTGAGTACGCATCTATCCACACACAAATTTACGCACATATCCATGTTCA
CTTGTGC

protein sequence of jgi.p|Nanoce1779_2|676087

>mRNA_12014-protein ID=mRNA_12014-protein|Name=jgi.p|Nanoce1779_2|676087|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MIMTAVIQQGSSNSKCKYSNGTDEDMKAMEQHKRGIVEQTRERGSEKETR
EEVLSNGVRKITRGELTHYIYPEDVARMTQEEIMMEMSASSHILNANLPL
ERQQHHPQQFPQHHYHHHHQQQHYQCYTPPGSPPLQKQIQSKFPSEKQQL
RQQHQQQNQPKWNGFPRMPLFSTTDYAGKAYTFYRPDDYQDVICYPTRFF
HCPQPPLALPAREMERRGLPYGPTYGPLAPWHFPYERPQPVAAEGK*

mRNA from alignment at scaffold_204:20094..22565+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12014 ID=mRNA_12014|Name=jgi.p|Nanoce1779_2|676087|organism=Nannochloropsis oceanica|type=mRNA|length=2472bp|location=Sequence derived from alignment at scaffold_204:20094..22565+ (Nannochloropsis oceanica)
CCCCCCGACCCGCACTACGATGGACCTCTCCCTCCCCCTTACTTTGCATT
TAGGTACACCACGATGGCGACTGGCATTACCTATCATAGATACATGCCCT
CCTCCTCCTACGACTCGCAGGCATCGTACTCTCCCTTCTATGGGAACCCG
CAGCCTCATGGCGGCAATACGGAGGCGAGCACTTCCCCTCACTATTACCA
GCAAGCAGCAGTTGCAGGAGGGGATGAGAGGAGGAATTGAGGGAGGAATG
AACCGCAGCAACTTCAATCCTCCCCCACCCTGACATGATAATGACGGCGG
TGATACAGCAAGGCAGCAGTAATAGCAAGTGTAAATATAGTAATGGCACG
GATGAGGACATGAAGGCAATGGAGCAACACAAGCGAGGAATTGTGGAGCA
GACGAGAGAGAGAGGGTCGGAGAAGGAAACGCGAGAGGAGGTATTGTCTA
ATGGCGTGAGAAAAATCACACGTGGTGAATTGACGCACTATATCTATCCC
GAGGATGTGGCGCGGATGACTCAGGAGGAGATCATGATGGAGATGTCTGC
CTCCAGCCATATCCTCAATGCTAACCTGCCCTTAGAGAGGCAGCAGCACC
ATCCTCAGCAGTTTCCGCAGCATCACTACCACCACCACCACCAGCAGCAG
CACTATCAATGCTACACCCCACCGGGCTCGCCCCCGGTACAGCCCTATCA
AAACATCTCTCCGCCCTACTCCCCCGTGACCACCCCACCCGTTATGCAGT
ATGAGAAGCATTTTTTGGGAAAAAGATCCCATCCCCAAAGTCCCCAGGAC
GAGGAGCAGCAAGTACCCACCCACTATAACGGGCCTCCTTCCCCGCTTAC
ACCTGCACCTTGCTCTCCCCCTTCCTATCCGATGGATACCACGCTTTTCA
ACGATCAAATCCTGCCCCACAGTCACCAATCACACCGCCAGCTTCAAAAA
CAGATTCAGTCGAAGGTACAAGAGCAGCAGCAGCAGAAGCAGCAGCAGTC
GCCCGGAATGTTCAAGACCAAGAGCCCCCCTCCCATCCTCCCCGCTATTA
CCGAGGGAAATTCTATGTGTCCCTCTCTCCCTCCCTGTTGTAACAGTTTA
GATAAGAGTGGGGGCAGCAGCAGTTGTAGTGACAGTGAGAACAGCAAGGG
AGGCAAGAAGATCAGGAGCTACCGCACCAAGAGGAGGGGCTGCTCCGCAC
CGCCACCAACAACACCCGCAACAAGTTTCCCAGCGAAAAACAGCAGCTAA
GACAGCAGCACCAGCAGCAGAACCAGCCCAAGTGGAACGGTTTCCCCCGC
ATGCCTCTCTTCTCGACCACAGACTACGCGGGGAAGGCCTACACATTCTA
CCGACCGGATGACTACCAGGACGTCATTTGCTACCCCACCCGTTTCTTCC
ACTGCCCCCAGCCTCCCCTTGCCCTTCCGGCCCGGGAAATGGAGCGCCGC
GGCCTGCCGTACGGGCCAACCTATGGACCATTGGCGCCATGGCATTTCCC
TTATGAGCGACCACAGCCGGTGGCGGCGGAAGGGAAGTGAGAGAGGGAAA
GAGAAGGGATGGTGGTGGATTGCGTTTATGTCTCAACAGAGATGAACAGG
AACGGACTGGGGGGATCTAAGAGCCTGTGCATAAAAGAGATAGGAAAATA
TGAATCTGTATACACAAATATGAGCACCGACAGAGGAAAAGGAAAAATAA
ATGGATAGAACAAGAGTTTATAAAATAATCACTCAGACAAGTTGTATTTT
AAGGAAAAGATTTGCACTAGGCATGAACCGAAGGCAATCAGCAAAAAATG
CAGAACCGACCAGACGAAATCAGCAGAGACAATATAAAGTTTGAGAATTA
GGGAGGAATAAAGGACGTAAGGTAGTTTTTATACTCTAAAATATCGACTT
TCGAGAGTGCGGCGACCCAGATAGGAAATTAAAAAAGAGTAGAGTGAAAA
AAGACGAAGGAACAAAGCAGAGAAGAGGACGTAAAAATTTTATCCATGCA
TGTAATTGATTGGTACAAATTTGGACTACTAGCGAGTAAAAATACATTAC
TGAAAAGCCGGAAATGTGTTGTGAAAACAAAGCTAAAAATATAACGACAA
GCGACTGGCCCGTTCCGACAGAAAGCAAGCAAGAAGCATCATATTGACAG
TGGTAGTGAGAGATATGGAAAGAAAAGATAAAATTCACGAAGATAACAAG
GACTATCAGAGTCTGATTGAAGGGGCAATTTGTGCAGAATACGAGAAAAA
AAGGCAGTCATTTACTCGCCTTAATACCCACTCGGGCAATCTCAAAGAGA
TGGTAGAAAATAGAGGGAAAAGAGAGCGTCATTCACCAAATGGAGGGCTA
TAGAAAGTGCAGCCAGCTTGTCGATCGAGATAGAGGAAGAGGAAAATATA
GAGCGAGAGTAGTAGAGTGAGTACGCATCTATCCACACACAAATTTACGC
ACATATCCATGTTCACTTGTGC

Coding sequence (CDS) from alignment at scaffold_204:20094..22565+

>mRNA_12014 ID=mRNA_12014|Name=jgi.p|Nanoce1779_2|676087|organism=Nannochloropsis oceanica|type=CDS|length=2223bp|location=Sequence derived from alignment at scaffold_204:20094..22565+ (Nannochloropsis oceanica)
ATGATAATGACGGCGGTGATACAGCAAGGCAGCAGTAATAGCAAGTGTAA
ATATAGTAATGGCACGGATGAGGACATGAAGGCAATGGAGCAACACAAGC
GAGGAATTGTGGAGCAGACGAGAGAGAGAGGGTCGGAGAAGGAAACGCGA
GAGGAGGTATTGTCTAATGGCGTGAGAAAAATCACACGTGGTGAATTGAC
GCACTATATCTATCCCGAGGATGTGGCGCGGATGACTCAGGAGGAGATCA
TGATGGAGATGTCTGCCTCCAGCCATATCCTCAATGCTAACCTGCCCTTA
GAGAGGCAGCAGCACCATCCTCAGCAGTTTCCGCAGCATCACTACCACCA
CCACCACCAGCAGCAGCACTATCAATGCTACACCCCACCGGGCTCGCCCC
CGCTTCAAAAACAGATTCAGTCGAAGTTTCCCAGCGAAAAACAGCAGCTA
AGACAGCAGCACCAGCAGCAGAACCAGCCCAAGTGGAACGGTTTCCCCCG
CATGCCTCTCTTCTCGACCACAGACTACGCGGGGAAGGCCTACACATTCT
ACCGACCGGATGACTACCAGGACGTCATTTGCTACCCCACCCGTTTCTTC
CACTGCCCCCAGCCTCCCCTTGCCCTTCCGGCCCGGGAAATGGAGCGCCG
CGGCCTGCCGTACGGGCCAACCTATGGACCATTGGCGCCATGGCATTTCC
CTTATGAGCGACCACAGCCGGTGGCGGCGGAAGGGAAGTGAATGATAATG
ACGGCGGTGATACAGCAAGGCAGCAGTAATAGCAAGTGTAAATATAGTAA
TGGCACGGATGAGGACATGAAGGCAATGGAGCAACACAAGCGAGGAATTG
TGGAGCAGACGAGAGAGAGAGGGTCGGAGAAGGAAACGCGAGAGGAGGTA
TTGTCTAATGGCGTGAGAAAAATCACACGTGGTGAATTGACGCACTATAT
CTATCCCGAGGATGTGGCGCGGATGACTCAGGAGGAGATCATGATGGAGA
TGTCTGCCTCCAGCCATATCCTCAATGCTAACCTGCCCTTAGAGAGGCAG
CAGCACCATCCTCAGCAGTTTCCGCAGCATCACTACCACCACCACCACCA
GCAGCAGCACTATCAATGCTACACCCCACCGGGCTCGCCCCCGCTTCAAA
AACAGATTCAGTCGAAGTTTCCCAGCGAAAAACAGCAGCTAAGACAGCAG
CACCAGCAGCAGAACCAGCCCAAGTGGAACGGTTTCCCCCGCATGCCTCT
CTTCTCGACCACAGACTACGCGGGGAAGGCCTACACATTCTACCGACCGG
ATGACTACCAGGACGTCATTTGCTACCCCACCCGTTTCTTCCACTGCCCC
CAGCCTCCCCTTGCCCTTCCGGCCCGGGAAATGGAGCGCCGCGGCCTGCC
GTACGGGCCAACCTATGGACCATTGGCGCCATGGCATTTCCCTTATGAGC
GACCACAGCCGGTGGCGGCGGAAGGGAAGTGAATGATAATGACGGCGGTG
ATACAGCAAGGCAGCAGTAATAGCAAGTGTAAATATAGTAATGGCACGGA
TGAGGACATGAAGGCAATGGAGCAACACAAGCGAGGAATTGTGGAGCAGA
CGAGAGAGAGAGGGTCGGAGAAGGAAACGCGAGAGGAGGTATTGTCTAAT
GGCGTGAGAAAAATCACACGTGGTGAATTGACGCACTATATCTATCCCGA
GGATGTGGCGCGGATGACTCAGGAGGAGATCATGATGGAGATGTCTGCCT
CCAGCCATATCCTCAATGCTAACCTGCCCTTAGAGAGGCAGCAGCACCAT
CCTCAGCAGTTTCCGCAGCATCACTACCACCACCACCACCAGCAGCAGCA
CTATCAATGCTACACCCCACCGGGCTCGCCCCCGCTTCAAAAACAGATTC
AGTCGAAGTTTCCCAGCGAAAAACAGCAGCTAAGACAGCAGCACCAGCAG
CAGAACCAGCCCAAGTGGAACGGTTTCCCCCGCATGCCTCTCTTCTCGAC
CACAGACTACGCGGGGAAGGCCTACACATTCTACCGACCGGATGACTACC
AGGACGTCATTTGCTACCCCACCCGTTTCTTCCACTGCCCCCAGCCTCCC
CTTGCCCTTCCGGCCCGGGAAATGGAGCGCCGCGGCCTGCCGTACGGGCC
AACCTATGGACCATTGGCGCCATGGCATTTCCCTTATGAGCGACCACAGC
CGGTGGCGGCGGAAGGGAAGTGA

Synonyms

Publications