jgi.p|Nanoce1779_2|534993, mRNA_12010 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|534993
Unique Name	mRNA_12010
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	807
Alignment location	scaffold_204:12918..13724 +

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Properties


Property Name	Value
TranscriptId	535079
Track	FilteredModels2
ProteinId	534993

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_204	supercontig	scaffold_204:12918..13724 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|534993	gene_12010	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|534993	mRNA_12010-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12010	CDS_12010	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_204:12918..13724+
coding sequence from alignment at scaffold_204:12918..13724+

mRNA sequence

>mRNA_12010 ID=mRNA_12010|Name=jgi.p|Nanoce1779_2|534993|organism=Nannochloropsis oceanica|type=mRNA|length=807bp
ATGGAAACAGGAGGGAGGGAAGATCGAGAAGTCCGCACACTAGTCTGCTA
CGGCTTGGGAAGCATACAGAGCACCGATAGTCATCCACTATGGCAGTTGG
CATGTGCCTGTCTTCTTAAGGACCGCCTTCACATTCTCCTTAGCTCCCTC
CCCCCCTCTCCCTCTTCTCCTCCTCTCTTAACAGCCGAAGTCTACGACCC
CTTGTTTGATGGCTTGGACACTCATCTCCTGACCCTTCTCGGGTGGCACG
TCCTCCCTCACAACGAACACGGCAAACGCCGGGCCCTCACACCGACAGTC
TTTTTTATGCCCTGCTGTCATCGTCGTCTTTACAGTAATCTCTTATGGGC
CAATTGGTCACCCGATTGCCTACAGAATGTGTTGTTGGTTGGAAATAGAT
TGAGGAGCTACGAAGAGAGGACATTGGCGAGCGAGAAGGAGAAGGATGAG
AGTGATTGCATCCTCCCATTGTTGCCCTGGATGAGAGAGACCCTTGTATC
GTGGAAGAGAAAGGAGGAGGAGAAGGGAGATGAAGGGGAAGAGGAGAAGC
AGGTGGAAAGCAAAACGAGGAGCGAGAGAGAGAAAGAGGATAAAGTAGTC
AAGTCAGCTTTTGTAGACTTGTGCGTCACAGACTTTCCCAACCTACCCTT
AATGGAAGGAGGGGAAGAGAATGAGGATGTGGAGGAGGAAGAGGAACTTA
GAGAGAAGATTCTATGGAAGCGGCGACCGCCAGAACATAATGAAGATATG
GACGTTGGCTGCGTGATCAAATTCTCGAGTCAAAAAAACGTAGAAGCTGT
ATTTTAG

protein sequence of jgi.p|Nanoce1779_2|534993

>mRNA_12010-protein ID=mRNA_12010-protein|Name=jgi.p|Nanoce1779_2|534993|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
METGGREDREVRTLVCYGLGSIQSTDSHPLWQLACACLLKDRLHILLSSL
PPSPSSPPLLTAEVYDPLFDGLDTHLLTLLGWHVLPHNEHGKRRALTPTV
FFMPCCHRRLYSNLLWANWSPDCLQNVLLVGNRLRSYEERTLASEKEKDE
SDCILPLLPWMRETLVSWKRKEEEKGDEGEEEKQVESKTRSEREKEDKVV
KSAFVDLCVTDFPNLPLMEGGEENEDVEEEEELREKILWKRRPPEHNEDM
DVGCVIKFSSQKNVEAVF*

mRNA from alignment at scaffold_204:12918..13724+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12010 ID=mRNA_12010|Name=jgi.p|Nanoce1779_2|534993|organism=Nannochloropsis oceanica|type=mRNA|length=807bp|location=Sequence derived from alignment at scaffold_204:12918..13724+ (Nannochloropsis oceanica)
ATGGAAACAGGAGGGAGGGAAGATCGAGAAGTCCGCACACTAGTCTGCTA
CGGCTTGGGAAGCATACAGAGCACCGATAGTCATCCACTATGGCAGTTGG
CATGTGCCTGTCTTCTTAAGGACCGCCTTCACATTCTCCTTAGCTCCCTC
CCCCCCTCTCCCTCTTCTCCTCCTCTCTTAACAGCCGAAGTCTACGACCC
CTTGTTTGATGGCTTGGACACTCATCTCCTGACCCTTCTCGGGTGGCACG
TCCTCCCTCACAACGAACACGGCAAACGCCGGGCCCTCACACCGACAGTC
TTTTTTATGCCCTGCTGTCATCGTCGTCTTTACAGTAATCTCTTATGGGC
CAATTGGTCACCCGATTGCCTACAGAATGTGTTGTTGGTTGGAAATAGAT
TGAGGAGCTACGAAGAGAGGACATTGGCGAGCGAGAAGGAGAAGGATGAG
AGTGATTGCATCCTCCCATTGTTGCCCTGGATGAGAGAGACCCTTGTATC
GTGGAAGAGAAAGGAGGAGGAGAAGGGAGATGAAGGGGAAGAGGAGAAGC
AGGTGGAAAGCAAAACGAGGAGCGAGAGAGAGAAAGAGGATAAAGTAGTC
AAGTCAGCTTTTGTAGACTTGTGCGTCACAGACTTTCCCAACCTACCCTT
AATGGAAGGAGGGGAAGAGAATGAGGATGTGGAGGAGGAAGAGGAACTTA
GAGAGAAGATTCTATGGAAGCGGCGACCGCCAGAACATAATGAAGATATG
GACGTTGGCTGCGTGATCAAATTCTCGAGTCAAAAAAACGTAGAAGCTGT
ATTTTAG

Coding sequence (CDS) from alignment at scaffold_204:12918..13724+

>mRNA_12010 ID=mRNA_12010|Name=jgi.p|Nanoce1779_2|534993|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at scaffold_204:12918..13724+ (Nannochloropsis oceanica)
ATGGAAACAGGAGGGAGGGAAGATCGAGAAGTCCGCACACTAGTCTGCTA
CGGCTTGGGAAGCATACAGAGCACCGATAGTCATCCACTATGGCAGTTGG
CATGTGCCTGTCTTCTTAAGGACCGCCTTCACATTCTCCTTAGCTCCCTC
CCCCCCTCTCCCTCTTCTCCTCCTCTCTTAACAGCCGAAGTCTACGACCC
CTTGTTTGATGGCTTGGACACTCATCTCCTGACCCTTCTCGGGTGGCACG
TCCTCCCTCACAACGAACACGGCAAACGCCGGGCCCTCACACCGACAGTC
TTTTTTATGCCCTGCTGTCATCGTCGTCTTTACAGTAATCTCTTATGGGC
CAATTGGTCACCCGATTGCCTACAGAATGTGTTGTTGGTTGGAAATAGAT
TGAGGAGCTACGAAGAGAGGACATTGGCGAGCGAGAAGGAGAAGGATGAG
AGTGATTGCATCCTCCCATTGTTGCCCTGGATGAGAGAGACCCTTGTATC
GTGGAAGAGAAAGGAGGAGGAGAAGGGAGATGAAGGGGAAGAGGAGAAGC
AGGTGGAAAGCAAAACGAGGAGCGAGAGAGAGAAAGAGGATAAAGTAGTC
AAGTCAGCTTTTGTAGACTTGTGCGTCACAGACTTTCCCAACCTACCCTT
AATGGAAGGAGGGGAAGAGAATGAGGATGTGGAGGAGGAAGAGGAACTTA
GAGAGAAGATTCTATGGAAGCGGCGACCGCCAGAACATAATGAAGATATG
GACGTTGGCTGCGTGATCAAATTCTCGAGTCAAAAAAACGTAGAAGCTGT
ATTTTAG

Synonyms

Publications